Wall clock time and date at job start Tue Mar 31 2020 22:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35232 * 126.06551 * 2 1 4 4 C 1.40409 * 107.86793 * 179.97438 * 3 2 1 5 5 N 1.40154 * 125.97932 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99653 * 359.97438 * 5 4 3 7 7 O 1.21288 * 120.00356 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99873 * 179.97438 * 6 5 4 9 9 H 1.09007 * 110.06795 * 299.92257 * 8 6 5 10 10 C 1.53480 * 110.09122 * 61.45399 * 8 6 5 11 11 C 1.50944 * 105.33925 * 119.20899 * 10 8 6 12 12 O 1.21251 * 125.95006 * 179.97438 * 11 10 8 13 13 C 1.47226 * 108.10267 * 0.02562 * 11 10 8 14 14 C 1.40385 * 130.01653 * 180.28393 * 13 11 10 15 15 C 1.37689 * 120.06611 * 180.15984 * 14 13 11 16 16 C 1.38425 * 120.16517 * 359.53138 * 15 14 13 17 17 C 1.38276 * 120.19364 * 0.23283 * 16 15 14 18 18 C 1.38212 * 120.33246 * 0.02562 * 17 16 15 19 19 N 1.31225 * 108.04884 * 0.22406 * 4 3 2 20 20 N 1.34965 * 126.07091 * 179.97438 * 2 1 3 21 21 C 1.46502 * 125.97534 * 0.02562 * 20 2 1 22 22 C 1.50699 * 109.47300 * 89.99582 * 21 20 2 23 23 H 1.07999 * 119.99874 * 0.02562 * 22 21 20 24 24 C 1.37877 * 119.99947 * 179.97438 * 22 21 20 25 25 N 1.31506 * 120.00126 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99830 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46975 * 60.00500 * 26 24 22 28 28 H 1.48503 * 109.47086 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47634 * 300.00440 * 26 24 22 30 30 H 1.09005 * 109.47412 * 90.02432 * 1 2 3 31 31 H 1.08996 * 109.46919 * 210.02182 * 1 2 3 32 32 H 1.08998 * 109.47464 * 330.02406 * 1 2 3 33 33 H 1.08003 * 126.07350 * 359.97438 * 3 2 1 34 34 H 0.97003 * 120.00495 * 179.97438 * 5 4 3 35 35 H 1.09006 * 110.26916 * 0.24492 * 10 8 6 36 36 H 1.09003 * 110.35343 * 238.22055 * 10 8 6 37 37 H 1.07996 * 119.96616 * 359.97438 * 14 13 11 38 38 H 1.07997 * 119.91781 * 179.74335 * 15 14 13 39 39 H 1.07994 * 119.90653 * 180.21484 * 16 15 14 40 40 H 1.07999 * 119.83380 * 180.02562 * 17 16 15 41 41 H 1.09002 * 109.47287 * 209.99984 * 21 20 2 42 42 H 1.09004 * 109.46783 * 330.00046 * 21 20 2 43 43 H 0.96997 * 120.00212 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3031 1.0931 0.0000 4 6 3.6370 0.6547 0.0006 5 7 4.7734 1.4750 0.0003 6 6 4.6366 2.8158 -0.0012 7 8 3.5301 3.3125 -0.0018 8 6 5.8585 3.6979 -0.0009 9 1 6.4599 3.5036 0.8872 10 6 6.6903 3.4467 -1.2661 11 6 6.7265 4.7709 -1.9896 12 8 7.2891 4.9928 -3.0405 13 6 5.9607 5.7467 -1.1964 14 6 5.6966 7.1030 -1.4443 15 6 4.9486 7.8348 -0.5495 16 6 4.4462 7.2343 0.5920 17 6 4.6967 5.8977 0.8424 18 6 5.4504 5.1510 -0.0433 19 7 3.6336 -0.6576 -0.0039 20 7 2.3017 -1.0909 0.0005 21 6 1.8501 -2.4846 0.0006 22 6 1.6956 -2.9627 -1.4202 23 1 1.9126 -2.2954 -2.2411 24 6 1.2784 -4.2525 -1.6720 25 7 1.0147 -5.0653 -0.6724 26 14 1.0876 -4.8454 -3.4331 27 1 2.3941 -4.7481 -4.1324 28 1 0.6309 -6.2584 -3.4330 29 1 0.0870 -4.0012 -4.1341 30 1 -0.3634 -0.0004 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5134 33 1 1.9719 2.1211 -0.0004 34 1 5.6584 1.0777 0.0011 35 1 6.2126 2.6895 -1.8880 36 1 7.7000 3.1340 -1.0000 37 1 6.0832 7.5736 -2.3362 38 1 4.7504 8.8792 -0.7405 39 1 3.8570 7.8114 1.2892 40 1 4.3016 5.4350 1.7347 41 1 2.5845 -3.1045 0.5148 42 1 0.8912 -2.5557 0.5141 43 1 0.7207 -5.9725 -0.8495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277284515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:08 Heat of formation + Delta-G solvation = 16.220785 kcal Electronic energy + Delta-G solvation = -27980.477996 eV Core-core repulsion = 23991.580516 eV Total energy + Delta-G solvation = -3988.897480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48548 -41.86470 -40.26733 -39.14121 -36.36302 -36.08099 -35.27516 -33.04972 -32.64048 -32.03843 -30.34827 -28.79068 -27.89899 -27.69929 -25.09980 -24.00351 -23.59133 -21.93854 -21.34684 -21.09129 -20.55692 -18.80944 -18.22560 -17.89241 -17.64239 -17.20743 -16.80170 -16.67998 -16.34261 -16.21556 -16.12124 -15.63907 -15.20568 -14.95667 -14.86779 -14.66855 -14.31041 -14.07481 -13.81039 -13.76271 -13.66791 -13.53515 -13.38346 -13.12540 -12.87600 -12.78811 -12.67120 -12.62691 -12.23815 -12.12678 -12.00480 -11.54645 -11.36633 -10.98421 -10.78677 -10.73351 -9.95389 -9.82364 -9.58936 -9.14958 -8.33333 -6.50787 -0.42660 0.32960 0.88270 1.29922 1.34203 1.38232 1.39476 1.40807 1.48987 2.17414 2.24913 2.37516 2.77667 2.81601 2.96629 3.17750 3.49629 3.57992 3.89262 3.92682 4.00214 4.13907 4.16729 4.20820 4.40362 4.43796 4.52476 4.62923 4.70807 4.71558 4.77631 4.83583 4.88861 4.98042 4.99915 5.02191 5.13542 5.25041 5.32671 5.41074 5.47873 5.53058 5.80737 5.90695 5.93613 6.25091 6.25537 6.34589 6.61188 6.95116 7.09560 7.20141 8.72415 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.002428 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.078358 B =11528.542792 C =12236.161112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.086 3.914 3 C -0.298 4.298 4 C 0.273 3.727 5 N -0.619 5.619 6 C 0.528 3.472 7 O -0.533 6.533 8 C -0.052 4.052 9 H 0.171 0.829 10 C -0.163 4.163 11 C 0.408 3.592 12 O -0.480 6.480 13 C -0.211 4.211 14 C -0.068 4.068 15 C -0.130 4.130 16 C -0.080 4.080 17 C -0.106 4.106 18 C -0.036 4.036 19 N -0.355 5.355 20 N -0.343 5.343 21 C 0.276 3.724 22 C -0.554 4.554 23 H 0.049 0.951 24 C 0.024 3.976 25 N -0.917 5.917 26 Si 0.968 3.032 27 H -0.276 1.276 28 H -0.273 1.273 29 H -0.266 1.266 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.167 0.833 34 H 0.428 0.572 35 H 0.111 0.889 36 H 0.162 0.838 37 H 0.132 0.868 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.136 0.864 41 H 0.025 0.975 42 H 0.052 0.948 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.810 23.815 5.128 25.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.044 4.044 3 C -0.329 4.329 4 C 0.019 3.981 5 N -0.269 5.269 6 C 0.315 3.685 7 O -0.407 6.407 8 C -0.073 4.073 9 H 0.188 0.812 10 C -0.200 4.200 11 C 0.289 3.711 12 O -0.357 6.357 13 C -0.212 4.212 14 C -0.087 4.087 15 C -0.147 4.147 16 C -0.098 4.098 17 C -0.124 4.124 18 C -0.037 4.037 19 N -0.186 5.186 20 N -0.125 5.125 21 C 0.157 3.843 22 C -0.592 4.592 23 H 0.067 0.933 24 C -0.177 4.177 25 N -0.555 5.555 26 Si 0.792 3.208 27 H -0.201 1.201 28 H -0.197 1.197 29 H -0.191 1.191 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.185 0.815 34 H 0.266 0.734 35 H 0.129 0.871 36 H 0.180 0.820 37 H 0.150 0.850 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.154 0.846 41 H 0.043 0.957 42 H 0.070 0.930 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.946 22.934 4.646 25.052 hybrid contribution -0.221 -0.419 -0.860 0.982 sum 8.726 22.515 3.786 24.442 Atomic orbital electron populations 1.20467 0.85542 1.04230 1.03833 1.21736 0.96607 0.86567 0.99521 1.21424 0.90008 0.99830 1.21602 1.19309 0.88804 0.89185 1.00822 1.42557 1.07069 1.04899 1.72424 1.20909 0.91608 0.80897 0.75047 1.90666 1.28028 1.74081 1.47885 1.20563 0.93662 0.89892 1.03175 0.81177 1.22446 1.05054 0.97160 0.95378 1.22772 0.74643 0.90525 0.83173 1.90543 1.39256 1.84005 1.21937 1.21179 1.05171 0.96319 0.98502 1.21369 0.95945 0.91983 0.99359 1.21444 0.97603 1.01548 0.94125 1.21731 0.96710 0.94181 0.97142 1.20852 0.97297 0.94335 0.99873 1.20081 0.95933 0.93556 0.94152 1.77184 0.99948 1.10040 1.31411 1.48784 1.01843 1.07500 1.54412 1.19232 0.94948 0.72459 0.97680 1.21403 1.47627 0.98339 0.91825 0.93317 1.25698 0.93966 0.95952 1.02081 1.69982 1.44993 1.07567 1.32981 0.85450 0.78726 0.77711 0.78879 1.20112 1.19721 1.19111 0.90031 0.91302 0.87521 0.81532 0.73386 0.87110 0.82045 0.85021 0.82492 0.82367 0.84590 0.95662 0.93034 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.71 10.11 71.24 0.72 -1.99 16 2 C 0.09 3.53 6.92 41.38 0.29 3.82 16 3 C -0.30 -11.61 9.52 22.11 0.21 -11.40 16 4 C 0.27 10.39 8.11 133.32 1.08 11.47 16 5 N -0.62 -16.25 5.30 -307.51 -1.63 -17.88 16 6 C 0.53 12.49 6.90 87.66 0.60 13.09 16 7 O -0.53 -16.41 12.76 -3.06 -0.04 -16.44 16 8 C -0.05 -0.76 3.33 -12.03 -0.04 -0.80 16 9 H 0.17 1.07 8.14 -2.38 -0.02 1.05 16 10 C -0.16 -2.27 6.41 30.09 0.19 -2.08 16 11 C 0.41 8.62 7.77 28.13 0.22 8.84 16 12 O -0.48 -13.33 18.02 -2.94 -0.05 -13.38 16 13 C -0.21 -4.19 6.11 -20.10 -0.12 -4.31 16 14 C -0.07 -1.19 10.11 22.66 0.23 -0.96 16 15 C -0.13 -1.69 10.02 22.18 0.22 -1.46 16 16 C -0.08 -1.02 10.05 22.32 0.22 -0.80 16 17 C -0.11 -1.70 9.43 22.27 0.21 -1.49 16 18 C -0.04 -0.65 5.04 -19.48 -0.10 -0.75 16 19 N -0.36 -16.03 12.59 -54.45 -0.69 -16.72 16 20 N -0.34 -16.24 3.59 -338.44 -1.22 -17.45 16 21 C 0.28 14.38 5.99 85.63 0.51 14.90 16 22 C -0.55 -30.81 9.39 25.60 0.24 -30.57 16 23 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 24 C 0.02 1.32 5.46 84.66 0.46 1.78 16 25 N -0.92 -51.43 13.29 21.45 0.28 -51.14 16 26 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 29 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 30 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 31 H 0.07 2.31 7.07 -2.39 -0.02 2.29 16 32 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 33 H 0.17 6.22 5.92 -2.91 -0.02 6.20 16 34 H 0.43 8.23 8.79 -92.71 -0.81 7.42 16 35 H 0.11 1.76 7.61 -2.38 -0.02 1.74 16 36 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 39 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 40 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 41 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 42 H 0.05 2.66 7.04 -2.39 -0.02 2.65 16 43 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -76.25 372.56 4.09 -72.16 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.25 Total: 18.66 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 5.15 Total: -2.71 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -3.25 Total: -103.19 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.09 Total: -29.82 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.25 4.09 -72.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277284515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.380 kcal (2) G-P(sol) polarization free energy of solvation -76.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds