Wall clock time and date at job start Tue Mar 31 2020 22:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00194 * 2 1 4 4 H 1.48500 * 109.46897 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47299 * 29.99421 * 3 2 1 6 6 H 1.48498 * 109.47366 * 149.99829 * 3 2 1 7 7 C 1.38805 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99678 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47220 * 180.02562 * 10 9 7 12 12 O 1.21290 * 119.99959 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00100 * 180.02562 * 11 10 9 14 14 C 1.47584 * 134.49122 * 180.02562 * 13 11 10 15 15 C 1.53944 * 86.11517 * 155.35372 * 14 13 11 16 16 N 1.46511 * 113.73775 * 137.95011 * 15 14 13 17 17 C 1.34771 * 119.99478 * 156.92606 * 16 15 14 18 18 O 1.21281 * 120.00572 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00042 * 180.02562 * 17 16 15 20 20 C 1.56273 * 116.74709 * 62.39588 * 19 17 16 21 21 C 1.54658 * 103.25770 * 158.87734 * 20 19 17 22 22 N 1.49517 * 105.28624 * 0.72552 * 21 20 19 23 23 C 1.49518 * 105.92347 * 71.25735 * 22 21 20 24 24 C 1.54971 * 105.24603 * 288.72760 * 23 22 21 25 25 C 1.50469 * 102.03330 * 324.85028 * 22 21 20 26 26 C 1.47809 * 134.45951 * 359.86344 * 13 11 10 27 27 H 0.97001 * 119.99887 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46940 * 60.00115 * 10 9 7 29 29 H 1.09003 * 109.47027 * 299.99850 * 10 9 7 30 30 H 1.08999 * 113.77374 * 41.05175 * 14 13 11 31 31 H 1.09007 * 113.76754 * 269.65345 * 14 13 11 32 32 H 1.08994 * 113.73927 * 269.14927 * 15 14 13 33 33 H 0.96991 * 120.00352 * 336.92196 * 16 15 14 34 34 H 1.09003 * 110.59470 * 40.45864 * 20 19 17 35 35 H 1.08999 * 110.85264 * 277.41542 * 20 19 17 36 36 H 1.09005 * 110.28096 * 241.77462 * 21 20 19 37 37 H 1.09000 * 110.35964 * 119.71806 * 21 20 19 38 38 H 1.09005 * 110.27582 * 47.69934 * 23 22 21 39 39 H 1.09002 * 110.27834 * 169.78521 * 23 22 21 40 40 H 1.09007 * 110.67639 * 240.92864 * 24 23 22 41 41 H 1.08997 * 110.70091 * 117.76864 * 24 23 22 42 42 H 1.09002 * 111.91007 * 171.59817 * 25 22 21 43 43 H 1.08995 * 111.90966 * 297.73752 * 25 22 21 44 44 H 1.08998 * 113.77156 * 90.37530 * 26 13 11 45 45 H 1.08999 * 113.83066 * 318.92087 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0003 14 6 2.6888 -7.8108 -0.0005 15 6 4.0887 -7.8536 -0.6396 16 7 4.9532 -8.9043 -0.0962 17 6 5.9849 -9.3724 -0.8262 18 8 6.1975 -8.9243 -1.9329 19 6 6.8738 -10.4536 -0.2677 20 6 6.1986 -11.8280 0.0440 21 6 7.3898 -12.8144 0.0530 22 7 8.5975 -11.9765 -0.2205 23 6 8.8220 -11.1650 1.0151 24 6 7.6725 -10.1259 1.0347 25 6 8.0562 -10.9486 -1.1768 26 6 4.3166 -6.4717 -0.0012 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7314 0.8905 29 1 3.1244 -3.7314 -0.8895 30 1 1.8952 -8.1683 -0.6566 31 1 2.6476 -8.2488 0.9968 32 1 4.0743 -7.8364 -1.7293 33 1 4.7830 -9.2630 0.7887 34 1 5.4866 -12.0916 -0.7381 35 1 5.7087 -11.8077 1.0175 36 1 7.2653 -13.5642 -0.7285 37 1 7.4764 -13.2956 1.0272 38 1 8.7725 -11.8010 1.8990 39 1 9.7869 -10.6604 0.9655 40 1 8.0699 -9.1115 0.9973 41 1 7.0450 -10.2621 1.9154 42 1 8.7779 -10.1556 -1.3729 43 1 7.6967 -11.4019 -2.1005 44 1 4.7548 -6.5151 0.9959 45 1 4.8199 -5.7621 -0.6579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759210886.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:36 Heat of formation + Delta-G solvation = -34.743437 kcal Electronic energy + Delta-G solvation = -26399.781320 eV Core-core repulsion = 22544.117817 eV Total energy + Delta-G solvation = -3855.663503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.21294 -41.41987 -39.91724 -38.68984 -35.04419 -34.61166 -32.17151 -31.58661 -31.38913 -29.08895 -28.85625 -27.69410 -27.19681 -24.37903 -23.41620 -22.35769 -21.75305 -20.77040 -20.18378 -19.54291 -18.24745 -17.86159 -17.85708 -17.13083 -16.93658 -16.86858 -16.49660 -16.26216 -15.93381 -15.72082 -15.46373 -14.82539 -14.40720 -14.21070 -14.15036 -13.81851 -13.77120 -13.73861 -13.69667 -13.19715 -13.17438 -13.11670 -12.90929 -12.69651 -12.62779 -12.44613 -12.38970 -12.23089 -11.76484 -11.64400 -11.21573 -11.16736 -11.15337 -10.87060 -10.33384 -10.25958 -10.01298 -9.86008 -8.71187 -8.37169 -6.16208 1.14219 1.39065 1.41197 1.42121 1.47767 1.52645 1.76516 2.18556 2.24932 2.82308 2.96939 3.10137 3.26650 3.44064 3.48185 3.54252 3.71707 3.84735 3.93560 4.01074 4.10397 4.17790 4.22524 4.33289 4.36819 4.41186 4.49952 4.55408 4.55708 4.57021 4.65540 4.79158 4.82052 4.85524 4.89222 4.96649 4.97208 5.06219 5.17486 5.34318 5.39159 5.52106 5.72691 6.17250 6.38214 6.48768 7.02473 7.03913 7.12942 8.72116 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.001882 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.854047 B =14871.831632 C =15553.926033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.121 4.121 11 C 0.559 3.441 12 O -0.564 6.564 13 N -0.648 5.648 14 C 0.105 3.895 15 C 0.127 3.873 16 N -0.696 5.696 17 C 0.557 3.443 18 O -0.573 6.573 19 C -0.132 4.132 20 C -0.127 4.127 21 C 0.012 3.988 22 N -0.483 5.483 23 C 0.012 3.988 24 C -0.127 4.127 25 C 0.035 3.965 26 C 0.090 3.910 27 H 0.272 0.728 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.421 0.579 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.605 -27.944 5.295 34.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.079 5.921 10 C -0.272 4.272 11 C 0.348 3.652 12 O -0.442 6.442 13 N -0.385 5.385 14 C -0.018 4.018 15 C 0.020 3.980 16 N -0.348 5.348 17 C 0.344 3.656 18 O -0.452 6.452 19 C -0.137 4.137 20 C -0.166 4.166 21 C -0.117 4.117 22 N -0.203 5.203 23 C -0.117 4.117 24 C -0.165 4.165 25 C -0.095 4.095 26 C -0.033 4.033 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.130 0.870 33 H 0.260 0.740 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.135 0.865 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 18.328 -28.107 4.313 33.831 hybrid contribution 0.519 1.800 0.329 1.902 sum 18.847 -26.307 4.642 32.693 Atomic orbital electron populations 1.70179 1.07951 1.28689 1.47824 1.26147 0.96010 1.03341 0.93656 0.84938 0.78207 0.75923 0.78815 1.19349 1.20124 1.18167 1.23181 0.95296 0.91898 1.59115 0.89999 1.85554 1.10309 0.99211 1.97044 1.23279 1.03530 0.94032 1.06321 1.19654 0.85133 0.85583 0.74825 1.90700 1.16900 1.85591 1.51052 1.49687 1.08827 1.06308 1.73667 1.23669 0.96740 0.78578 1.02765 1.22731 0.88993 0.86394 0.99841 1.45649 1.29180 1.39017 1.20949 1.19824 0.80193 0.81460 0.84171 1.90748 1.72050 1.60485 1.21871 1.23689 0.96522 0.94962 0.98518 1.23232 0.98485 0.91055 1.03842 1.23675 0.87973 0.96515 1.03536 1.69966 1.29693 1.13288 1.07336 1.23737 0.98708 0.95216 0.94049 1.23275 0.97349 1.00584 0.95337 1.24288 0.93988 0.94841 0.96335 1.24023 0.79562 0.96682 1.03077 0.91910 0.87477 0.87916 0.89718 0.86327 0.87029 0.74043 0.91182 0.87816 0.89975 0.88447 0.88457 0.89958 0.91032 0.87838 0.90172 0.90218 0.86468 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.55 -31.55 9.50 67.96 0.65 -30.90 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.36 20.57 -56.49 -1.16 -9.53 16 10 C -0.12 -4.95 5.91 71.24 0.42 -4.53 16 11 C 0.56 21.39 8.07 87.66 0.71 22.10 16 12 O -0.56 -26.84 16.59 -3.06 -0.05 -26.89 16 13 N -0.65 -16.67 3.61 -836.57 -3.02 -19.69 16 14 C 0.10 1.78 8.59 86.48 0.74 2.52 16 15 C 0.13 1.90 4.40 46.74 0.21 2.11 16 16 N -0.70 -6.73 5.37 -447.43 -2.40 -9.14 16 17 C 0.56 8.29 7.32 87.66 0.64 8.93 16 18 O -0.57 -14.20 16.19 -3.03 -0.05 -14.25 16 19 C -0.13 -1.28 1.39 -49.20 -0.07 -1.35 16 20 C -0.13 -0.72 6.02 32.30 0.19 -0.53 16 21 C 0.01 0.08 6.61 86.36 0.57 0.65 16 22 N -0.48 -5.40 6.94 -855.81 -5.94 -11.34 16 23 C 0.01 0.08 6.62 86.47 0.57 0.65 16 24 C -0.13 -0.72 6.07 32.40 0.20 -0.53 16 25 C 0.03 0.48 6.06 87.06 0.53 1.01 16 26 C 0.09 1.52 8.43 86.43 0.73 2.25 16 27 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 28 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 29 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.12 1.29 8.11 -2.38 -0.02 1.27 16 32 H 0.11 2.19 7.51 -2.39 -0.02 2.17 16 33 H 0.42 1.25 8.71 -92.72 -0.81 0.44 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.50 16 35 H 0.10 0.10 7.82 -2.39 -0.02 0.08 16 36 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.10 0.36 7.69 -2.39 -0.02 0.35 16 38 H 0.10 0.38 7.69 -2.38 -0.02 0.36 16 39 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.07 0.52 8.14 -2.38 -0.02 0.51 16 41 H 0.10 0.11 7.82 -2.39 -0.02 0.09 16 42 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -84.19 384.89 -3.57 -87.76 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.19 Total: 9.47 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 6.55 Total: 3.62 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -11.08 Total: -96.00 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.10 Total: -41.14 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.53 kcal Total: -84.19 -3.57 -87.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759210886.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.018 kcal (2) G-P(sol) polarization free energy of solvation -84.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds