Wall clock time and date at job start Tue Mar 31 2020 22:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29516 * 121.52951 * 2 1 4 4 S 1.69487 * 107.83847 * 180.23335 * 3 2 1 5 5 C 1.72018 * 96.02868 * 359.72203 * 4 3 2 6 6 C 1.37902 * 105.36343 * 359.97438 * 5 4 3 7 7 C 1.47340 * 123.08609 * 179.97438 * 6 5 4 8 8 O 1.21608 * 120.00318 * 194.33055 * 7 6 5 9 9 N 1.34776 * 119.99706 * 14.33257 * 7 6 5 10 10 C 1.46499 * 120.00245 * 6.85133 * 9 7 6 11 11 C 1.50703 * 109.47074 * 262.10058 * 10 9 7 12 12 H 1.07998 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99732 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00137 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99859 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46955 * 60.00100 * 15 13 11 17 17 H 1.48499 * 109.46977 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47027 * 300.00141 * 15 13 11 19 19 C 1.46507 * 120.00073 * 186.85745 * 9 7 6 20 20 C 1.52996 * 109.46872 * 269.99812 * 19 9 7 21 21 N 1.46897 * 109.47218 * 179.97438 * 20 19 9 22 22 C 1.47016 * 110.99642 * 293.62940 * 21 20 19 23 23 C 1.53104 * 109.25568 * 177.60693 * 22 21 20 24 24 O 1.43008 * 109.25593 * 56.85171 * 23 22 21 25 25 C 1.43020 * 113.74079 * 301.32807 * 24 23 22 26 26 C 1.47016 * 111.00033 * 170.00145 * 21 20 19 27 27 H 1.08997 * 109.47448 * 270.27377 * 1 2 3 28 28 H 1.08999 * 109.46961 * 30.27383 * 1 2 3 29 29 H 1.08998 * 109.46896 * 150.27346 * 1 2 3 30 30 H 1.07994 * 127.31917 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.47101 * 22.09929 * 10 9 7 32 32 H 1.08997 * 109.47628 * 142.10296 * 10 9 7 33 33 H 0.96998 * 119.99853 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47153 * 149.99402 * 19 9 7 35 35 H 1.09002 * 109.47012 * 29.99151 * 19 9 7 36 36 H 1.09007 * 109.47294 * 59.99584 * 20 19 9 37 37 H 1.09003 * 109.47393 * 299.99902 * 20 19 9 38 38 H 1.08997 * 109.51122 * 297.54059 * 22 21 20 39 39 H 1.09003 * 109.50553 * 57.67627 * 22 21 20 40 40 H 1.09001 * 109.50439 * 296.91906 * 23 22 21 41 41 H 1.09000 * 109.53827 * 176.80848 * 23 22 21 42 42 H 1.09002 * 109.50375 * 298.73616 * 25 24 23 43 43 H 1.09005 * 109.53981 * 178.62890 * 25 24 23 44 44 H 1.09000 * 109.50320 * 302.32421 * 26 21 20 45 45 H 1.08995 * 109.50999 * 62.41179 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8311 0.7028 -0.0066 5 6 3.6017 -1.0020 -0.0011 6 6 2.2352 -1.1868 0.0063 7 6 1.6035 -2.5179 0.0123 8 8 0.4197 -2.6305 -0.2421 9 7 2.3379 -3.6109 0.2998 10 6 3.7236 -3.4643 0.7519 11 6 4.6564 -3.6627 -0.4149 12 1 4.2570 -3.8762 -1.3954 13 6 6.0198 -3.5706 -0.2310 14 7 6.5062 -3.3101 0.9628 15 14 7.1762 -3.8173 -1.6772 16 1 6.8857 -2.8026 -2.7218 17 1 8.5808 -3.6685 -1.2188 18 1 6.9812 -5.1774 -2.2405 19 6 1.7504 -4.9457 0.1599 20 6 1.0933 -5.3545 1.4797 21 7 0.5037 -6.6926 1.3394 22 6 -0.6173 -6.6772 0.3884 23 6 -1.1624 -8.0989 0.2274 24 8 -1.5464 -8.6047 1.5087 25 6 -0.4785 -8.6343 2.4597 26 6 0.0734 -7.2181 2.6433 27 1 -0.3634 0.0049 1.0276 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 4.3656 -1.7654 -0.0023 31 1 3.8670 -2.4663 1.1661 32 1 3.9366 -4.2097 1.5181 33 1 7.4653 -3.2449 1.0921 34 1 2.5318 -5.6618 -0.0941 35 1 0.9998 -4.9314 -0.6304 36 1 0.3118 -4.6383 1.7338 37 1 1.8438 -5.3688 2.2702 38 1 -1.4056 -6.0257 0.7654 39 1 -0.2705 -6.3089 -0.5771 40 1 -0.3902 -8.7385 -0.1999 41 1 -2.0295 -8.0842 -0.4329 42 1 0.3135 -9.2896 2.0972 43 1 -0.8506 -9.0066 3.4142 44 1 0.9245 -7.2446 3.3238 45 1 -0.7033 -6.5749 3.0567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179682025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:03 Heat of formation + Delta-G solvation = -11.072569 kcal Electronic energy + Delta-G solvation = -28090.877297 eV Core-core repulsion = 24236.240240 eV Total energy + Delta-G solvation = -3854.637057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.06838 -39.47729 -37.66059 -36.10091 -35.30111 -32.98536 -31.56190 -31.19058 -29.41455 -29.07612 -27.71293 -26.11542 -24.08149 -23.82485 -22.92967 -22.15280 -20.40690 -19.90728 -18.83003 -17.14078 -16.87791 -16.58867 -16.24542 -15.95217 -15.34724 -15.12882 -14.97480 -14.80658 -14.72268 -14.60369 -14.24612 -13.76921 -13.47457 -13.07806 -12.94928 -12.78881 -12.52138 -12.35524 -12.09007 -12.03338 -11.88302 -11.45914 -11.36859 -11.24829 -11.15917 -10.99589 -10.73417 -10.52799 -10.43864 -10.23674 -10.10003 -10.02632 -9.73359 -9.17641 -9.06331 -8.72020 -8.38805 -8.26110 -7.89208 -6.48545 -4.59631 1.10397 1.98818 2.28626 2.35636 3.09624 3.16087 3.18334 3.48212 3.78299 3.82941 4.07053 4.14574 4.81392 4.82486 4.96960 4.98690 5.09664 5.13081 5.20734 5.29856 5.47420 5.49757 5.55121 5.59697 5.66079 5.73841 5.77538 5.80157 5.90689 5.92487 5.93770 6.12018 6.18688 6.36824 6.41337 6.55784 6.64095 6.89744 6.95777 7.00235 7.07002 7.12096 7.34020 7.47265 7.70742 8.12914 8.51300 8.81402 9.08747 10.54664 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.004017 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.259186 B = 6969.449767 C = 9146.419057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.165 3.835 3 N -0.493 5.493 4 S 0.229 5.771 5 C -0.139 4.139 6 C -0.242 4.242 7 C 0.588 3.412 8 O -0.565 6.565 9 N -0.586 5.586 10 C 0.214 3.786 11 C -0.549 4.549 12 H 0.069 0.931 13 C 0.068 3.932 14 N -0.878 5.878 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.271 1.271 19 C 0.130 3.870 20 C 0.043 3.957 21 N -0.533 5.533 22 C 0.015 3.985 23 C 0.064 3.936 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.257 0.743 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.273 0.727 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 -4.116 1.448 9.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.014 4.014 3 N -0.313 5.313 4 S 0.383 5.617 5 C -0.286 4.286 6 C -0.261 4.261 7 C 0.376 3.624 8 O -0.447 6.447 9 N -0.315 5.315 10 C 0.094 3.906 11 C -0.587 4.587 12 H 0.087 0.913 13 C -0.138 4.138 14 N -0.514 5.514 15 Si 0.723 3.277 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.197 1.197 19 C 0.006 3.994 20 C -0.085 4.085 21 N -0.258 5.258 22 C -0.113 4.113 23 C -0.013 4.013 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.272 0.728 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.665 -2.443 1.297 8.149 hybrid contribution -0.113 -1.049 -0.330 1.106 sum -7.778 -3.492 0.968 8.581 Atomic orbital electron populations 1.20908 0.86378 1.05044 1.03448 1.21410 0.98938 0.87257 0.93769 1.76356 1.00583 1.26377 1.28008 1.83955 1.10626 0.99550 1.67537 1.30199 1.02104 1.03452 0.92826 1.20275 0.92561 0.95679 1.17585 1.17323 0.85283 0.83317 0.76500 1.90567 1.15294 1.86217 1.52634 1.47940 1.14912 1.04394 1.64295 1.20159 0.75430 0.99344 0.95677 1.21487 0.90912 1.50384 0.95942 0.91271 1.25057 0.98206 0.94169 0.96409 1.69911 1.14394 1.45817 1.21313 0.86528 0.79515 0.79487 0.82121 1.19622 1.20744 1.19656 1.21202 0.98275 0.84005 0.95891 1.22506 0.98481 0.87733 0.99798 1.62144 1.29789 1.24637 1.09259 1.22842 0.92734 0.97497 0.98239 1.22685 1.00124 0.93324 0.85150 1.87953 1.35679 1.84970 1.22200 1.22651 0.90103 0.95485 0.92971 1.22764 1.00002 0.96579 0.91670 0.90764 0.91469 0.86783 0.72773 0.92703 0.94227 0.91706 0.89175 0.90950 0.94303 0.90401 0.93850 0.89084 0.92218 0.88610 0.92202 0.88693 0.89567 0.94125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.54 9.72 36.01 0.35 -1.19 16 2 C 0.16 3.09 6.75 -83.19 -0.56 2.53 16 3 N -0.49 -9.27 11.97 32.50 0.39 -8.89 16 4 S 0.23 4.09 23.69 -107.50 -2.55 1.54 16 5 C -0.14 -2.77 8.79 30.61 0.27 -2.50 16 6 C -0.24 -4.81 5.65 -105.95 -0.60 -5.41 16 7 C 0.59 11.91 7.55 -12.56 -0.09 11.82 16 8 O -0.56 -11.62 13.49 5.27 0.07 -11.54 16 9 N -0.59 -11.50 2.46 -176.36 -0.43 -11.94 16 10 C 0.21 4.60 4.61 -5.19 -0.02 4.58 16 11 C -0.55 -12.63 7.31 -34.44 -0.25 -12.88 16 12 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 13 C 0.07 1.58 5.06 -17.82 -0.09 1.49 16 14 N -0.88 -21.45 13.29 55.43 0.74 -20.71 16 15 Si 0.90 18.64 29.54 -169.99 -5.02 13.62 16 16 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 18 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 19 C 0.13 2.24 5.30 -4.04 -0.02 2.22 16 20 C 0.04 0.67 5.28 -3.83 -0.02 0.65 16 21 N -0.53 -7.25 4.73 -234.30 -1.11 -8.36 16 22 C 0.02 0.19 5.44 -3.71 -0.02 0.17 16 23 C 0.06 0.71 7.01 37.21 0.26 0.97 16 24 O -0.39 -4.83 10.83 -35.23 -0.38 -5.21 16 25 C 0.06 0.69 7.01 37.21 0.26 0.95 16 26 C 0.02 0.22 5.64 -3.71 -0.02 0.19 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.11 1.94 5.38 -51.93 -0.28 1.66 16 30 H 0.26 5.56 2.86 -52.49 -0.15 5.41 16 31 H 0.06 1.23 4.49 -51.93 -0.23 1.00 16 32 H 0.04 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 34 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 35 H 0.07 1.24 5.90 -51.93 -0.31 0.94 16 36 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 37 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.15 6.38 -51.93 -0.33 0.82 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -25.64 369.15 -9.62 -35.26 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.33 Total: 7.06 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -0.56 Total: 3.60 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.42 Total: -49.89 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.31 Total: -16.76 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -2.55 Total: 1.54 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -25.64 -9.62 -35.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179682025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.192 kcal (2) G-P(sol) polarization free energy of solvation -25.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds