Wall clock time and date at job start Tue Mar 31 2020 22:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35232 * 126.06551 * 2 1 4 4 C 1.40409 * 107.86793 * 179.97438 * 3 2 1 5 5 N 1.40154 * 125.97932 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99653 * 359.97438 * 5 4 3 7 7 O 1.21288 * 120.00356 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99873 * 179.97438 * 6 5 4 9 9 H 1.09007 * 110.06795 * 299.92257 * 8 6 5 10 10 C 1.53480 * 110.09122 * 61.45399 * 8 6 5 11 11 C 1.50944 * 105.33925 * 119.20899 * 10 8 6 12 12 O 1.21251 * 125.95006 * 179.97438 * 11 10 8 13 13 C 1.47226 * 108.10267 * 0.02562 * 11 10 8 14 14 C 1.40385 * 130.01653 * 180.28393 * 13 11 10 15 15 C 1.37689 * 120.06611 * 180.15984 * 14 13 11 16 16 C 1.38425 * 120.16517 * 359.53138 * 15 14 13 17 17 C 1.38276 * 120.19364 * 0.23283 * 16 15 14 18 18 C 1.38212 * 120.33246 * 0.02562 * 17 16 15 19 19 N 1.31225 * 108.04884 * 0.22406 * 4 3 2 20 20 N 1.34965 * 126.07091 * 179.97438 * 2 1 3 21 21 C 1.46502 * 125.97534 * 0.02562 * 20 2 1 22 22 C 1.50699 * 109.47300 * 89.99582 * 21 20 2 23 23 H 1.07999 * 119.99874 * 0.02562 * 22 21 20 24 24 C 1.37877 * 119.99947 * 179.97438 * 22 21 20 25 25 N 1.31506 * 120.00126 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99830 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46975 * 60.00500 * 26 24 22 28 28 H 1.48503 * 109.47086 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47634 * 300.00440 * 26 24 22 30 30 H 1.09005 * 109.47412 * 90.02432 * 1 2 3 31 31 H 1.08996 * 109.46919 * 210.02182 * 1 2 3 32 32 H 1.08998 * 109.47464 * 330.02406 * 1 2 3 33 33 H 1.08003 * 126.07350 * 359.97438 * 3 2 1 34 34 H 0.97003 * 120.00495 * 179.97438 * 5 4 3 35 35 H 1.09006 * 110.26916 * 0.24492 * 10 8 6 36 36 H 1.09003 * 110.35343 * 238.22055 * 10 8 6 37 37 H 1.07996 * 119.96616 * 359.97438 * 14 13 11 38 38 H 1.07997 * 119.91781 * 179.74335 * 15 14 13 39 39 H 1.07994 * 119.90653 * 180.21484 * 16 15 14 40 40 H 1.07999 * 119.83380 * 180.02562 * 17 16 15 41 41 H 1.09002 * 109.47287 * 209.99984 * 21 20 2 42 42 H 1.09004 * 109.46783 * 330.00046 * 21 20 2 43 43 H 0.96997 * 120.00212 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0931 0.0000 4 6 3.6370 0.6547 0.0006 5 7 4.7734 1.4750 0.0003 6 6 4.6366 2.8158 -0.0012 7 8 3.5301 3.3125 -0.0018 8 6 5.8585 3.6979 -0.0009 9 1 6.4599 3.5036 0.8872 10 6 6.6903 3.4467 -1.2661 11 6 6.7265 4.7709 -1.9896 12 8 7.2891 4.9928 -3.0405 13 6 5.9607 5.7467 -1.1964 14 6 5.6966 7.1030 -1.4443 15 6 4.9486 7.8348 -0.5495 16 6 4.4462 7.2343 0.5920 17 6 4.6967 5.8977 0.8424 18 6 5.4504 5.1510 -0.0433 19 7 3.6336 -0.6576 -0.0039 20 7 2.3017 -1.0909 0.0005 21 6 1.8501 -2.4846 0.0006 22 6 1.6956 -2.9627 -1.4202 23 1 1.9126 -2.2954 -2.2411 24 6 1.2784 -4.2525 -1.6720 25 7 1.0147 -5.0653 -0.6724 26 14 1.0876 -4.8454 -3.4331 27 1 2.3941 -4.7481 -4.1324 28 1 0.6309 -6.2584 -3.4330 29 1 0.0870 -4.0012 -4.1341 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5134 33 1 1.9719 2.1211 -0.0004 34 1 5.6584 1.0777 0.0011 35 1 6.2126 2.6895 -1.8880 36 1 7.7000 3.1340 -1.0000 37 1 6.0832 7.5736 -2.3362 38 1 4.7504 8.8792 -0.7405 39 1 3.8570 7.8114 1.2892 40 1 4.3016 5.4350 1.7347 41 1 2.5845 -3.1045 0.5148 42 1 0.8912 -2.5557 0.5141 43 1 0.7207 -5.9725 -0.8495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277284515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:08 Heat of formation + Delta-G solvation = 36.499792 kcal Electronic energy + Delta-G solvation = -27979.598632 eV Core-core repulsion = 23991.580516 eV Total energy + Delta-G solvation = -3988.018116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43267 -40.58513 -39.15903 -38.35850 -35.29299 -34.96866 -33.40481 -31.55164 -31.37221 -30.90419 -29.61548 -27.41587 -26.48866 -26.32953 -23.47787 -23.27273 -22.41423 -20.90562 -20.41028 -19.85171 -19.22986 -17.20274 -17.05429 -16.72173 -16.51725 -16.02835 -15.81107 -15.56209 -15.27332 -15.05524 -14.47851 -14.28008 -14.22992 -14.14993 -13.87513 -13.38958 -13.06923 -13.01819 -12.74180 -12.51270 -12.34545 -12.21603 -12.09688 -12.02413 -11.69148 -11.44215 -11.38055 -11.14076 -10.83823 -10.52777 -10.27668 -10.11141 -9.98620 -9.68970 -9.59111 -9.26664 -9.15088 -8.66701 -8.01164 -7.53407 -6.28418 -4.36194 0.29699 0.99809 2.08200 2.15361 2.62247 2.82782 3.21677 3.25641 3.29702 3.42454 3.49077 3.61898 3.81190 3.89810 4.19816 4.27820 4.48993 4.56710 4.67295 4.68441 4.81984 5.01889 5.05515 5.16012 5.17384 5.34390 5.37677 5.45030 5.64528 5.65668 5.85766 5.96989 6.04730 6.06764 6.10769 6.16401 6.38705 6.45882 6.52136 6.64135 6.88046 7.01019 7.13655 7.35208 7.54869 7.63799 7.85305 7.99052 8.09891 8.58282 8.70953 9.30309 10.78920 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.002428 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.078358 B =11528.542792 C =12236.161112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.290 4.290 4 C 0.261 3.739 5 N -0.628 5.628 6 C 0.525 3.475 7 O -0.501 6.501 8 C -0.067 4.067 9 H 0.129 0.871 10 C -0.170 4.170 11 C 0.412 3.588 12 O -0.439 6.439 13 C -0.186 4.186 14 C -0.054 4.054 15 C -0.132 4.132 16 C -0.083 4.083 17 C -0.092 4.092 18 C -0.026 4.026 19 N -0.318 5.318 20 N -0.315 5.315 21 C 0.259 3.741 22 C -0.537 4.537 23 H 0.064 0.936 24 C 0.066 3.934 25 N -0.892 5.892 26 Si 0.906 3.094 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.159 0.841 34 H 0.411 0.589 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.596 22.251 4.891 24.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.039 4.039 3 C -0.321 4.321 4 C 0.009 3.991 5 N -0.276 5.276 6 C 0.310 3.690 7 O -0.373 6.373 8 C -0.088 4.088 9 H 0.146 0.854 10 C -0.207 4.207 11 C 0.289 3.711 12 O -0.314 6.314 13 C -0.187 4.187 14 C -0.072 4.072 15 C -0.149 4.149 16 C -0.101 4.101 17 C -0.110 4.110 18 C -0.027 4.027 19 N -0.149 5.149 20 N -0.098 5.098 21 C 0.141 3.859 22 C -0.576 4.576 23 H 0.082 0.918 24 C -0.137 4.137 25 N -0.529 5.529 26 Si 0.733 3.267 27 H -0.200 1.200 28 H -0.209 1.209 29 H -0.199 1.199 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.176 0.824 34 H 0.247 0.753 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.715 21.351 4.388 23.475 hybrid contribution -0.154 -0.125 -0.851 0.874 sum 8.560 21.226 3.537 23.159 Atomic orbital electron populations 1.20340 0.87848 1.02853 1.03232 1.21071 0.94948 0.87149 1.00751 1.21226 0.89697 0.99783 1.21406 1.18960 0.87108 0.89606 1.03474 1.42415 1.07734 1.04860 1.72568 1.20121 0.90630 0.81422 0.76842 1.90690 1.26221 1.73687 1.46724 1.20526 0.95462 0.91663 1.01170 0.85362 1.22388 1.03117 0.98968 0.96245 1.22327 0.75734 0.89188 0.83802 1.90562 1.37367 1.83165 1.20288 1.21027 1.04086 0.95599 0.98001 1.21111 0.95472 0.91970 0.98667 1.21105 0.98739 1.00361 0.94743 1.21349 0.97387 0.94464 0.96899 1.20608 0.97202 0.93555 0.99625 1.19925 0.95528 0.93046 0.94161 1.77263 1.00003 1.08427 1.29171 1.49014 1.00941 1.07848 1.51963 1.19701 0.95994 0.71232 0.98971 1.21270 1.47019 0.97971 0.91319 0.91821 1.24918 0.94616 0.96045 0.98132 1.69901 1.44772 1.07169 1.31101 0.86414 0.78844 0.77704 0.83726 1.19970 1.20925 1.19914 0.90385 0.90812 0.90804 0.82358 0.75328 0.86504 0.85836 0.85316 0.85152 0.85044 0.85165 0.92973 0.92756 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.11 36.01 0.36 -1.05 16 2 C 0.09 1.89 6.92 -82.28 -0.57 1.32 16 3 C -0.29 -5.72 9.52 -39.84 -0.38 -6.10 16 4 C 0.26 5.02 8.11 -154.39 -1.25 3.76 16 5 N -0.63 -8.70 5.30 -11.13 -0.06 -8.76 16 6 C 0.53 6.69 6.90 -10.98 -0.08 6.61 16 7 O -0.50 -8.05 12.76 5.55 0.07 -7.98 16 8 C -0.07 -0.57 3.33 -92.53 -0.31 -0.88 16 9 H 0.13 0.67 8.14 -51.92 -0.42 0.25 16 10 C -0.17 -1.36 6.41 -27.52 -0.18 -1.54 16 11 C 0.41 4.49 7.77 -30.54 -0.24 4.26 16 12 O -0.44 -6.05 18.02 5.58 0.10 -5.95 16 13 C -0.19 -1.94 6.11 -104.98 -0.64 -2.58 16 14 C -0.05 -0.50 10.11 -38.97 -0.39 -0.89 16 15 C -0.13 -1.00 10.02 -39.71 -0.40 -1.40 16 16 C -0.08 -0.64 10.05 -39.50 -0.40 -1.03 16 17 C -0.09 -0.84 9.43 -39.58 -0.37 -1.21 16 18 C -0.03 -0.25 5.04 -104.03 -0.52 -0.78 16 19 N -0.32 -7.07 12.59 31.44 0.40 -6.67 16 20 N -0.32 -7.30 3.59 -58.33 -0.21 -7.50 16 21 C 0.26 6.52 5.99 -5.19 -0.03 6.48 16 22 C -0.54 -14.64 9.39 -34.44 -0.32 -14.96 16 23 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 24 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 25 N -0.89 -24.80 13.29 55.43 0.74 -24.06 16 26 Si 0.91 20.98 29.54 -169.99 -5.02 15.95 16 27 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 29 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.24 7.07 -51.93 -0.37 0.87 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.16 3.03 5.92 -52.48 -0.31 2.72 16 34 H 0.41 4.35 8.79 -40.82 -0.36 4.00 16 35 H 0.12 1.02 7.61 -51.93 -0.40 0.63 16 36 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.05 1.35 7.04 -51.93 -0.37 0.99 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -34.21 372.56 -9.33 -43.54 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.15 Total: 4.10 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -5.81 Total: -8.28 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.86 Total: -47.00 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.17 Total: -13.92 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.21 -9.33 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277284515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.042 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds