Wall clock time and date at job start Tue Mar 31 2020 22:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00194 * 2 1 4 4 H 1.48500 * 109.46897 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47299 * 29.99421 * 3 2 1 6 6 H 1.48498 * 109.47366 * 149.99829 * 3 2 1 7 7 C 1.38805 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99678 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47220 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99959 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00100 * 180.02562 * 11 10 9 14 14 C 1.47584 * 134.49122 * 180.02562 * 13 11 10 15 15 C 1.53944 * 86.11517 * 155.35372 * 14 13 11 16 16 N 1.46511 * 113.73775 * 137.95011 * 15 14 13 17 17 C 1.34771 * 119.99478 * 156.92606 * 16 15 14 18 18 O 1.21281 * 120.00572 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00042 * 180.02562 * 17 16 15 20 20 C 1.56273 * 116.74709 * 62.39588 * 19 17 16 21 21 C 1.54658 * 103.25770 * 158.87734 * 20 19 17 22 22 N 1.49517 * 105.28624 * 0.72552 * 21 20 19 23 23 C 1.49518 * 105.92347 * 71.25735 * 22 21 20 24 24 C 1.54971 * 105.24603 * 288.72760 * 23 22 21 25 25 C 1.50469 * 102.03330 * 324.85028 * 22 21 20 26 26 C 1.47809 * 134.45951 * 359.86344 * 13 11 10 27 27 H 0.97001 * 119.99887 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46940 * 60.00115 * 10 9 7 29 29 H 1.09003 * 109.47027 * 299.99850 * 10 9 7 30 30 H 1.08999 * 113.77374 * 41.05175 * 14 13 11 31 31 H 1.09007 * 113.76754 * 269.65345 * 14 13 11 32 32 H 1.08994 * 113.73927 * 269.14927 * 15 14 13 33 33 H 0.96991 * 120.00352 * 336.92196 * 16 15 14 34 34 H 1.09003 * 110.59470 * 40.45864 * 20 19 17 35 35 H 1.08999 * 110.85264 * 277.41542 * 20 19 17 36 36 H 1.09005 * 110.28096 * 241.77462 * 21 20 19 37 37 H 1.09000 * 110.35964 * 119.71806 * 21 20 19 38 38 H 1.09005 * 110.27582 * 47.69934 * 23 22 21 39 39 H 1.09002 * 110.27834 * 169.78521 * 23 22 21 40 40 H 1.09007 * 110.67639 * 240.92864 * 24 23 22 41 41 H 1.08997 * 110.70091 * 117.76864 * 24 23 22 42 42 H 1.09002 * 111.91007 * 171.59817 * 25 22 21 43 43 H 1.08995 * 111.90966 * 297.73752 * 25 22 21 44 44 H 1.08998 * 113.77156 * 90.37530 * 26 13 11 45 45 H 1.08999 * 113.83066 * 318.92087 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.6888 -7.8108 -0.0005 15 6 4.0887 -7.8536 -0.6396 16 7 4.9532 -8.9043 -0.0962 17 6 5.9849 -9.3724 -0.8262 18 8 6.1975 -8.9243 -1.9329 19 6 6.8738 -10.4536 -0.2677 20 6 6.1986 -11.8280 0.0440 21 6 7.3898 -12.8144 0.0530 22 7 8.5975 -11.9765 -0.2205 23 6 8.8220 -11.1650 1.0151 24 6 7.6725 -10.1259 1.0347 25 6 8.0562 -10.9486 -1.1768 26 6 4.3166 -6.4717 -0.0012 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8895 30 1 1.8952 -8.1683 -0.6566 31 1 2.6476 -8.2488 0.9968 32 1 4.0743 -7.8364 -1.7293 33 1 4.7830 -9.2630 0.7887 34 1 5.4866 -12.0916 -0.7381 35 1 5.7087 -11.8077 1.0175 36 1 7.2653 -13.5642 -0.7285 37 1 7.4764 -13.2956 1.0272 38 1 8.7725 -11.8010 1.8990 39 1 9.7869 -10.6604 0.9655 40 1 8.0699 -9.1115 0.9973 41 1 7.0450 -10.2621 1.9154 42 1 8.7779 -10.1556 -1.3729 43 1 7.6967 -11.4019 -2.1005 44 1 4.7548 -6.5151 0.9959 45 1 4.8199 -5.7621 -0.6579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759210886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:37 Heat of formation + Delta-G solvation = -5.162720 kcal Electronic energy + Delta-G solvation = -26398.498604 eV Core-core repulsion = 22544.117817 eV Total energy + Delta-G solvation = -3854.380787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.69375 -40.48004 -38.99400 -37.46467 -34.23187 -32.45003 -31.39776 -31.25612 -30.19476 -28.62987 -27.69387 -26.37043 -25.47399 -23.62761 -23.08274 -21.51978 -21.29841 -19.99057 -19.06288 -17.79969 -17.44911 -17.07346 -16.70988 -16.61005 -15.92176 -15.64053 -15.48908 -14.84132 -14.80883 -14.54823 -14.03191 -13.88082 -13.55409 -13.40020 -13.19556 -12.99663 -12.92205 -12.78794 -12.68302 -12.48037 -12.25199 -11.99643 -11.85712 -11.80009 -11.56882 -11.26628 -11.07679 -11.04037 -10.85863 -10.78348 -10.28585 -9.85027 -9.63596 -9.59637 -9.42226 -9.08637 -8.73000 -8.27424 -6.53423 -6.23691 -3.94852 2.06925 2.37566 2.78595 3.04690 3.21341 3.22732 3.25892 3.28824 3.50971 3.84542 3.87383 4.05245 4.17995 4.19543 4.39153 4.43511 4.45627 4.51996 4.65031 4.76838 4.84063 4.93632 4.97284 5.03611 5.11487 5.11796 5.16014 5.23241 5.29179 5.29269 5.38570 5.38997 5.46192 5.51275 5.52582 5.57634 5.84271 5.89543 5.91717 6.04259 6.08369 6.10884 6.97925 7.57707 7.68720 7.73623 8.33274 8.44974 9.21568 10.83754 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.001882 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.854047 B =14871.831632 C =15553.926033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.145 4.145 11 C 0.560 3.440 12 O -0.512 6.512 13 N -0.649 5.649 14 C 0.103 3.897 15 C 0.111 3.889 16 N -0.715 5.715 17 C 0.555 3.445 18 O -0.526 6.526 19 C -0.134 4.134 20 C -0.135 4.135 21 C 0.012 3.988 22 N -0.466 5.466 23 C 0.012 3.988 24 C -0.135 4.135 25 C 0.040 3.960 26 C 0.091 3.909 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.403 0.597 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.431 -26.856 3.447 32.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.296 4.296 11 C 0.350 3.650 12 O -0.385 6.385 13 N -0.389 5.389 14 C -0.021 4.021 15 C 0.005 3.995 16 N -0.367 5.367 17 C 0.340 3.660 18 O -0.401 6.401 19 C -0.139 4.139 20 C -0.174 4.174 21 C -0.117 4.117 22 N -0.186 5.186 23 C -0.117 4.117 24 C -0.174 4.174 25 C -0.089 4.089 26 C -0.034 4.034 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.147 0.853 33 H 0.238 0.762 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.105 0.895 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.101 -26.948 2.428 31.486 hybrid contribution 1.079 1.653 0.928 2.181 sum 17.181 -25.296 3.356 30.762 Atomic orbital electron populations 1.70017 1.05953 1.27499 1.46774 1.25001 0.95049 0.99056 0.94493 0.86152 0.79385 0.81480 0.78395 1.20219 1.20727 1.19692 1.22853 0.94902 0.91527 1.59072 0.90896 1.85399 1.04817 0.96385 1.96736 1.23481 1.06582 0.94565 1.04946 1.20039 0.85366 0.85077 0.74533 1.90725 1.14781 1.84894 1.48093 1.49781 1.07361 1.05539 1.76209 1.23366 0.96437 0.81473 1.00815 1.23184 0.89251 0.86215 1.00833 1.45892 1.30294 1.40071 1.20428 1.19440 0.80123 0.81551 0.84840 1.90758 1.70791 1.58839 1.19696 1.23806 0.97043 0.94902 0.98178 1.23234 0.98820 0.92651 1.02736 1.23619 0.88564 0.96711 1.02766 1.69994 1.28745 1.13100 1.06721 1.23681 0.98734 0.95034 0.94204 1.23276 0.97496 1.01044 0.95565 1.24358 0.93573 0.94842 0.96129 1.23683 0.82127 0.96298 1.01244 0.92148 0.89279 0.89169 0.89177 0.89756 0.85314 0.76201 0.90549 0.90341 0.89534 0.90129 0.90123 0.89473 0.90439 0.90345 0.88820 0.88864 0.89529 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.00 5.91 36.00 0.21 -2.79 16 11 C 0.56 10.79 8.07 -10.99 -0.09 10.70 16 12 O -0.51 -11.88 16.59 5.55 0.09 -11.79 16 13 N -0.65 -8.93 3.61 -178.35 -0.64 -9.57 16 14 C 0.10 1.00 8.59 -2.97 -0.03 0.98 16 15 C 0.11 0.96 4.40 -70.15 -0.31 0.65 16 16 N -0.72 -4.56 5.37 -55.35 -0.30 -4.86 16 17 C 0.56 4.61 7.32 -10.99 -0.08 4.53 16 18 O -0.53 -6.58 16.19 5.56 0.09 -6.49 16 19 C -0.13 -0.79 1.39 -149.91 -0.21 -1.00 16 20 C -0.14 -0.58 6.02 -24.10 -0.15 -0.72 16 21 C 0.01 0.06 6.61 -1.49 -0.01 0.05 16 22 N -0.47 -2.93 6.94 -221.85 -1.54 -4.47 16 23 C 0.01 0.06 6.62 -1.32 -0.01 0.05 16 24 C -0.13 -0.59 6.07 -23.95 -0.15 -0.74 16 25 C 0.04 0.28 6.06 0.44 0.00 0.28 16 26 C 0.09 0.90 8.43 -2.85 -0.02 0.88 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 29 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.64 8.11 -51.92 -0.42 0.22 16 32 H 0.13 1.33 7.51 -51.93 -0.39 0.94 16 33 H 0.40 1.52 8.71 -40.82 -0.36 1.16 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.22 7.82 -51.93 -0.41 -0.18 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.29 7.69 -51.93 -0.40 -0.11 16 38 H 0.08 0.30 7.69 -51.93 -0.40 -0.10 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.23 7.82 -51.93 -0.41 -0.17 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -36.72 384.89 -10.60 -47.33 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -6.97 Total: -2.92 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -0.63 Total: -0.14 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -1.75 Total: -44.35 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.18 Total: -18.28 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.72 -10.60 -47.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759210886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.164 kcal (2) G-P(sol) polarization free energy of solvation -36.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds