Wall clock time and date at job start Tue Mar 31 2020 22:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34996 * 127.27756 * 2 1 4 4 C 1.39488 * 111.68650 * 179.97438 * 3 2 1 5 5 C 1.47689 * 122.10122 * 179.97438 * 4 3 2 6 6 O 1.21569 * 120.00480 * 6.33910 * 5 4 3 7 7 N 1.34777 * 119.99803 * 186.34373 * 5 4 3 8 8 C 1.46505 * 119.99956 * 356.24646 * 7 5 4 9 9 C 1.50704 * 109.46896 * 276.92839 * 8 7 5 10 10 H 1.07996 * 120.00115 * 359.97438 * 9 8 7 11 11 C 1.37873 * 119.99721 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00645 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99687 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46982 * 89.99872 * 13 11 9 15 15 H 1.48499 * 109.46960 * 209.99436 * 13 11 9 16 16 H 1.48498 * 109.47228 * 329.99399 * 13 11 9 17 17 C 1.46500 * 120.00314 * 176.24522 * 7 5 4 18 18 C 1.52993 * 109.47238 * 89.99784 * 17 7 5 19 19 N 1.46900 * 109.47531 * 179.97438 * 18 17 7 20 20 C 1.47016 * 111.00187 * 293.63950 * 19 18 17 21 21 C 1.53096 * 109.25902 * 177.60292 * 20 19 18 22 22 O 1.43014 * 109.25504 * 56.84542 * 21 20 19 23 23 C 1.43013 * 113.74181 * 301.32575 * 22 21 20 24 24 C 1.47005 * 111.00302 * 169.99836 * 19 18 17 25 25 N 1.30603 * 115.79137 * 0.24619 * 4 3 2 26 26 S 1.56153 * 109.79704 * 359.61445 * 25 4 3 27 27 H 1.08996 * 109.47679 * 89.99784 * 1 2 3 28 28 H 1.08998 * 109.47539 * 210.00233 * 1 2 3 29 29 H 1.09004 * 109.46905 * 330.00012 * 1 2 3 30 30 H 1.08006 * 124.15315 * 0.02562 * 3 2 1 31 31 H 1.09004 * 109.47389 * 36.92321 * 8 7 5 32 32 H 1.09003 * 109.47373 * 156.92516 * 8 7 5 33 33 H 0.96995 * 120.00405 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.46557 * 329.99875 * 17 7 5 35 35 H 1.09001 * 109.47098 * 210.00359 * 17 7 5 36 36 H 1.09001 * 109.47018 * 60.00075 * 18 17 7 37 37 H 1.09004 * 109.47288 * 300.00751 * 18 17 7 38 38 H 1.08997 * 109.50531 * 297.53884 * 20 19 18 39 39 H 1.08999 * 109.50535 * 57.66688 * 20 19 18 40 40 H 1.09007 * 109.50602 * 296.91612 * 21 20 19 41 41 H 1.08997 * 109.53916 * 176.80662 * 21 20 19 42 42 H 1.08994 * 109.51014 * 298.73896 * 23 22 21 43 43 H 1.08999 * 109.54322 * 178.62319 * 23 22 21 44 44 H 1.09003 * 109.50769 * 302.33347 * 24 19 18 45 45 H 1.09004 * 109.50843 * 62.41935 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.0742 0.0000 4 6 3.6682 0.6993 0.0006 5 6 4.7604 1.6934 0.0001 6 8 4.5057 2.8765 0.1155 7 7 6.0396 1.2890 -0.1282 8 6 6.3537 -0.1409 -0.1847 9 6 6.4273 -0.6946 1.2151 10 1 6.2576 -0.0462 2.0619 11 6 6.7123 -2.0287 1.4145 12 7 6.9195 -2.8183 0.3833 13 14 6.8043 -2.7149 3.1495 14 1 5.4616 -3.1956 3.5635 15 1 7.7671 -3.8450 3.1845 16 1 7.2573 -1.6497 4.0797 17 6 7.1162 2.2791 -0.2114 18 6 7.6265 2.5970 1.1954 19 7 8.7064 3.5894 1.1120 20 6 9.8862 3.0288 0.4375 21 6 10.9622 4.1115 0.3191 22 8 11.2710 4.6139 1.6220 23 6 10.1448 5.1681 2.3073 24 6 9.0605 4.0960 2.4458 25 7 3.8995 -0.5861 -0.0040 26 16 2.5471 -1.3668 0.0008 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.9807 2.0980 0.0004 31 1 5.5748 -0.6624 -0.7411 32 1 7.3129 -0.2830 -0.6825 33 1 7.1196 -3.7570 0.5236 34 1 6.7369 3.1899 -0.6748 35 1 7.9326 1.8785 -0.8123 36 1 8.0056 1.6862 1.6588 37 1 6.8100 2.9975 1.7963 38 1 10.2742 2.1921 1.0183 39 1 9.6066 2.6832 -0.5577 40 1 10.5933 4.9244 -0.3064 41 1 11.8599 3.6858 -0.1292 42 1 9.7522 6.0116 1.7396 43 1 10.4506 5.5063 3.2973 44 1 8.1781 4.5295 2.9166 45 1 9.4346 3.2762 3.0591 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277987692.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:24 Heat of formation + Delta-G solvation = -34.092773 kcal Electronic energy + Delta-G solvation = -27988.389528 eV Core-core repulsion = 24132.754240 eV Total energy + Delta-G solvation = -3855.635288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54727 -40.54703 -39.28976 -37.45740 -36.40901 -34.48821 -34.04074 -32.23239 -31.20712 -29.24202 -28.87036 -27.74997 -25.92038 -25.07455 -24.67678 -23.20031 -21.42429 -21.27944 -20.18392 -19.25625 -18.68458 -17.71195 -17.63579 -17.12479 -16.86889 -16.49000 -16.37274 -16.28894 -15.99609 -15.65303 -15.31936 -15.07589 -14.71343 -14.50545 -14.32263 -14.05720 -13.86281 -13.78618 -13.68579 -13.44876 -13.19866 -13.15064 -12.93298 -12.77005 -12.56044 -12.34482 -12.25164 -11.99165 -11.78802 -11.66898 -11.46708 -11.29925 -10.79642 -10.71940 -10.39865 -10.23578 -9.74073 -9.54788 -9.40539 -8.13322 -6.19009 -0.18843 0.65713 0.85365 1.08012 1.31916 1.34943 1.41959 2.09986 2.31316 2.40789 2.80097 2.96354 3.19029 3.61336 3.80750 3.88214 3.96658 3.98994 4.08544 4.17844 4.29541 4.36141 4.38005 4.41773 4.43950 4.55266 4.68544 4.75151 4.78785 4.82124 4.82289 4.85338 4.86210 4.99479 5.00392 5.00863 5.24762 5.40844 5.50215 5.75625 5.77158 5.88606 5.91760 6.14826 6.17309 6.43746 6.85378 7.16933 7.45120 8.94117 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011305 B = 0.003867 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.276123 B = 7239.513972 C = 8908.681408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.238 4.238 3 C -0.159 4.159 4 C 0.023 3.977 5 C 0.582 3.418 6 O -0.578 6.578 7 N -0.583 5.583 8 C 0.248 3.752 9 C -0.501 4.501 10 H 0.033 0.967 11 C 0.033 3.967 12 N -0.913 5.913 13 Si 0.932 3.068 14 H -0.275 1.275 15 H -0.279 1.279 16 H -0.281 1.281 17 C 0.131 3.869 18 C 0.062 3.938 19 N -0.533 5.533 20 C 0.011 3.989 21 C 0.069 3.931 22 O -0.404 6.404 23 C 0.070 3.930 24 C 0.015 3.985 25 N -0.475 5.475 26 S 0.438 5.562 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.171 0.829 31 H 0.070 0.930 32 H 0.010 0.990 33 H 0.263 0.737 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.024 0.976 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.118 0.882 44 H 0.090 0.910 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.927 8.398 -1.242 9.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.368 4.368 3 C -0.191 4.191 4 C -0.150 4.150 5 C 0.367 3.633 6 O -0.460 6.460 7 N -0.313 5.313 8 C 0.126 3.874 9 C -0.540 4.540 10 H 0.051 0.949 11 C -0.167 4.167 12 N -0.554 5.554 13 Si 0.758 3.242 14 H -0.200 1.200 15 H -0.205 1.205 16 H -0.206 1.206 17 C 0.008 3.992 18 C -0.067 4.067 19 N -0.259 5.259 20 C -0.118 4.118 21 C -0.008 4.008 22 O -0.323 6.323 23 C -0.007 4.007 24 C -0.114 4.114 25 N -0.309 5.309 26 S 0.593 5.407 27 H 0.114 0.886 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.188 0.812 31 H 0.087 0.913 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.042 0.958 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.135 0.865 42 H 0.087 0.913 43 H 0.136 0.864 44 H 0.108 0.892 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.218 7.194 -1.444 8.463 hybrid contribution 0.036 0.345 1.477 1.517 sum -4.182 7.539 0.033 8.621 Atomic orbital electron populations 1.20359 0.83300 1.04719 1.04440 1.26509 1.04692 0.98939 1.06676 1.21230 0.89581 1.02364 1.05954 1.21119 0.95189 0.89534 1.09181 1.17620 0.82582 0.86555 0.76536 1.90663 1.84174 1.17374 1.53739 1.48159 1.05122 1.09641 1.68333 1.19646 0.96237 0.74343 0.97162 1.21221 1.46801 0.94022 0.91991 0.94864 1.25290 0.95357 0.96918 0.99130 1.69987 1.49107 1.05647 1.30632 0.85972 0.78167 0.78124 0.81894 1.20026 1.20467 1.20602 1.21320 0.89347 0.92112 0.96462 1.22179 0.93677 0.93106 0.97737 1.62228 1.07887 1.35934 1.19841 1.22946 0.91244 0.97157 1.00412 1.22766 0.98024 0.95511 0.84464 1.87938 1.34266 1.79375 1.30674 1.22753 0.85117 0.94093 0.98729 1.22873 1.00367 0.98522 0.89613 1.73432 1.26257 1.10715 1.20465 1.80589 0.88475 1.14097 1.57521 0.88623 0.89220 0.89379 0.81163 0.91306 0.97178 0.92802 0.89907 0.89970 0.95787 0.92345 0.95447 0.88810 0.91176 0.86542 0.91308 0.86404 0.89152 0.95362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.46 71.24 0.75 -0.39 16 2 C -0.24 -6.42 6.58 24.94 0.16 -6.26 16 3 C -0.16 -5.30 9.93 21.83 0.22 -5.09 16 4 C 0.02 0.94 6.49 42.13 0.27 1.21 16 5 C 0.58 26.23 7.59 86.74 0.66 26.89 16 6 O -0.58 -26.75 16.29 -3.93 -0.06 -26.82 16 7 N -0.58 -26.16 2.48 -829.73 -2.06 -28.21 16 8 C 0.25 12.45 4.81 85.63 0.41 12.86 16 9 C -0.50 -26.97 8.14 25.60 0.21 -26.77 16 10 H 0.03 1.88 7.81 -2.91 -0.02 1.86 16 11 C 0.03 1.77 5.46 84.65 0.46 2.23 16 12 N -0.91 -51.06 13.29 21.45 0.28 -50.77 16 13 Si 0.93 43.51 29.54 68.60 2.03 45.54 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 17 C 0.13 5.04 5.35 86.38 0.46 5.50 16 18 C 0.06 2.34 5.28 86.30 0.46 2.80 16 19 N -0.53 -16.56 4.73 -895.23 -4.23 -20.79 16 20 C 0.01 0.30 5.44 86.31 0.47 0.76 16 21 C 0.07 1.57 7.01 72.01 0.50 2.07 16 22 O -0.40 -10.36 10.83 -148.98 -1.61 -11.97 16 23 C 0.07 1.55 7.01 72.02 0.50 2.05 16 24 C 0.01 0.40 5.64 86.32 0.49 0.88 16 25 N -0.48 -20.47 6.43 -75.30 -0.48 -20.96 16 26 S 0.44 14.23 23.20 -56.49 -1.31 12.92 16 27 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.17 5.21 8.00 -2.91 -0.02 5.18 16 31 H 0.07 3.66 5.26 -2.38 -0.01 3.65 16 32 H 0.01 0.54 7.82 -2.39 -0.02 0.52 16 33 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.08 3.13 7.48 -2.39 -0.02 3.12 16 35 H 0.08 2.95 6.22 -2.39 -0.01 2.93 16 36 H 0.02 1.04 8.08 -2.39 -0.02 1.02 16 37 H 0.06 2.37 8.04 -2.38 -0.02 2.35 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 2.50 6.38 -2.39 -0.02 2.49 16 40 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 43 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.09 2.34 8.09 -2.39 -0.02 2.32 16 45 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -67.19 378.05 -0.43 -67.62 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.99 Total: 14.67 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 6.02 Total: 18.77 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -6.49 Total: -120.73 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.68 Total: -38.79 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 14.23 SS G_CDS: -1.31 Total: 12.92 kcal Total: -67.19 -0.43 -67.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277987692.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.525 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds