Wall clock time and date at job start Tue Mar 31 2020 22:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34996 * 127.27756 * 2 1 4 4 C 1.39488 * 111.68650 * 179.97438 * 3 2 1 5 5 C 1.47689 * 122.10122 * 179.97438 * 4 3 2 6 6 O 1.21569 * 120.00480 * 6.33910 * 5 4 3 7 7 N 1.34777 * 119.99803 * 186.34373 * 5 4 3 8 8 C 1.46505 * 119.99956 * 356.24646 * 7 5 4 9 9 C 1.50704 * 109.46896 * 276.92839 * 8 7 5 10 10 H 1.07996 * 120.00115 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99721 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00645 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99687 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46982 * 89.99872 * 13 11 9 15 15 H 1.48499 * 109.46960 * 209.99436 * 13 11 9 16 16 H 1.48498 * 109.47228 * 329.99399 * 13 11 9 17 17 C 1.46500 * 120.00314 * 176.24522 * 7 5 4 18 18 C 1.52993 * 109.47238 * 89.99784 * 17 7 5 19 19 N 1.46900 * 109.47531 * 179.97438 * 18 17 7 20 20 C 1.47016 * 111.00187 * 293.63950 * 19 18 17 21 21 C 1.53096 * 109.25902 * 177.60292 * 20 19 18 22 22 O 1.43014 * 109.25504 * 56.84542 * 21 20 19 23 23 C 1.43013 * 113.74181 * 301.32575 * 22 21 20 24 24 C 1.47005 * 111.00302 * 169.99836 * 19 18 17 25 25 N 1.30603 * 115.79137 * 0.24619 * 4 3 2 26 26 S 1.56153 * 109.79704 * 359.61445 * 25 4 3 27 27 H 1.08996 * 109.47679 * 89.99784 * 1 2 3 28 28 H 1.08998 * 109.47539 * 210.00233 * 1 2 3 29 29 H 1.09004 * 109.46905 * 330.00012 * 1 2 3 30 30 H 1.08006 * 124.15315 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.47389 * 36.92321 * 8 7 5 32 32 H 1.09003 * 109.47373 * 156.92516 * 8 7 5 33 33 H 0.96995 * 120.00405 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.46557 * 329.99875 * 17 7 5 35 35 H 1.09001 * 109.47098 * 210.00359 * 17 7 5 36 36 H 1.09001 * 109.47018 * 60.00075 * 18 17 7 37 37 H 1.09004 * 109.47288 * 300.00751 * 18 17 7 38 38 H 1.08997 * 109.50531 * 297.53884 * 20 19 18 39 39 H 1.08999 * 109.50535 * 57.66688 * 20 19 18 40 40 H 1.09007 * 109.50602 * 296.91612 * 21 20 19 41 41 H 1.08997 * 109.53916 * 176.80662 * 21 20 19 42 42 H 1.08994 * 109.51014 * 298.73896 * 23 22 21 43 43 H 1.08999 * 109.54322 * 178.62319 * 23 22 21 44 44 H 1.09003 * 109.50769 * 302.33347 * 24 19 18 45 45 H 1.09004 * 109.50843 * 62.41935 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0742 0.0000 4 6 3.6682 0.6993 0.0006 5 6 4.7604 1.6934 0.0001 6 8 4.5057 2.8765 0.1155 7 7 6.0396 1.2890 -0.1282 8 6 6.3537 -0.1409 -0.1847 9 6 6.4273 -0.6946 1.2151 10 1 6.2576 -0.0462 2.0619 11 6 6.7123 -2.0287 1.4145 12 7 6.9195 -2.8183 0.3833 13 14 6.8043 -2.7149 3.1495 14 1 5.4616 -3.1956 3.5635 15 1 7.7671 -3.8450 3.1845 16 1 7.2573 -1.6497 4.0797 17 6 7.1162 2.2791 -0.2114 18 6 7.6265 2.5970 1.1954 19 7 8.7064 3.5894 1.1120 20 6 9.8862 3.0288 0.4375 21 6 10.9622 4.1115 0.3191 22 8 11.2710 4.6139 1.6220 23 6 10.1448 5.1681 2.3073 24 6 9.0605 4.0960 2.4458 25 7 3.8995 -0.5861 -0.0040 26 16 2.5471 -1.3668 0.0008 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.9807 2.0980 0.0004 31 1 5.5748 -0.6624 -0.7411 32 1 7.3129 -0.2830 -0.6825 33 1 7.1196 -3.7570 0.5236 34 1 6.7369 3.1899 -0.6748 35 1 7.9326 1.8785 -0.8123 36 1 8.0056 1.6862 1.6588 37 1 6.8100 2.9975 1.7963 38 1 10.2742 2.1921 1.0183 39 1 9.6066 2.6832 -0.5577 40 1 10.5933 4.9244 -0.3064 41 1 11.8599 3.6858 -0.1292 42 1 9.7522 6.0116 1.7396 43 1 10.4506 5.5063 3.2973 44 1 8.1781 4.5295 2.9166 45 1 9.4346 3.2762 3.0591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277987692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:25 Heat of formation + Delta-G solvation = -14.189832 kcal Electronic energy + Delta-G solvation = -27987.526472 eV Core-core repulsion = 24132.754240 eV Total energy + Delta-G solvation = -3854.772232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.98576 -39.40442 -37.77779 -36.01832 -34.84749 -32.83151 -32.50863 -31.16917 -29.74531 -27.84934 -27.18987 -26.41206 -24.50432 -23.95991 -22.80283 -21.82923 -20.26392 -19.94766 -18.56605 -17.82014 -16.80154 -16.36873 -16.15148 -15.93627 -15.36290 -15.05363 -14.98015 -14.88712 -14.51518 -14.36619 -13.93261 -13.72761 -13.44098 -13.17191 -12.70617 -12.65784 -12.61729 -12.34746 -12.22785 -12.21992 -11.85945 -11.65463 -11.34182 -11.24525 -11.05220 -10.90277 -10.65527 -10.54929 -10.40725 -10.14322 -9.75961 -9.63485 -9.57714 -9.06235 -9.02653 -8.40078 -8.26850 -8.21857 -7.71600 -6.08755 -4.09163 1.20656 1.95484 2.30996 2.50539 3.23054 3.30274 3.33107 3.62037 3.86647 3.94948 4.18230 4.39181 4.92151 4.97211 5.07896 5.08911 5.19584 5.26525 5.27047 5.32990 5.42510 5.54215 5.55129 5.60138 5.63021 5.66669 5.71950 5.85948 5.89025 5.92019 6.01511 6.05508 6.13667 6.27050 6.30181 6.47278 6.72036 6.94245 7.07026 7.15495 7.17839 7.43210 7.65143 7.83337 8.18505 8.24195 8.82449 8.95561 9.51926 10.99287 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011305 B = 0.003867 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.276123 B = 7239.513972 C = 8908.681408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.273 4.273 3 C -0.140 4.140 4 C 0.041 3.959 5 C 0.589 3.411 6 O -0.564 6.564 7 N -0.579 5.579 8 C 0.231 3.769 9 C -0.504 4.504 10 H 0.052 0.948 11 C 0.069 3.931 12 N -0.889 5.889 13 Si 0.883 3.117 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.130 3.870 18 C 0.044 3.956 19 N -0.535 5.535 20 C 0.012 3.988 21 C 0.065 3.935 22 O -0.389 6.389 23 C 0.066 3.934 24 C 0.018 3.982 25 N -0.417 5.417 26 S 0.410 5.590 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.058 0.942 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 7.828 -1.436 8.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.403 4.403 3 C -0.173 4.173 4 C -0.133 4.133 5 C 0.373 3.627 6 O -0.444 6.444 7 N -0.308 5.308 8 C 0.110 3.890 9 C -0.543 4.543 10 H 0.070 0.930 11 C -0.133 4.133 12 N -0.528 5.528 13 Si 0.711 3.289 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.201 1.201 17 C 0.006 3.994 18 C -0.084 4.084 19 N -0.261 5.261 20 C -0.116 4.116 21 C -0.012 4.012 22 O -0.308 6.308 23 C -0.011 4.011 24 C -0.110 4.110 25 N -0.250 5.250 26 S 0.566 5.434 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.178 0.822 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.103 0.897 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.932 6.606 -1.641 7.412 hybrid contribution -0.237 0.518 1.555 1.656 sum -3.169 7.124 -0.086 7.798 Atomic orbital electron populations 1.20086 0.87089 1.02898 1.02446 1.26015 1.02690 1.01049 1.10568 1.21132 0.90635 1.01106 1.04410 1.21000 0.94370 0.89798 1.08089 1.17271 0.82177 0.86210 0.77028 1.90698 1.83909 1.16792 1.52987 1.48169 1.04284 1.10142 1.68240 1.20018 0.97566 0.73010 0.98386 1.21242 1.47185 0.94120 0.91802 0.93000 1.24766 0.95424 0.96688 0.96388 1.69910 1.48133 1.05464 1.29287 0.86735 0.77978 0.78805 0.85359 1.20611 1.21134 1.20146 1.21225 0.89664 0.92575 0.95952 1.22504 0.93333 0.93842 0.98770 1.62182 1.07884 1.37291 1.18713 1.22854 0.91191 0.96760 1.00774 1.22672 0.97951 0.95924 0.84634 1.87951 1.33513 1.79288 1.30033 1.22641 0.86205 0.94933 0.97327 1.22746 0.99266 0.98296 0.90720 1.73792 1.22564 1.10120 1.18483 1.80906 0.89605 1.14430 1.58505 0.90915 0.91245 0.91019 0.82250 0.90488 0.95349 0.92894 0.90245 0.91000 0.92792 0.90650 0.93583 0.89269 0.92388 0.88635 0.92366 0.88767 0.89746 0.93931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.46 36.01 0.38 -0.31 16 2 C -0.27 -4.02 6.58 -35.46 -0.23 -4.25 16 3 C -0.14 -2.40 9.93 -40.27 -0.40 -2.80 16 4 C 0.04 0.84 6.49 -84.06 -0.55 0.29 16 5 C 0.59 12.91 7.59 -12.40 -0.09 12.82 16 6 O -0.56 -12.81 16.29 5.30 0.09 -12.72 16 7 N -0.58 -12.48 2.48 -176.23 -0.44 -12.92 16 8 C 0.23 5.58 4.81 -5.19 -0.02 5.55 16 9 C -0.50 -13.13 8.14 -34.44 -0.28 -13.41 16 10 H 0.05 1.41 7.81 -52.49 -0.41 1.00 16 11 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 12 N -0.89 -24.45 13.29 55.43 0.74 -23.72 16 13 Si 0.88 21.01 29.54 -169.99 -5.02 15.99 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.13 2.42 5.35 -4.05 -0.02 2.39 16 18 C 0.04 0.79 5.28 -3.83 -0.02 0.77 16 19 N -0.53 -8.21 4.73 -234.31 -1.11 -9.32 16 20 C 0.01 0.17 5.44 -3.71 -0.02 0.15 16 21 C 0.07 0.79 7.01 37.21 0.26 1.05 16 22 O -0.39 -5.30 10.83 -35.23 -0.38 -5.68 16 23 C 0.07 0.78 7.01 37.21 0.26 1.05 16 24 C 0.02 0.25 5.64 -3.71 -0.02 0.23 16 25 N -0.42 -8.87 6.43 24.85 0.16 -8.71 16 26 S 0.41 6.88 23.20 -107.50 -2.49 4.39 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.16 2.53 8.00 -52.48 -0.42 2.11 16 31 H 0.08 1.97 5.26 -51.93 -0.27 1.70 16 32 H 0.03 0.72 7.82 -51.93 -0.41 0.31 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.08 1.47 7.48 -51.93 -0.39 1.09 16 35 H 0.07 1.25 6.22 -51.93 -0.32 0.92 16 36 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 37 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 1.19 6.38 -51.93 -0.33 0.86 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 41 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -30.48 378.05 -10.37 -40.85 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.75 Total: 0.85 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.86 Total: 5.29 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.65 Total: -54.66 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.30 Total: -18.41 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 6.88 SS G_CDS: -2.49 Total: 4.39 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.48 -10.37 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277987692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.658 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds