Wall clock time and date at job start Tue Mar 31 2020 23:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38044 * 126.28796 * 2 1 4 4 C 1.47427 * 126.42087 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99743 * 310.02094 * 4 3 2 6 6 N 1.34776 * 120.00185 * 130.00655 * 4 3 2 7 7 C 1.47146 * 118.11435 * 4.63909 * 6 4 3 8 8 C 1.51590 * 106.29249 * 94.34770 * 7 6 4 9 9 S 1.81208 * 111.25701 * 91.78346 * 8 7 6 10 10 O 1.42099 * 109.46640 * 201.17162 * 9 8 7 11 11 C 1.82301 * 105.26174 * 318.74861 * 9 8 7 12 12 C 1.51048 * 112.27711 * 318.25752 * 11 9 8 13 13 H 1.09001 * 109.48590 * 334.04336 * 12 11 9 14 14 C 1.53004 * 109.49261 * 213.97124 * 12 11 9 15 15 C 1.39391 * 118.11516 * 184.89929 * 6 4 3 16 16 C 1.41297 * 107.17034 * 179.97438 * 3 2 1 17 17 N 1.30451 * 108.02290 * 0.26330 * 16 3 2 18 18 N 1.34261 * 126.29424 * 179.97438 * 2 1 3 19 19 C 1.46494 * 125.75042 * 0.02562 * 18 2 1 20 20 C 1.50703 * 109.47512 * 90.00085 * 19 18 2 21 21 H 1.08005 * 119.99685 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00655 * 179.97438 * 20 19 18 23 23 N 1.31509 * 119.99305 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00291 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47092 * 59.99876 * 24 22 20 26 26 H 1.48503 * 109.46922 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46878 * 300.00081 * 24 22 20 28 28 H 1.08995 * 109.47461 * 89.99754 * 1 2 3 29 29 H 1.09001 * 109.46730 * 209.99781 * 1 2 3 30 30 H 1.09002 * 109.47140 * 329.99077 * 1 2 3 31 31 H 1.09001 * 110.03173 * 213.51415 * 7 6 4 32 32 H 1.08998 * 110.03486 * 334.99141 * 7 6 4 33 33 H 1.09004 * 109.17476 * 331.29699 * 8 7 6 34 34 H 1.08995 * 109.02654 * 212.18008 * 8 7 6 35 35 H 1.09000 * 108.92232 * 197.53619 * 11 9 8 36 36 H 1.08998 * 108.92660 * 78.97695 * 11 9 8 37 37 H 1.09000 * 109.46805 * 300.12257 * 14 12 11 38 38 H 1.08996 * 109.47398 * 60.12255 * 14 12 11 39 39 H 1.08997 * 109.46724 * 180.12546 * 14 12 11 40 40 H 1.08996 * 109.04369 * 3.68621 * 15 6 4 41 41 H 1.08999 * 109.03621 * 122.55844 * 15 6 4 42 42 H 1.07997 * 125.99016 * 180.02562 * 16 3 2 43 43 H 1.09000 * 109.46975 * 209.99576 * 19 18 2 44 44 H 1.08993 * 109.47896 * 330.00064 * 19 18 2 45 45 H 0.97005 * 119.99749 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 1.0582 2.8998 -0.8056 6 7 2.4023 3.3866 0.8946 7 6 3.4749 2.9100 1.7820 8 6 4.7809 3.2870 1.1111 9 16 5.3619 4.9100 1.6697 10 8 6.2672 5.4438 0.7133 11 6 3.8697 5.9547 1.7432 12 6 2.9570 5.7335 0.5601 13 1 3.5412 5.3761 -0.2879 14 6 2.2723 7.0508 0.1903 15 6 1.8858 4.6808 0.9292 16 6 3.6591 0.6499 0.0006 17 7 3.6341 -0.6543 -0.0048 18 7 2.3017 -1.0821 0.0005 19 6 1.8501 -2.4757 0.0006 20 6 1.6958 -2.9539 -1.4202 21 1 1.9121 -2.2863 -2.2412 22 6 1.2785 -4.2437 -1.6721 23 7 1.0157 -5.0567 -0.6724 24 14 1.0879 -4.8366 -3.4332 25 1 2.3944 -4.7392 -4.1324 26 1 0.6300 -6.2492 -3.4330 27 1 0.0872 -3.9924 -4.1341 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5140 31 1 3.3993 3.3972 2.7542 32 1 3.4097 1.8283 1.8991 33 1 4.6343 3.3126 0.0312 34 1 5.5336 2.5362 1.3514 35 1 4.1720 7.0017 1.7655 36 1 3.3234 5.7268 2.6584 37 1 1.6894 7.4081 1.0392 38 1 3.0276 7.7924 -0.0697 39 1 1.6121 6.8903 -0.6621 40 1 1.0587 4.7527 0.2229 41 1 1.5140 4.8885 1.9325 42 1 4.5449 1.2677 0.0012 43 1 2.5846 -3.0956 0.5147 44 1 0.8914 -2.5470 0.5140 45 1 0.7217 -5.9640 -0.8496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771915229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:45 Heat of formation + Delta-G solvation = 5.773962 kcal Electronic energy + Delta-G solvation = -28087.953949 eV Core-core repulsion = 24234.047413 eV Total energy + Delta-G solvation = -3853.906537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16087 -39.84411 -36.98974 -35.93368 -34.93178 -33.84425 -32.17254 -31.45702 -31.07177 -28.02554 -27.63934 -26.84790 -25.88174 -23.92383 -23.30745 -21.67780 -20.82131 -19.76558 -18.66617 -17.67647 -17.21235 -16.82851 -16.59837 -16.12800 -15.88846 -15.33378 -15.07393 -14.54628 -14.42443 -14.31943 -13.94036 -13.71972 -13.54248 -13.21274 -12.99359 -12.84885 -12.54791 -12.53457 -12.34823 -12.16096 -12.12430 -11.99259 -11.78552 -11.68197 -11.56044 -11.22868 -11.13526 -11.08330 -10.90186 -10.39458 -10.32338 -10.18261 -9.96395 -9.55514 -8.76783 -8.72543 -8.62337 -8.40726 -7.92212 -6.35781 -4.43536 1.26447 2.20127 2.30458 2.73670 3.02602 3.19485 3.23153 3.25942 3.34537 3.44060 3.56721 4.23116 4.35889 4.39958 4.70485 4.75749 4.80798 4.93164 4.97571 5.01629 5.12419 5.15561 5.23691 5.34669 5.41714 5.50053 5.56240 5.58177 5.61435 5.75785 5.82912 5.90168 5.92699 5.94687 5.95553 6.29236 6.40751 6.71452 6.78863 6.86602 7.10965 7.32384 7.53873 7.74381 7.75845 8.32895 8.40446 8.62115 9.23711 10.72275 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.002818 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.459452 B = 9933.052415 C =10508.944058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.151 3.849 3 C -0.328 4.328 4 C 0.600 3.400 5 O -0.540 6.540 6 N -0.606 5.606 7 C 0.136 3.864 8 C -0.473 4.473 9 S 1.236 4.764 10 O -0.851 6.851 11 C -0.439 4.439 12 C -0.097 4.097 13 H 0.064 0.936 14 C -0.141 4.141 15 C 0.110 3.890 16 C 0.051 3.949 17 N -0.293 5.293 18 N -0.311 5.311 19 C 0.252 3.748 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.069 3.931 23 N -0.890 5.890 24 Si 0.907 3.093 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.177 0.823 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.961 19.562 12.665 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.014 3.986 3 C -0.344 4.344 4 C 0.390 3.610 5 O -0.416 6.416 6 N -0.338 5.338 7 C 0.013 3.987 8 C -0.611 4.611 9 S 1.434 4.566 10 O -0.846 6.846 11 C -0.576 4.576 12 C -0.118 4.118 13 H 0.083 0.917 14 C -0.200 4.200 15 C -0.016 4.016 16 C -0.135 4.135 17 N -0.113 5.113 18 N -0.089 5.089 19 C 0.135 3.865 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.135 4.135 23 N -0.528 5.528 24 Si 0.734 3.266 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.084 0.916 42 H 0.194 0.806 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.068 18.577 12.496 22.755 hybrid contribution -1.276 0.481 -3.010 3.305 sum 2.793 19.058 9.486 21.471 Atomic orbital electron populations 1.20423 0.87165 1.02897 1.04071 1.21297 0.94618 0.86554 0.96083 1.19545 0.93549 0.92176 1.29117 1.17712 0.79551 0.84665 0.79064 1.90724 1.34079 1.78827 1.37986 1.46263 1.39153 1.11266 1.37119 1.21248 0.82520 1.02841 0.92130 1.28188 1.05809 1.18041 1.09073 1.70299 0.84001 0.86576 1.15733 1.93135 1.49837 1.75531 1.66115 1.27754 1.13896 1.12014 1.03914 1.21410 0.96994 0.97018 0.96331 0.91726 1.21810 1.00566 0.95899 1.01698 1.20579 0.96745 0.81531 1.02710 1.23920 0.96232 0.92431 1.00884 1.77162 0.98545 1.12092 1.23500 1.49323 1.02398 1.08182 1.48969 1.19832 0.96342 0.70905 0.99389 1.21229 1.47546 0.98154 0.91068 0.91725 1.24906 0.94390 0.95959 0.98293 1.69898 1.44467 1.07217 1.31173 0.86388 0.78945 0.77734 0.83523 1.19882 1.20844 1.19838 0.89484 0.90423 0.90743 0.89326 0.87292 0.88231 0.85190 0.87643 0.86247 0.92132 0.92660 0.92228 0.88174 0.91648 0.80576 0.92486 0.92613 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 9.85 36.01 0.35 -1.12 16 2 C 0.15 2.92 7.01 -81.60 -0.57 2.35 16 3 C -0.33 -5.76 4.90 -105.06 -0.51 -6.28 16 4 C 0.60 9.63 7.04 -12.52 -0.09 9.54 16 5 O -0.54 -10.38 16.08 5.27 0.08 -10.29 16 6 N -0.61 -6.91 2.26 -179.48 -0.40 -7.32 16 7 C 0.14 1.09 5.19 -4.40 -0.02 1.07 16 8 C -0.47 -3.82 4.08 36.44 0.15 -3.67 16 9 S 1.24 8.60 13.40 -107.50 -1.44 7.16 16 10 O -0.85 -12.14 18.14 -35.23 -0.64 -12.78 16 11 C -0.44 -2.77 5.28 36.18 0.19 -2.58 16 12 C -0.10 -0.90 2.45 -90.73 -0.22 -1.12 16 13 H 0.06 0.79 7.53 -51.93 -0.39 0.40 16 14 C -0.14 -1.20 8.89 37.16 0.33 -0.87 16 15 C 0.11 1.09 5.14 -6.81 -0.04 1.06 16 16 C 0.05 0.88 9.71 -16.98 -0.16 0.72 16 17 N -0.29 -6.11 12.50 30.86 0.39 -5.72 16 18 N -0.31 -6.78 3.56 -57.78 -0.21 -6.99 16 19 C 0.25 6.11 5.97 -5.20 -0.03 6.08 16 20 C -0.54 -14.52 9.39 -34.44 -0.32 -14.84 16 21 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 22 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 23 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 24 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.08 1.26 7.05 -51.93 -0.37 0.89 16 30 H 0.07 1.10 7.96 -51.93 -0.41 0.69 16 31 H 0.09 0.34 7.47 -51.93 -0.39 -0.05 16 32 H 0.11 1.04 5.42 -51.93 -0.28 0.76 16 33 H 0.10 1.13 7.21 -51.90 -0.37 0.75 16 34 H 0.13 0.81 7.79 -51.91 -0.40 0.40 16 35 H 0.11 0.67 7.68 -51.92 -0.40 0.27 16 36 H 0.12 0.39 7.20 -51.93 -0.37 0.02 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.05 0.47 8.10 -51.93 -0.42 0.05 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 1.23 6.41 -51.93 -0.33 0.90 16 41 H 0.07 0.48 7.62 -51.93 -0.40 0.09 16 42 H 0.18 2.41 5.23 -52.49 -0.27 2.14 16 43 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.06 1.33 7.01 -51.93 -0.36 0.96 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -36.79 368.82 -8.41 -45.20 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.42 Total: 0.84 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -1.05 Total: -7.94 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.51 Total: -43.60 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.55 Total: -23.07 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 8.60 SS G_CDS: -1.44 Total: 7.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.79 -8.41 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771915229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.974 kcal (2) G-P(sol) polarization free energy of solvation -36.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds