Wall clock time and date at job start Tue Mar 31 2020 22:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46494 * 108.89527 * 2 1 4 4 C 1.34947 * 126.03717 * 283.67267 * 3 2 1 5 5 C 1.35316 * 107.74791 * 179.97438 * 4 3 2 6 6 C 1.50701 * 126.03989 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47486 * 89.99943 * 6 5 4 8 8 C 1.36936 * 120.00257 * 89.99152 * 7 6 5 9 9 H 1.07993 * 120.00365 * 304.48284 * 8 7 6 10 10 C 1.38817 * 119.99429 * 124.47638 * 8 7 6 11 11 N 1.31619 * 119.99408 * 164.67672 * 10 8 7 12 12 Si 1.86793 * 120.00305 * 344.67525 * 10 8 7 13 13 H 1.48504 * 109.47284 * 91.90492 * 12 10 8 14 14 H 1.48500 * 109.47410 * 211.90458 * 12 10 8 15 15 H 1.48507 * 109.47282 * 331.90556 * 12 10 8 16 16 C 1.46501 * 119.99827 * 270.00396 * 7 6 5 17 17 C 1.52994 * 117.49870 * 183.06702 * 16 7 6 18 18 C 1.52997 * 117.50292 * 114.40230 * 16 7 6 19 19 C 1.39864 * 107.92184 * 0.25952 * 5 4 3 20 20 N 1.30844 * 108.20009 * 359.55830 * 19 5 4 21 21 C 1.52378 * 108.92744 * 118.66986 * 2 1 3 22 22 C 1.54212 * 112.29849 * 120.60489 * 21 2 1 23 23 S 1.83822 * 102.85947 * 25.04645 * 22 21 2 24 24 O 1.42095 * 109.81140 * 77.68711 * 23 22 21 25 25 O 1.42098 * 109.80935 * 212.03635 * 23 22 21 26 26 C 1.54207 * 108.81836 * 241.39046 * 2 1 3 27 27 H 1.09005 * 109.47490 * 59.30044 * 1 2 3 28 28 H 1.09004 * 109.47612 * 179.30107 * 1 2 3 29 29 H 1.09000 * 109.47111 * 299.29955 * 1 2 3 30 30 H 1.08004 * 126.13058 * 359.95245 * 4 3 2 31 31 H 1.08996 * 109.47040 * 329.99621 * 6 5 4 32 32 H 1.09006 * 109.46958 * 209.99541 * 6 5 4 33 33 H 0.97002 * 119.99423 * 179.97438 * 11 10 8 34 34 H 1.09004 * 115.54620 * 328.73165 * 16 7 6 35 35 H 1.08997 * 117.50321 * 359.97438 * 17 16 7 36 36 H 1.09005 * 117.50318 * 145.01648 * 17 16 7 37 37 H 1.08994 * 117.49676 * 214.97801 * 18 16 7 38 38 H 1.09001 * 117.49636 * 0.02562 * 18 16 7 39 39 H 1.08000 * 125.90658 * 179.74210 * 19 5 4 40 40 H 1.08999 * 108.92776 * 241.35285 * 21 2 1 41 41 H 1.09005 * 108.92676 * 359.97438 * 21 2 1 42 42 H 1.09000 * 110.73693 * 143.39126 * 22 21 2 43 43 H 1.09003 * 110.73280 * 266.70295 * 22 21 2 44 44 H 1.09002 * 110.73873 * 332.63145 * 26 2 1 45 45 H 1.09003 * 110.73141 * 95.94089 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0043 1.3860 0.0000 4 6 2.0174 2.2206 -1.0603 5 6 2.5279 3.4039 -0.6476 6 6 2.7271 4.6297 -1.5013 7 7 1.5218 5.4609 -1.4513 8 6 1.3975 6.4299 -0.4917 9 1 1.4914 6.1709 0.5526 10 6 1.1511 7.7450 -0.8613 11 7 0.7353 8.6137 0.0359 12 14 1.4095 8.2818 -2.6316 13 1 0.1374 8.1358 -3.3839 14 1 1.8412 9.7024 -2.6602 15 1 2.4553 7.4340 -3.2584 16 6 0.4492 5.2553 -2.4278 17 6 -0.7513 6.2018 -2.3683 18 6 -0.8966 4.7506 -1.9033 19 6 2.8430 3.2866 0.7101 20 7 2.5239 2.0793 1.1008 21 6 2.0242 -0.6915 1.2647 22 6 2.9011 -1.9215 0.9544 23 16 3.5609 -1.5420 -0.7188 24 8 4.6191 -0.5992 -0.6168 25 8 3.7436 -2.7471 -1.4492 26 6 2.0273 -0.6989 -1.2814 27 1 -0.3634 0.5247 -0.8837 28 1 -0.3634 -1.0276 -0.0125 29 1 -0.3633 0.5029 0.8962 30 1 1.6810 1.9862 -2.0595 31 1 2.9180 4.3281 -2.5311 32 1 3.5772 5.1996 -1.1260 33 1 0.5634 9.5328 -0.2223 34 1 0.7685 4.9084 -3.4106 35 1 -0.7434 6.9773 -1.6023 36 1 -1.2223 6.4775 -3.3119 37 1 -1.4628 4.0722 -2.5413 38 1 -0.9841 4.5720 -0.8316 39 1 3.2724 4.0599 1.3297 40 1 2.6064 0.0188 1.8515 41 1 1.1635 -1.0120 1.8518 42 1 3.7116 -2.0101 1.6779 43 1 2.2988 -2.8298 0.9349 44 1 1.2950 -1.4251 -1.6341 45 1 2.2517 0.0327 -2.0577 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352732246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:01 Heat of formation + Delta-G solvation = 57.196707 kcal Electronic energy + Delta-G solvation = -28527.257523 eV Core-core repulsion = 24675.580843 eV Total energy + Delta-G solvation = -3851.676679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.25405 -39.07250 -38.51394 -38.03933 -37.10830 -34.85231 -33.89117 -32.86244 -31.01866 -30.60452 -29.03052 -27.29089 -25.63664 -24.56509 -23.24087 -23.17073 -21.67385 -21.01796 -20.29867 -19.86995 -18.71444 -18.29996 -17.53377 -17.26176 -16.79634 -16.71445 -16.59325 -15.84137 -15.44934 -15.38055 -15.16944 -14.91364 -14.61760 -14.30699 -14.19186 -13.89185 -13.83283 -13.59244 -13.35390 -13.21522 -13.20091 -13.15905 -12.97878 -12.87963 -12.69496 -12.53808 -12.23367 -12.08368 -11.94870 -11.79896 -11.73775 -11.39061 -11.25640 -11.11640 -10.80174 -10.44892 -10.16589 -9.21008 -8.28983 -8.04059 -5.77480 -1.00876 1.04334 1.38770 1.47223 1.50612 1.57698 1.63449 2.00005 2.46514 2.52849 2.87210 3.08795 3.20117 3.25900 3.38767 3.52369 3.53320 3.84677 3.94739 4.03980 4.13266 4.15972 4.30552 4.39257 4.49449 4.52778 4.59751 4.63147 4.68180 4.73411 4.79275 4.84544 4.95693 5.03362 5.05059 5.15814 5.19544 5.25463 5.39327 5.44990 5.61226 5.83438 6.06206 6.27097 6.38782 6.85575 7.20823 7.68920 8.19595 9.03567 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021905 B = 0.003189 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.953667 B = 8778.005683 C = 8868.452278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.191 3.809 3 N -0.373 5.373 4 C 0.061 3.939 5 C -0.241 4.241 6 C 0.216 3.784 7 N -0.576 5.576 8 C -0.262 4.262 9 H 0.018 0.982 10 C 0.010 3.990 11 N -0.951 5.951 12 Si 0.945 3.055 13 H -0.251 1.251 14 H -0.319 1.319 15 H -0.258 1.258 16 C 0.109 3.891 17 C -0.217 4.217 18 C -0.190 4.190 19 C 0.044 3.956 20 N -0.318 5.318 21 C -0.135 4.135 22 C -0.545 4.545 23 S 2.366 3.634 24 O -0.972 6.972 25 O -0.967 6.967 26 C -0.582 4.582 27 H 0.070 0.930 28 H 0.121 0.879 29 H 0.054 0.946 30 H 0.198 0.802 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.262 0.738 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.054 0.946 39 H 0.167 0.833 40 H 0.092 0.908 41 H 0.130 0.870 42 H 0.149 0.851 43 H 0.180 0.820 44 H 0.201 0.799 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.473 -25.253 -4.294 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.107 3.893 3 N -0.157 5.157 4 C -0.085 4.085 5 C -0.254 4.254 6 C 0.091 3.909 7 N -0.296 5.296 8 C -0.393 4.393 9 H 0.036 0.964 10 C -0.188 4.188 11 N -0.594 5.594 12 Si 0.771 3.229 13 H -0.175 1.175 14 H -0.249 1.249 15 H -0.182 1.182 16 C 0.002 3.998 17 C -0.255 4.255 18 C -0.230 4.230 19 C -0.141 4.141 20 N -0.139 5.139 21 C -0.174 4.174 22 C -0.678 4.678 23 S 2.554 3.446 24 O -0.969 6.969 25 O -0.964 6.964 26 C -0.713 4.713 27 H 0.089 0.911 28 H 0.140 0.860 29 H 0.073 0.927 30 H 0.214 0.786 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.073 0.927 39 H 0.184 0.816 40 H 0.110 0.890 41 H 0.148 0.852 42 H 0.167 0.833 43 H 0.198 0.802 44 H 0.218 0.782 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -0.613 -26.240 -3.757 26.515 hybrid contribution -0.581 2.172 -0.223 2.260 sum -1.194 -24.068 -3.980 24.424 Atomic orbital electron populations 1.22429 0.89600 1.05766 1.03378 1.20945 0.97936 0.76783 0.93650 1.48949 1.49283 1.11005 1.06503 1.22420 1.01060 0.90189 0.94868 1.21041 1.10808 0.97811 0.95731 1.19307 0.87905 0.87257 0.96443 1.43684 1.14948 1.37472 1.33513 1.18207 1.47256 0.86619 0.87177 0.96432 1.26437 0.95574 0.95742 1.01039 1.70010 1.47736 1.04748 1.36881 0.85839 0.79987 0.75047 0.82017 1.17520 1.24872 1.18195 1.21583 0.83386 1.01073 0.93791 1.23413 1.04947 0.94639 1.02503 1.23225 1.04262 0.95790 0.99740 1.23774 0.99859 0.94498 0.95974 1.76969 1.19936 1.06773 1.10237 1.22046 1.03154 0.95515 0.96721 1.30253 1.11271 1.06805 1.19446 1.09590 0.78662 0.75376 0.80952 1.93633 1.53069 1.63576 1.86647 1.93579 1.86323 1.45353 1.71114 1.31044 1.21321 1.14308 1.04651 0.91124 0.86037 0.92702 0.78554 0.90988 0.93379 0.92918 0.85922 0.90580 0.88448 0.87207 0.92738 0.81582 0.88968 0.85216 0.83287 0.80237 0.78190 0.83124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.11 71.98 0.58 -1.23 16 2 C 0.19 2.95 1.08 3.80 0.00 2.95 16 3 N -0.37 -9.73 3.41 -306.94 -1.05 -10.78 16 4 C 0.06 1.68 10.14 83.54 0.85 2.53 16 5 C -0.24 -8.51 5.68 -20.15 -0.11 -8.63 16 6 C 0.22 8.25 6.19 85.63 0.53 8.78 16 7 N -0.58 -25.72 2.03 -682.34 -1.39 -27.11 16 8 C -0.26 -14.59 9.17 84.03 0.77 -13.82 16 9 H 0.02 1.16 8.06 -2.91 -0.02 1.13 16 10 C 0.01 0.55 3.74 84.86 0.32 0.87 16 11 N -0.95 -58.95 13.97 21.65 0.30 -58.64 16 12 Si 0.94 44.94 24.88 68.60 1.71 46.65 16 13 H -0.25 -10.97 5.80 99.48 0.58 -10.39 16 14 H -0.32 -15.83 7.11 99.48 0.71 -15.13 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 16 C 0.11 4.17 5.16 44.99 0.23 4.40 16 17 C -0.22 -8.93 6.69 30.62 0.20 -8.73 16 18 C -0.19 -6.89 10.36 30.62 0.32 -6.57 16 19 C 0.04 1.67 11.96 85.23 1.02 2.69 16 20 N -0.32 -10.72 10.76 -57.02 -0.61 -11.34 16 21 C -0.14 -1.80 5.72 30.80 0.18 -1.62 16 22 C -0.55 -4.60 7.40 72.39 0.54 -4.06 16 23 S 2.37 37.87 6.08 -56.49 -0.34 37.53 16 24 O -0.97 -26.78 18.16 -127.53 -2.32 -29.09 16 25 O -0.97 -20.29 18.16 -127.53 -2.32 -22.61 16 26 C -0.58 -5.99 6.41 72.39 0.46 -5.53 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.12 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.20 3.88 7.36 -2.91 -0.02 3.86 16 31 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 32 H 0.05 1.97 8.04 -2.38 -0.02 1.95 16 33 H 0.26 15.45 8.31 -92.71 -0.77 14.67 16 34 H 0.12 3.84 8.14 -2.38 -0.02 3.82 16 35 H 0.08 3.88 5.08 -2.39 -0.01 3.87 16 36 H 0.10 3.50 7.86 -2.38 -0.02 3.48 16 37 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.17 6.37 8.06 -2.91 -0.02 6.35 16 40 H 0.09 1.88 6.33 -2.39 -0.02 1.87 16 41 H 0.13 1.04 7.52 -2.38 -0.02 1.02 16 42 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.18 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.20 0.22 7.85 -2.39 -0.02 0.20 16 45 H 0.15 1.59 6.28 -2.39 -0.01 1.58 16 Total: -1.00 -85.84 369.24 0.73 -85.11 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.86 Total: 18.25 kcal Atomic # 6 Polarization: -33.85 SS G_CDS: 5.89 Total: -27.96 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -2.74 Total: -107.87 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -4.63 Total: -51.70 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.71 Total: 46.65 kcal Atomic # 16 Polarization: 37.87 SS G_CDS: -0.34 Total: 37.53 kcal Total: -85.84 0.73 -85.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352732246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.304 kcal (2) G-P(sol) polarization free energy of solvation -85.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds