Wall clock time and date at job start Tue Mar 31 2020 22:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29516 * 121.52951 * 2 1 4 4 S 1.69487 * 107.83847 * 180.23335 * 3 2 1 5 5 C 1.72018 * 96.02868 * 359.72203 * 4 3 2 6 6 C 1.37902 * 105.36343 * 359.97438 * 5 4 3 7 7 C 1.47340 * 123.08609 * 179.97438 * 6 5 4 8 8 O 1.21608 * 120.00318 * 194.33055 * 7 6 5 9 9 N 1.34776 * 119.99706 * 14.33257 * 7 6 5 10 10 C 1.46499 * 120.00245 * 6.85133 * 9 7 6 11 11 C 1.50703 * 109.47074 * 262.10058 * 10 9 7 12 12 H 1.07998 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99732 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00137 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99859 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46955 * 60.00100 * 15 13 11 17 17 H 1.48499 * 109.46977 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47027 * 300.00141 * 15 13 11 19 19 C 1.46507 * 120.00073 * 186.85745 * 9 7 6 20 20 C 1.52996 * 109.46872 * 269.99812 * 19 9 7 21 21 N 1.46897 * 109.47218 * 179.97438 * 20 19 9 22 22 C 1.47016 * 110.99642 * 293.62940 * 21 20 19 23 23 C 1.53104 * 109.25568 * 177.60693 * 22 21 20 24 24 O 1.43008 * 109.25593 * 56.85171 * 23 22 21 25 25 C 1.43020 * 113.74079 * 301.32807 * 24 23 22 26 26 C 1.47016 * 111.00033 * 170.00145 * 21 20 19 27 27 H 1.08997 * 109.47448 * 270.27377 * 1 2 3 28 28 H 1.08999 * 109.46961 * 30.27383 * 1 2 3 29 29 H 1.08998 * 109.46896 * 150.27346 * 1 2 3 30 30 H 1.07994 * 127.31917 * 180.02562 * 5 4 3 31 31 H 1.09001 * 109.47101 * 22.09929 * 10 9 7 32 32 H 1.08997 * 109.47628 * 142.10296 * 10 9 7 33 33 H 0.96998 * 119.99853 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.47153 * 149.99402 * 19 9 7 35 35 H 1.09002 * 109.47012 * 29.99151 * 19 9 7 36 36 H 1.09007 * 109.47294 * 59.99584 * 20 19 9 37 37 H 1.09003 * 109.47393 * 299.99902 * 20 19 9 38 38 H 1.08997 * 109.51122 * 297.54059 * 22 21 20 39 39 H 1.09003 * 109.50553 * 57.67627 * 22 21 20 40 40 H 1.09001 * 109.50439 * 296.91906 * 23 22 21 41 41 H 1.09000 * 109.53827 * 176.80848 * 23 22 21 42 42 H 1.09002 * 109.50375 * 298.73616 * 25 24 23 43 43 H 1.09005 * 109.53981 * 178.62890 * 25 24 23 44 44 H 1.09000 * 109.50320 * 302.32421 * 26 21 20 45 45 H 1.08995 * 109.50999 * 62.41179 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8311 0.7028 -0.0066 5 6 3.6017 -1.0020 -0.0011 6 6 2.2352 -1.1868 0.0063 7 6 1.6035 -2.5179 0.0123 8 8 0.4197 -2.6305 -0.2421 9 7 2.3379 -3.6109 0.2998 10 6 3.7236 -3.4643 0.7519 11 6 4.6564 -3.6627 -0.4149 12 1 4.2570 -3.8762 -1.3954 13 6 6.0198 -3.5706 -0.2310 14 7 6.5062 -3.3101 0.9628 15 14 7.1762 -3.8173 -1.6772 16 1 6.8857 -2.8026 -2.7218 17 1 8.5808 -3.6685 -1.2188 18 1 6.9812 -5.1774 -2.2405 19 6 1.7504 -4.9457 0.1599 20 6 1.0933 -5.3545 1.4797 21 7 0.5037 -6.6926 1.3394 22 6 -0.6173 -6.6772 0.3884 23 6 -1.1624 -8.0989 0.2274 24 8 -1.5464 -8.6047 1.5087 25 6 -0.4785 -8.6343 2.4597 26 6 0.0734 -7.2181 2.6433 27 1 -0.3634 0.0049 1.0276 28 1 -0.3633 0.8875 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 4.3656 -1.7654 -0.0023 31 1 3.8670 -2.4663 1.1661 32 1 3.9366 -4.2097 1.5181 33 1 7.4653 -3.2449 1.0921 34 1 2.5318 -5.6618 -0.0941 35 1 0.9998 -4.9314 -0.6304 36 1 0.3118 -4.6383 1.7338 37 1 1.8438 -5.3688 2.2702 38 1 -1.4056 -6.0257 0.7654 39 1 -0.2705 -6.3089 -0.5771 40 1 -0.3902 -8.7385 -0.1999 41 1 -2.0295 -8.0842 -0.4329 42 1 0.3135 -9.2896 2.0972 43 1 -0.8506 -9.0066 3.4142 44 1 0.9245 -7.2446 3.3238 45 1 -0.7033 -6.5749 3.0567 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179682025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:02 Heat of formation + Delta-G solvation = -26.404963 kcal Electronic energy + Delta-G solvation = -28091.542160 eV Core-core repulsion = 24236.240240 eV Total energy + Delta-G solvation = -3855.301920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58696 -40.50715 -39.13534 -37.46541 -36.69560 -34.68677 -33.00664 -32.15513 -30.75411 -30.43384 -29.38190 -27.31753 -25.49346 -25.01056 -24.48199 -23.49588 -21.49325 -21.29949 -20.34222 -18.76502 -18.55277 -17.75594 -17.56031 -17.10393 -16.73856 -16.40161 -16.22810 -16.17732 -16.02128 -15.91568 -15.57647 -15.15080 -14.83051 -14.47414 -14.35369 -14.22694 -14.15509 -13.49984 -13.44462 -13.28949 -13.10259 -12.93617 -12.78920 -12.56064 -12.52402 -12.32132 -12.23568 -11.93252 -11.79497 -11.74099 -11.63173 -11.46872 -10.79219 -10.72777 -10.69115 -10.37639 -9.77501 -9.54614 -9.40242 -8.28777 -6.45039 -0.44214 0.48474 0.81270 0.84490 1.43621 1.47149 1.52770 2.07064 2.23343 2.40110 2.82787 2.98891 3.00363 3.68181 3.72124 3.84195 3.96055 4.00416 4.14203 4.17627 4.20438 4.33160 4.40370 4.41928 4.47993 4.59314 4.67714 4.68714 4.73259 4.76680 4.82442 4.86608 4.89494 4.97191 4.98170 5.03233 5.15107 5.23294 5.57847 5.67315 5.68914 5.89629 5.92726 5.93476 6.17396 6.47019 6.71604 7.17837 7.29150 8.73945 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.004017 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.259186 B = 6969.449767 C = 9146.419057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.160 3.840 3 N -0.501 5.501 4 S 0.271 5.729 5 C -0.157 4.157 6 C -0.252 4.252 7 C 0.584 3.416 8 O -0.570 6.570 9 N -0.587 5.587 10 C 0.229 3.771 11 C -0.551 4.551 12 H 0.060 0.940 13 C 0.036 3.964 14 N -0.903 5.903 15 Si 0.946 3.054 16 H -0.269 1.269 17 H -0.280 1.280 18 H -0.272 1.272 19 C 0.133 3.867 20 C 0.059 3.941 21 N -0.537 5.537 22 C 0.016 3.984 23 C 0.067 3.933 24 O -0.403 6.403 25 C 0.066 3.934 26 C 0.016 3.984 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.242 0.758 31 H 0.049 0.951 32 H 0.024 0.976 33 H 0.274 0.726 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.115 0.885 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.094 0.906 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 -4.292 1.162 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.018 4.018 3 N -0.321 5.321 4 S 0.427 5.573 5 C -0.305 4.305 6 C -0.272 4.272 7 C 0.371 3.629 8 O -0.453 6.453 9 N -0.316 5.316 10 C 0.108 3.892 11 C -0.589 4.589 12 H 0.078 0.922 13 C -0.168 4.168 14 N -0.540 5.540 15 Si 0.771 3.229 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.197 1.197 19 C 0.010 3.990 20 C -0.070 4.070 21 N -0.263 5.263 22 C -0.112 4.112 23 C -0.010 4.010 24 O -0.322 6.322 25 C -0.011 4.011 26 C -0.112 4.112 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.121 0.879 30 H 0.257 0.743 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.133 0.867 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.113 0.887 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.146 -2.632 1.010 8.620 hybrid contribution 0.019 -0.960 -0.229 0.987 sum -8.127 -3.593 0.782 8.920 Atomic orbital electron populations 1.20920 0.84546 1.05401 1.04369 1.21680 1.00168 0.86639 0.93350 1.76318 1.01145 1.26478 1.28190 1.83748 1.09930 0.97329 1.66328 1.29963 1.01924 1.04826 0.93743 1.20407 0.92723 0.96038 1.17986 1.17449 0.85304 0.83627 0.76480 1.90562 1.15383 1.86407 1.52981 1.47939 1.14321 1.05266 1.64113 1.19873 0.76165 0.98373 0.94836 1.21536 0.91354 1.50189 0.95808 0.92160 1.25573 0.99212 0.93940 0.98050 1.69978 1.14639 1.46773 1.22603 0.85764 0.78070 0.79192 0.79852 1.19429 1.20477 1.19718 1.21238 0.97984 0.82800 0.96977 1.22242 0.97801 0.88601 0.98381 1.62166 1.30477 1.23095 1.10543 1.22871 0.92023 0.98648 0.97706 1.22757 1.01069 0.91973 0.85168 1.87939 1.36586 1.84921 1.22777 1.22781 0.90004 0.94488 0.93799 1.22865 1.00229 0.97275 0.90788 0.89486 0.89537 0.87851 0.74304 0.93360 0.95749 0.91624 0.89788 0.90862 0.95724 0.90907 0.94995 0.89378 0.91679 0.86688 0.91756 0.86358 0.88729 0.94707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.76 9.72 71.24 0.69 -2.07 16 2 C 0.16 5.80 6.75 43.14 0.29 6.10 16 3 N -0.50 -18.06 11.97 -51.09 -0.61 -18.67 16 4 S 0.27 9.41 23.69 -56.49 -1.34 8.07 16 5 C -0.16 -6.25 8.79 67.74 0.60 -5.66 16 6 C -0.25 -9.95 5.65 -20.72 -0.12 -10.07 16 7 C 0.58 23.71 7.55 86.64 0.65 24.36 16 8 O -0.57 -23.38 13.49 -4.06 -0.05 -23.44 16 9 N -0.59 -23.38 2.46 -830.14 -2.05 -25.42 16 10 C 0.23 10.01 4.61 85.63 0.39 10.40 16 11 C -0.55 -25.55 7.31 25.60 0.19 -25.37 16 12 H 0.06 2.87 7.81 -2.91 -0.02 2.84 16 13 C 0.04 1.68 5.06 84.66 0.43 2.11 16 14 N -0.90 -44.26 13.29 21.45 0.28 -43.98 16 15 Si 0.95 37.88 29.54 68.60 2.03 39.90 16 16 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 17 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 19 C 0.13 4.64 5.30 86.38 0.46 5.10 16 20 C 0.06 1.83 5.28 86.30 0.46 2.29 16 21 N -0.54 -14.39 4.73 -895.20 -4.23 -18.62 16 22 C 0.02 0.39 5.44 86.32 0.47 0.86 16 23 C 0.07 1.39 7.01 72.02 0.50 1.89 16 24 O -0.40 -9.32 10.83 -148.98 -1.61 -10.93 16 25 C 0.07 1.28 7.01 72.01 0.50 1.78 16 26 C 0.02 0.37 5.64 86.31 0.49 0.86 16 27 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.09 2.26 8.14 -2.39 -0.02 2.25 16 29 H 0.10 3.41 5.38 -2.39 -0.01 3.39 16 30 H 0.24 10.55 2.86 -2.91 -0.01 10.54 16 31 H 0.05 2.22 4.49 -2.39 -0.01 2.21 16 32 H 0.02 1.14 8.13 -2.39 -0.02 1.12 16 33 H 0.27 12.85 8.31 -92.71 -0.77 12.08 16 34 H 0.08 3.02 8.07 -2.39 -0.02 3.00 16 35 H 0.07 2.54 5.90 -2.39 -0.01 2.52 16 36 H 0.02 0.83 8.12 -2.38 -0.02 0.81 16 37 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 38 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 2.21 6.38 -2.39 -0.02 2.19 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.09 1.96 8.09 -2.39 -0.02 1.94 16 45 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -53.06 369.15 -0.56 -53.62 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 1.01 Total: 26.89 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 6.01 Total: 12.58 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -6.60 Total: -106.70 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -1.67 Total: -34.37 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: 9.41 SS G_CDS: -1.34 Total: 8.07 kcal Total: -53.06 -0.56 -53.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179682025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.220 kcal (2) G-P(sol) polarization free energy of solvation -53.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds