Wall clock time and date at job start Tue Mar 31 2020 22:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46494 * 108.89527 * 2 1 4 4 C 1.34947 * 126.03717 * 283.67267 * 3 2 1 5 5 C 1.35316 * 107.74791 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03989 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47486 * 89.99943 * 6 5 4 8 8 C 1.36936 * 120.00257 * 89.99152 * 7 6 5 9 9 H 1.07993 * 120.00365 * 304.48284 * 8 7 6 10 10 C 1.38817 * 119.99429 * 124.47638 * 8 7 6 11 11 N 1.31619 * 119.99408 * 164.67672 * 10 8 7 12 12 Si 1.86793 * 120.00305 * 344.67525 * 10 8 7 13 13 H 1.48504 * 109.47284 * 91.90492 * 12 10 8 14 14 H 1.48500 * 109.47410 * 211.90458 * 12 10 8 15 15 H 1.48507 * 109.47282 * 331.90556 * 12 10 8 16 16 C 1.46501 * 119.99827 * 270.00396 * 7 6 5 17 17 C 1.52994 * 117.49870 * 183.06702 * 16 7 6 18 18 C 1.52997 * 117.50292 * 114.40230 * 16 7 6 19 19 C 1.39864 * 107.92184 * 0.25952 * 5 4 3 20 20 N 1.30844 * 108.20009 * 359.55830 * 19 5 4 21 21 C 1.52378 * 108.92744 * 118.66986 * 2 1 3 22 22 C 1.54212 * 112.29849 * 120.60489 * 21 2 1 23 23 S 1.83822 * 102.85947 * 25.04645 * 22 21 2 24 24 O 1.42095 * 109.81140 * 77.68711 * 23 22 21 25 25 O 1.42098 * 109.80935 * 212.03635 * 23 22 21 26 26 C 1.54207 * 108.81836 * 241.39046 * 2 1 3 27 27 H 1.09005 * 109.47490 * 59.30044 * 1 2 3 28 28 H 1.09004 * 109.47612 * 179.30107 * 1 2 3 29 29 H 1.09000 * 109.47111 * 299.29955 * 1 2 3 30 30 H 1.08004 * 126.13058 * 359.95245 * 4 3 2 31 31 H 1.08996 * 109.47040 * 329.99621 * 6 5 4 32 32 H 1.09006 * 109.46958 * 209.99541 * 6 5 4 33 33 H 0.97002 * 119.99423 * 179.97438 * 11 10 8 34 34 H 1.09004 * 115.54620 * 328.73165 * 16 7 6 35 35 H 1.08997 * 117.50321 * 359.97438 * 17 16 7 36 36 H 1.09005 * 117.50318 * 145.01648 * 17 16 7 37 37 H 1.08994 * 117.49676 * 214.97801 * 18 16 7 38 38 H 1.09001 * 117.49636 * 0.02562 * 18 16 7 39 39 H 1.08000 * 125.90658 * 179.74210 * 19 5 4 40 40 H 1.08999 * 108.92776 * 241.35285 * 21 2 1 41 41 H 1.09005 * 108.92676 * 359.97438 * 21 2 1 42 42 H 1.09000 * 110.73693 * 143.39126 * 22 21 2 43 43 H 1.09003 * 110.73280 * 266.70295 * 22 21 2 44 44 H 1.09002 * 110.73873 * 332.63145 * 26 2 1 45 45 H 1.09003 * 110.73141 * 95.94089 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0043 1.3860 0.0000 4 6 2.0174 2.2206 -1.0603 5 6 2.5279 3.4039 -0.6476 6 6 2.7271 4.6297 -1.5013 7 7 1.5218 5.4609 -1.4513 8 6 1.3975 6.4299 -0.4917 9 1 1.4914 6.1709 0.5526 10 6 1.1511 7.7450 -0.8613 11 7 0.7353 8.6137 0.0359 12 14 1.4095 8.2818 -2.6316 13 1 0.1374 8.1358 -3.3839 14 1 1.8412 9.7024 -2.6602 15 1 2.4553 7.4340 -3.2584 16 6 0.4492 5.2553 -2.4278 17 6 -0.7513 6.2018 -2.3683 18 6 -0.8966 4.7506 -1.9033 19 6 2.8430 3.2866 0.7101 20 7 2.5239 2.0793 1.1008 21 6 2.0242 -0.6915 1.2647 22 6 2.9011 -1.9215 0.9544 23 16 3.5609 -1.5420 -0.7188 24 8 4.6191 -0.5992 -0.6168 25 8 3.7436 -2.7471 -1.4492 26 6 2.0273 -0.6989 -1.2814 27 1 -0.3634 0.5247 -0.8837 28 1 -0.3634 -1.0276 -0.0125 29 1 -0.3633 0.5029 0.8962 30 1 1.6810 1.9862 -2.0595 31 1 2.9180 4.3281 -2.5311 32 1 3.5772 5.1996 -1.1260 33 1 0.5634 9.5328 -0.2223 34 1 0.7685 4.9084 -3.4106 35 1 -0.7434 6.9773 -1.6023 36 1 -1.2223 6.4775 -3.3119 37 1 -1.4628 4.0722 -2.5413 38 1 -0.9841 4.5720 -0.8316 39 1 3.2724 4.0599 1.3297 40 1 2.6064 0.0188 1.8515 41 1 1.1635 -1.0120 1.8518 42 1 3.7116 -2.0101 1.6779 43 1 2.2988 -2.8298 0.9349 44 1 1.2950 -1.4251 -1.6341 45 1 2.2517 0.0327 -2.0577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352732246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:02 Heat of formation + Delta-G solvation = 83.745562 kcal Electronic energy + Delta-G solvation = -28526.106278 eV Core-core repulsion = 24675.580843 eV Total energy + Delta-G solvation = -3850.525435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -41.10911 -37.93646 -37.30355 -37.06431 -36.30774 -33.20674 -32.11700 -31.86126 -29.70241 -29.51161 -28.36587 -25.81420 -24.49156 -23.20939 -22.09600 -21.54497 -20.05573 -19.75073 -19.29561 -19.06535 -17.42184 -16.82551 -16.69646 -16.52648 -16.01546 -15.21910 -14.88530 -14.61910 -14.47441 -14.15346 -14.01467 -13.66142 -13.38900 -13.24599 -13.17372 -12.68090 -12.64397 -12.44115 -12.40936 -12.33956 -12.32192 -12.01477 -11.85330 -11.64482 -11.48469 -11.12253 -11.01978 -10.72772 -10.63205 -10.45025 -10.32491 -10.02043 -9.75587 -9.46246 -9.12714 -8.98454 -8.43475 -7.89983 -6.40551 -5.98216 -3.66863 -0.35446 2.02758 2.23172 2.53218 3.13956 3.37412 3.41226 3.50502 3.53171 3.58064 3.86672 3.93152 4.15775 4.39895 4.55653 4.56461 4.70718 4.90199 4.99513 5.03962 5.07889 5.16667 5.23553 5.29738 5.35091 5.38881 5.48345 5.75961 5.80286 5.85728 5.94959 6.05771 6.13869 6.18462 6.44649 6.49338 6.59563 6.68968 6.86283 7.04346 7.14910 7.33025 7.37472 8.11061 8.14144 8.57415 9.06400 9.68019 10.18703 11.11532 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.003189 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.953667 B = 8778.005683 C = 8868.452278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.206 3.794 3 N -0.385 5.385 4 C 0.046 3.954 5 C -0.210 4.210 6 C 0.216 3.784 7 N -0.566 5.566 8 C -0.278 4.278 9 H 0.069 0.931 10 C 0.056 3.944 11 N -0.900 5.900 12 Si 0.884 3.116 13 H -0.272 1.272 14 H -0.306 1.306 15 H -0.270 1.270 16 C 0.113 3.887 17 C -0.199 4.199 18 C -0.213 4.213 19 C 0.075 3.925 20 N -0.306 5.306 21 C -0.131 4.131 22 C -0.573 4.573 23 S 2.375 3.625 24 O -0.911 6.911 25 O -0.937 6.937 26 C -0.599 4.599 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.264 0.736 34 H 0.084 0.916 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.181 0.819 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.154 0.846 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 -21.542 -1.528 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.120 3.880 3 N -0.170 5.170 4 C -0.098 4.098 5 C -0.223 4.223 6 C 0.089 3.911 7 N -0.285 5.285 8 C -0.407 4.407 9 H 0.087 0.913 10 C -0.146 4.146 11 N -0.539 5.539 12 Si 0.713 3.287 13 H -0.198 1.198 14 H -0.234 1.234 15 H -0.195 1.195 16 C 0.005 3.995 17 C -0.237 4.237 18 C -0.253 4.253 19 C -0.111 4.111 20 N -0.126 5.126 21 C -0.169 4.169 22 C -0.703 4.703 23 S 2.558 3.442 24 O -0.908 6.908 25 O -0.934 6.934 26 C -0.728 4.728 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.178 0.822 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.198 0.802 40 H 0.140 0.860 41 H 0.120 0.880 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.172 0.828 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.221 -22.465 -0.971 22.520 hybrid contribution -1.082 1.196 -1.233 2.030 sum 0.139 -21.270 -2.205 21.384 Atomic orbital electron populations 1.22376 0.91422 1.03161 1.04408 1.20367 0.96623 0.79036 0.91936 1.48527 1.51244 1.09569 1.07627 1.22001 1.03121 0.91199 0.93450 1.21206 1.08107 0.96994 0.95996 1.19303 0.89844 0.87342 0.94614 1.43598 1.13108 1.37731 1.34070 1.18524 1.48667 0.85389 0.88117 0.91308 1.25860 0.95627 0.95896 0.97235 1.69874 1.45079 1.04414 1.34511 0.86803 0.79129 0.76336 0.86443 1.19774 1.23377 1.19456 1.21283 0.83928 1.01361 0.92919 1.23497 1.03083 0.94623 1.02453 1.23315 1.04652 0.96482 1.00898 1.23791 0.98265 0.93826 0.95264 1.77018 1.19623 1.07175 1.08816 1.21992 1.02172 0.95458 0.97311 1.30353 1.11108 1.06052 1.22752 1.09651 0.78413 0.76407 0.79763 1.93701 1.49544 1.62142 1.85443 1.93620 1.85490 1.44666 1.69618 1.31069 1.22122 1.13834 1.05796 0.90965 0.90438 0.90758 0.82165 0.94005 0.91400 0.92634 0.89785 0.86261 0.90921 0.91546 0.89553 0.80202 0.86002 0.87987 0.84185 0.84416 0.82798 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.11 37.15 0.30 -0.97 16 2 C 0.21 1.96 1.08 -131.51 -0.14 1.82 16 3 N -0.38 -5.32 3.41 -48.37 -0.16 -5.48 16 4 C 0.05 0.69 10.14 -17.22 -0.17 0.51 16 5 C -0.21 -3.69 5.68 -105.06 -0.60 -4.29 16 6 C 0.22 4.14 6.19 -5.19 -0.03 4.11 16 7 N -0.57 -12.70 2.03 -167.02 -0.34 -13.04 16 8 C -0.28 -7.38 9.17 -15.06 -0.14 -7.52 16 9 H 0.07 2.04 8.06 -52.49 -0.42 1.61 16 10 C 0.06 1.54 3.74 -17.43 -0.07 1.48 16 11 N -0.90 -26.45 13.97 55.49 0.78 -25.68 16 12 Si 0.88 21.63 24.88 -169.99 -4.23 17.40 16 13 H -0.27 -6.37 5.80 56.52 0.33 -6.05 16 14 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 16 C 0.11 2.33 5.16 -67.93 -0.35 1.98 16 17 C -0.20 -4.29 6.69 -26.70 -0.18 -4.47 16 18 C -0.21 -4.16 10.36 -26.69 -0.28 -4.44 16 19 C 0.08 1.33 11.96 -17.36 -0.21 1.12 16 20 N -0.31 -5.04 10.76 30.62 0.33 -4.71 16 21 C -0.13 -1.07 5.72 -26.42 -0.15 -1.22 16 22 C -0.57 -3.47 7.40 37.79 0.28 -3.19 16 23 S 2.38 21.51 6.08 -107.50 -0.65 20.86 16 24 O -0.91 -12.51 18.16 -57.67 -1.05 -13.56 16 25 O -0.94 -10.79 18.16 -57.67 -1.05 -11.83 16 26 C -0.60 -4.39 6.41 37.79 0.24 -4.15 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.16 1.96 7.36 -52.48 -0.39 1.57 16 31 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 32 H 0.07 1.34 8.04 -51.93 -0.42 0.92 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 35 H 0.12 3.02 5.08 -51.93 -0.26 2.76 16 36 H 0.07 1.44 7.86 -51.93 -0.41 1.03 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 39 H 0.18 3.03 8.06 -52.49 -0.42 2.61 16 40 H 0.12 1.31 6.33 -51.93 -0.33 0.98 16 41 H 0.10 0.63 7.52 -51.93 -0.39 0.24 16 42 H 0.14 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.14 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.15 0.59 7.85 -51.93 -0.41 0.19 16 45 H 0.15 1.10 6.28 -51.93 -0.33 0.77 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -35.98 369.24 -9.09 -45.07 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.78 Total: 4.64 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -1.49 Total: -19.24 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: 0.60 Total: -48.91 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -2.09 Total: -25.39 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.23 Total: 17.40 kcal Atomic # 16 Polarization: 21.51 SS G_CDS: -0.65 Total: 20.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.98 -9.09 -45.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352732246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.818 kcal (2) G-P(sol) polarization free energy of solvation -35.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds