Wall clock time and date at job start Tue Mar 31 2020 23:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39839 * 126.45720 * 2 1 4 4 C 1.35455 * 107.86171 * 179.72045 * 3 2 1 5 5 N 1.35535 * 108.87625 * 0.42699 * 4 3 2 6 6 C 1.46499 * 125.67933 * 179.82927 * 5 4 3 7 7 C 1.37651 * 108.64223 * 359.57220 * 5 4 3 8 8 C 1.46670 * 126.23566 * 180.24271 * 7 5 4 9 9 O 1.21695 * 120.00304 * 99.21382 * 8 7 5 10 10 N 1.34777 * 119.99907 * 279.21351 * 8 7 5 11 11 C 1.46504 * 119.99919 * 4.86894 * 10 8 7 12 12 C 1.46497 * 120.00361 * 184.87081 * 10 8 7 13 13 C 1.53003 * 109.47213 * 89.99763 * 12 10 8 14 14 N 1.46508 * 109.47175 * 180.02562 * 13 12 10 15 15 C 1.34773 * 120.00005 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99797 * 359.97438 * 15 14 13 17 17 C 1.50700 * 119.99865 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.46884 * 180.02562 * 17 15 14 19 19 C 1.76198 * 99.99796 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99953 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99897 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99909 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00294 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47079 * 89.99949 * 23 21 19 25 25 H 1.48498 * 109.47358 * 210.00372 * 23 21 19 26 26 H 1.48501 * 109.46792 * 330.00129 * 23 21 19 27 27 H 1.08998 * 109.46695 * 270.01801 * 1 2 3 28 28 H 1.08994 * 109.47112 * 30.02079 * 1 2 3 29 29 H 1.09001 * 109.47014 * 150.02620 * 1 2 3 30 30 H 1.07994 * 126.06981 * 359.97438 * 3 2 1 31 31 H 1.08006 * 125.56055 * 180.26058 * 4 3 2 32 32 H 1.08998 * 109.46932 * 264.69409 * 6 5 4 33 33 H 1.09002 * 109.46933 * 144.69665 * 6 5 4 34 34 H 1.08997 * 109.46969 * 24.69485 * 6 5 4 35 35 H 1.09000 * 109.47418 * 84.65729 * 11 10 8 36 36 H 1.08999 * 109.47155 * 204.65872 * 11 10 8 37 37 H 1.08998 * 109.47026 * 324.65314 * 11 10 8 38 38 H 1.08997 * 109.47529 * 210.00016 * 12 10 8 39 39 H 1.09002 * 109.47109 * 329.99675 * 12 10 8 40 40 H 1.09000 * 109.47182 * 299.99764 * 13 12 10 41 41 H 1.08998 * 109.47281 * 60.00449 * 13 12 10 42 42 H 0.97000 * 119.99568 * 359.97438 * 14 13 12 43 43 H 1.09000 * 109.46599 * 299.99673 * 17 15 14 44 44 H 1.08998 * 109.47064 * 59.99867 * 17 15 14 45 45 H 0.97004 * 120.00055 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 0.0063 5 7 3.6284 -0.6625 0.0007 6 6 4.8226 -1.5111 0.0011 7 6 2.3263 -1.1090 0.0004 8 6 1.8899 -2.5092 0.0001 9 8 1.5475 -3.0401 1.0403 10 7 1.8681 -3.2080 -1.1521 11 6 2.3802 -2.6043 -2.3848 12 6 1.3322 -4.5713 -1.1720 13 6 -0.1679 -4.5254 -1.4697 14 7 -0.7039 -5.8888 -1.4890 15 6 -2.0131 -6.0947 -1.7338 16 8 -2.7476 -5.1514 -1.9376 17 6 -2.5646 -7.4971 -1.7531 18 16 -4.3389 -7.4428 -2.1068 19 6 -4.7107 -9.1648 -2.0710 20 1 -3.9284 -9.8821 -1.8715 21 6 -6.0090 -9.5992 -2.2993 22 7 -6.2867 -10.8856 -2.2730 23 14 -7.3623 -8.3585 -2.6437 24 1 -7.4510 -8.1159 -4.1061 25 1 -8.6583 -8.8898 -2.1505 26 1 -7.0533 -7.0833 -1.9483 27 1 -0.3633 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 2.0137 2.1548 -0.0004 31 1 4.4973 1.3253 0.0119 32 1 5.0671 -1.7948 -1.0225 33 1 4.6310 -2.4077 0.5907 34 1 5.6582 -0.9623 0.4355 35 1 3.4600 -2.7437 -2.4364 36 1 1.9108 -3.0812 -3.2452 37 1 2.1507 -1.5387 -2.3901 38 1 1.8384 -5.1496 -1.9450 39 1 1.4959 -5.0403 -0.2018 40 1 -0.6742 -3.9473 -0.6967 41 1 -0.3316 -4.0566 -2.4400 42 1 -0.1163 -6.6432 -1.3263 43 1 -2.0580 -8.0760 -2.5253 44 1 -2.4014 -7.9650 -0.7822 45 1 -7.1940 -11.1893 -2.4329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758913020.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:58 Heat of formation + Delta-G solvation = -45.189936 kcal Electronic energy + Delta-G solvation = -26318.539581 eV Core-core repulsion = 22462.423084 eV Total energy + Delta-G solvation = -3856.116497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.45889 -40.85960 -40.29430 -37.28810 -35.67158 -34.67358 -34.65432 -32.19900 -31.19094 -29.93099 -28.98591 -27.87298 -27.45459 -26.14721 -24.68528 -22.38540 -21.90278 -21.11247 -19.96496 -19.59339 -18.50037 -18.06354 -17.62712 -17.46153 -17.09202 -16.84075 -16.46901 -16.18274 -15.99381 -15.61172 -15.27598 -14.95980 -14.78440 -14.67993 -14.50929 -14.26551 -14.00175 -13.94519 -13.70039 -13.66175 -13.35792 -13.32358 -13.21489 -13.01889 -12.89514 -12.83929 -12.66200 -12.53430 -12.43113 -11.87909 -11.38685 -11.17350 -11.09762 -10.54241 -10.25066 -9.96519 -9.47371 -9.05488 -9.00498 -8.51825 -6.22751 0.85909 0.95798 1.14473 1.30782 1.44154 1.51081 1.51918 1.68572 1.92916 2.16460 2.24611 2.38431 2.72323 2.86317 3.43707 3.72353 3.87636 3.87923 3.91411 4.18318 4.21152 4.22766 4.29108 4.31515 4.33138 4.38814 4.46104 4.52423 4.63104 4.65146 4.73956 4.80163 4.81722 4.86762 5.06913 5.12435 5.19026 5.37092 5.41077 5.70612 5.89274 6.00364 6.11276 6.11328 6.38131 6.39850 6.85877 6.93402 7.13887 8.60384 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026710 B = 0.001932 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.049516 B =14489.676797 C =15092.314398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.132 4.132 3 C -0.218 4.218 4 C 0.023 3.977 5 N -0.423 5.423 6 C 0.062 3.938 7 C -0.069 4.069 8 C 0.592 3.408 9 O -0.569 6.569 10 N -0.598 5.598 11 C 0.075 3.925 12 C 0.111 3.889 13 C 0.113 3.887 14 N -0.708 5.708 15 C 0.535 3.465 16 O -0.563 6.563 17 C -0.110 4.110 18 S -0.179 6.179 19 C -0.528 4.528 20 H 0.064 0.936 21 C 0.045 3.955 22 N -0.916 5.916 23 Si 0.914 3.086 24 H -0.261 1.261 25 H -0.259 1.259 26 H -0.239 1.239 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.155 0.845 31 H 0.206 0.794 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.129 0.871 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.420 0.580 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.309 23.330 0.292 38.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C -0.241 4.241 4 C -0.111 4.111 5 N -0.098 5.098 6 C -0.078 4.078 7 C -0.182 4.182 8 C 0.380 3.620 9 O -0.447 6.447 10 N -0.330 5.330 11 C -0.066 4.066 12 C -0.012 4.012 13 C -0.013 4.013 14 N -0.363 5.363 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.261 4.261 18 S 0.048 5.952 19 C -0.675 4.675 20 H 0.082 0.918 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.736 3.264 24 H -0.185 1.185 25 H -0.184 1.184 26 H -0.163 1.163 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.173 0.827 31 H 0.223 0.777 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.147 0.853 39 H 0.104 0.896 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.258 0.742 43 H 0.138 0.862 44 H 0.132 0.868 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 29.153 24.187 0.467 37.884 hybrid contribution -0.061 -1.586 0.368 1.629 sum 29.092 22.602 0.836 36.849 Atomic orbital electron populations 1.20185 0.90295 1.02173 1.01560 1.20021 0.95447 0.92026 1.06513 1.20954 0.92177 0.98694 1.12313 1.22487 1.00139 0.82175 1.06279 1.44046 1.04640 1.07000 1.54157 1.22398 0.85428 0.95104 1.04876 1.19767 0.85659 0.92318 1.20443 1.17527 0.76886 0.84410 0.83192 1.90840 1.49939 1.70553 1.33359 1.47808 1.60621 1.15054 1.09531 1.22063 1.00315 0.99382 0.84883 1.21657 0.91129 0.83172 1.05274 1.21599 0.94817 0.83331 1.01534 1.45491 1.08272 1.09736 1.72778 1.20017 0.82474 0.89938 0.75483 1.90699 1.59014 1.44793 1.49651 1.23258 0.98160 0.97217 1.07417 1.84764 1.06538 1.09944 1.93981 1.22449 0.98617 0.90769 1.55701 0.91772 1.25558 1.00218 0.96898 0.93356 1.70015 1.21992 1.14948 1.48414 0.85872 0.79429 0.80780 0.80325 1.18539 1.18362 1.16296 0.92406 0.89728 0.94006 0.82703 0.77715 0.88398 0.91479 0.86390 0.90182 0.88638 0.91233 0.85291 0.89621 0.94474 0.91116 0.74187 0.86187 0.86799 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.20 71.24 0.73 -1.06 16 2 C -0.13 -2.71 6.21 -19.56 -0.12 -2.83 16 3 C -0.22 -3.25 10.76 22.01 0.24 -3.01 16 4 C 0.02 0.24 11.37 83.48 0.95 1.19 16 5 N -0.42 -5.45 3.16 -534.31 -1.69 -7.14 16 6 C 0.06 0.34 10.89 127.77 1.39 1.74 16 7 C -0.07 -1.38 4.79 40.35 0.19 -1.19 16 8 C 0.59 13.71 6.61 86.44 0.57 14.28 16 9 O -0.57 -18.28 16.66 -4.33 -0.07 -18.35 16 10 N -0.60 -9.66 2.87 -851.51 -2.45 -12.11 16 11 C 0.08 0.68 10.22 127.77 1.31 1.99 16 12 C 0.11 1.67 5.53 86.38 0.48 2.15 16 13 C 0.11 2.53 6.00 86.38 0.52 3.05 16 14 N -0.71 -16.81 5.56 -463.04 -2.57 -19.38 16 15 C 0.54 18.73 7.85 87.66 0.69 19.42 16 16 O -0.56 -24.91 15.86 -3.04 -0.05 -24.96 16 17 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 18 S -0.18 -9.14 18.55 -56.49 -1.05 -10.19 16 19 C -0.53 -30.87 10.04 67.95 0.68 -30.19 16 20 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 21 C 0.05 2.67 5.50 84.86 0.47 3.14 16 22 N -0.92 -55.97 13.97 21.65 0.30 -55.67 16 23 Si 0.91 45.48 27.74 68.60 1.90 47.39 16 24 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.24 -11.97 6.74 99.48 0.67 -11.30 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 0.99 7.96 -2.39 -0.02 0.97 16 30 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.21 0.43 8.06 -2.91 -0.02 0.40 16 32 H 0.10 0.14 7.92 -2.39 -0.02 0.12 16 33 H 0.07 0.60 7.95 -2.39 -0.02 0.58 16 34 H 0.12 0.02 8.12 -2.39 -0.02 0.00 16 35 H 0.08 0.36 7.92 -2.39 -0.02 0.34 16 36 H 0.09 0.60 8.03 -2.39 -0.02 0.59 16 37 H 0.07 0.79 7.00 -2.39 -0.02 0.77 16 38 H 0.13 0.96 8.07 -2.39 -0.02 0.94 16 39 H 0.09 1.52 7.36 -2.39 -0.02 1.50 16 40 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.42 6.70 8.47 -92.71 -0.79 5.91 16 43 H 0.12 4.00 8.14 -2.40 -0.02 3.98 16 44 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 45 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -87.13 397.55 3.03 -84.10 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.17 Total: 11.31 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: 8.52 Total: 4.99 kcal Atomic # 7 Polarization: -87.89 SS G_CDS: -6.41 Total: -94.29 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.12 Total: -43.31 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.90 Total: 47.39 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.05 Total: -10.19 kcal Total: -87.13 3.03 -84.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758913020.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.914 kcal (2) G-P(sol) polarization free energy of solvation -87.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds