Wall clock time and date at job start Tue Mar 31 2020 22:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00481 * 2 1 4 4 C 1.50700 * 109.47121 * 85.48325 * 3 2 1 5 5 H 1.07998 * 119.99896 * 355.06745 * 4 3 2 6 6 C 1.37878 * 119.99862 * 175.05895 * 4 3 2 7 7 N 1.31511 * 120.00028 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.46855 * 60.00228 * 8 6 4 10 10 H 1.48492 * 109.47389 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47091 * 300.00496 * 8 6 4 12 12 S 1.65603 * 120.00161 * 179.97438 * 2 1 3 13 13 O 1.42107 * 106.39878 * 18.36109 * 12 2 1 14 14 O 1.42107 * 106.40444 * 151.27667 * 12 2 1 15 15 N 1.65599 * 107.21961 * 264.82233 * 12 2 1 16 16 C 1.47060 * 136.06102 * 83.09437 * 15 12 2 17 17 C 1.53754 * 87.89138 * 152.96167 * 16 15 12 18 18 C 1.52999 * 114.39399 * 272.67705 * 17 16 15 19 19 C 1.52998 * 114.08492 * 139.77719 * 17 16 15 20 20 C 1.47067 * 136.05364 * 263.45919 * 15 12 2 21 21 H 1.08999 * 113.46542 * 92.30868 * 20 15 12 22 22 C 1.50694 * 113.47169 * 321.92782 * 20 15 12 23 23 C 1.38648 * 120.78866 * 328.13818 * 22 20 15 24 24 C 1.38210 * 119.16617 * 179.75623 * 23 22 20 25 25 N 1.31873 * 120.75956 * 0.53538 * 24 23 22 26 26 C 1.31876 * 121.72568 * 359.73192 * 25 24 23 27 27 C 1.38201 * 120.76328 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47170 * 94.42732 * 1 2 3 29 29 H 1.09007 * 109.47210 * 214.42161 * 1 2 3 30 30 H 1.08994 * 109.47441 * 334.43055 * 1 2 3 31 31 H 1.09006 * 109.46552 * 325.48672 * 3 2 1 32 32 H 1.08994 * 109.47320 * 205.49117 * 3 2 1 33 33 H 0.97003 * 119.99905 * 179.97438 * 7 6 4 34 34 H 1.09005 * 113.46341 * 267.69582 * 16 15 12 35 35 H 1.08997 * 113.46628 * 38.13115 * 16 15 12 36 36 H 1.09001 * 109.47007 * 153.23012 * 18 17 16 37 37 H 1.09008 * 109.46959 * 273.22836 * 18 17 16 38 38 H 1.08992 * 109.47051 * 33.22756 * 18 17 16 39 39 H 1.08995 * 109.47552 * 326.56274 * 19 17 16 40 40 H 1.08998 * 109.47019 * 86.56756 * 19 17 16 41 41 H 1.09003 * 109.46712 * 206.55893 * 19 17 16 42 42 H 1.08000 * 120.42202 * 0.02562 * 23 22 20 43 43 H 1.07992 * 119.62389 * 180.29463 * 24 23 22 44 44 H 1.07994 * 119.61885 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.41586 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3519 1.7596 1.4164 5 1 1.8772 1.2271 2.2272 6 6 3.0992 2.8886 1.6771 7 7 3.6769 3.5373 0.6897 8 14 3.2911 3.4968 3.4329 9 1 3.9367 2.4416 4.2544 10 1 4.1345 4.7189 3.4440 11 1 1.9540 3.8136 3.9959 12 16 2.2930 -1.4341 0.0006 13 8 1.3731 -2.4287 -0.4283 14 8 3.5290 -1.1842 -0.6546 15 7 2.6617 -1.7866 1.5761 16 6 1.9681 -2.4133 2.7113 17 6 3.3465 -2.8285 3.2512 18 6 3.8597 -4.1654 2.7123 19 6 3.4912 -2.6883 4.7678 20 6 3.8249 -1.6048 2.4575 21 1 3.7951 -0.6776 3.0298 22 6 5.1444 -1.8176 1.7615 23 6 5.2594 -2.7263 0.7207 24 6 6.4846 -2.8911 0.1027 25 7 7.5380 -2.2040 0.4995 26 6 7.4668 -1.3355 1.4893 27 6 6.2737 -1.1134 2.1504 28 1 -0.3633 -0.0793 -1.0246 29 1 -0.3634 -0.8478 0.5809 30 1 -0.3634 0.9269 0.4435 31 1 1.6458 2.0067 -0.5823 32 1 3.1825 1.1195 -0.4422 33 1 4.2023 4.3318 0.8731 34 1 1.4487 -1.6991 3.3505 35 1 1.3405 -3.2570 2.4244 36 1 4.9495 -4.1710 2.7325 37 1 3.4805 -4.9770 3.3334 38 1 3.5145 -4.3005 1.6874 39 1 2.9057 -1.8357 5.1115 40 1 3.1308 -3.5957 5.2525 41 1 4.5404 -2.5340 5.0199 42 1 4.4014 -3.2950 0.3939 43 1 6.5814 -3.5933 -0.7120 44 1 8.3509 -0.7909 1.7861 45 1 6.2217 -0.4004 2.9600 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431613747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:05 Heat of formation + Delta-G solvation = 3.189960 kcal Electronic energy + Delta-G solvation = -29884.398284 eV Core-core repulsion = 26030.379696 eV Total energy + Delta-G solvation = -3854.018588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.84275 -39.01068 -36.64113 -35.50683 -35.24636 -32.54916 -32.44131 -32.01864 -30.95244 -27.83627 -27.54431 -26.19798 -25.44070 -25.07134 -23.07323 -22.29252 -21.97269 -18.85890 -18.29394 -17.41154 -16.91479 -16.41112 -16.26323 -16.00656 -15.46976 -15.43392 -14.96121 -14.47464 -14.43272 -14.01132 -13.63436 -13.39535 -13.34859 -13.29116 -12.88543 -12.45112 -12.38281 -12.31947 -12.23412 -12.07169 -11.82531 -11.73599 -11.50708 -11.37166 -11.22540 -11.19071 -11.13288 -10.83735 -10.70109 -10.56417 -10.30364 -10.15599 -9.85686 -9.34156 -9.11170 -8.81445 -8.72966 -8.54998 -8.07084 -6.16159 -4.23570 1.13924 1.50077 1.54948 3.17383 3.24003 3.25746 3.38438 4.01838 4.11258 4.26638 4.29231 4.69468 4.71841 4.76204 4.79792 5.00091 5.12606 5.15666 5.17493 5.39094 5.45549 5.55038 5.58858 5.59535 5.71200 5.73623 5.81492 5.85118 5.96362 5.96709 6.00874 6.03273 6.06333 6.10658 6.21562 6.27032 6.35698 6.51969 6.55903 6.86073 7.00510 7.27838 7.37636 7.59703 7.79893 8.09948 8.27028 8.80605 9.42034 10.91682 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009328 B = 0.006506 C = 0.005586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3000.918114 B = 4302.381966 C = 5011.397689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.998 5.998 3 C 0.246 3.754 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.277 1.277 12 S 2.799 3.201 13 O -0.996 6.996 14 O -0.963 6.963 15 N -1.031 6.031 16 C 0.132 3.868 17 C -0.091 4.091 18 C -0.126 4.126 19 C -0.134 4.134 20 C 0.208 3.792 21 H 0.111 0.889 22 C -0.042 4.042 23 C -0.126 4.126 24 C 0.094 3.906 25 N -0.486 5.486 26 C 0.092 3.908 27 C -0.150 4.150 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.265 0.735 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.119 0.881 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 -12.590 7.416 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.840 5.840 3 C 0.124 3.876 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.719 3.281 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.202 1.202 12 S 2.809 3.191 13 O -0.981 6.981 14 O -0.948 6.948 15 N -0.868 5.868 16 C 0.006 3.994 17 C -0.094 4.094 18 C -0.183 4.183 19 C -0.193 4.193 20 C 0.101 3.899 21 H 0.128 0.872 22 C -0.051 4.051 23 C -0.146 4.146 24 C -0.062 4.062 25 N -0.196 5.196 26 C -0.065 4.065 27 C -0.170 4.170 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.137 0.863 43 H 0.167 0.833 44 H 0.170 0.830 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.735 -12.992 5.884 14.282 hybrid contribution -1.014 1.269 1.519 2.224 sum -0.279 -11.723 7.403 13.868 Atomic orbital electron populations 1.21218 0.80279 1.02277 1.00344 1.57760 1.14128 1.23769 1.88350 1.19195 0.92133 0.78843 0.97461 1.21465 1.32187 1.11189 0.93055 0.92160 1.24960 0.95223 0.96464 0.97174 1.69924 1.32625 1.18655 1.31234 0.86667 0.78188 0.78442 0.84763 1.20013 1.21136 1.20228 1.01449 0.72955 0.72553 0.72094 1.93537 1.65338 1.59288 1.79905 1.93623 1.43954 1.85541 1.71640 1.60750 1.24868 1.74910 1.26252 1.22621 0.94571 0.96309 0.85889 1.22414 0.96440 0.95221 0.95339 1.21661 1.01314 0.94285 1.01063 1.21686 1.02437 1.02197 0.92931 1.21110 0.81935 0.98663 0.88208 0.87182 1.20182 0.95130 0.94441 0.95379 1.21785 0.98682 0.98337 0.95830 1.22545 0.88359 0.97400 0.97931 1.67597 1.32292 1.06613 1.13055 1.22609 0.97203 0.94838 0.91892 1.21933 0.93431 0.99862 1.01816 0.93869 0.93066 0.90682 0.94841 0.93043 0.92474 0.89785 0.90328 0.91793 0.92032 0.92091 0.91801 0.92016 0.91984 0.86312 0.83254 0.83048 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.87 10.26 59.84 0.61 2.48 16 2 N -1.00 -21.15 3.22 -123.06 -0.40 -21.55 16 3 C 0.25 6.15 5.40 -5.19 -0.03 6.13 16 4 C -0.54 -13.83 9.38 -34.44 -0.32 -14.15 16 5 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 6 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 8 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 9 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 12 S 2.80 56.92 6.09 -107.50 -0.65 56.26 16 13 O -1.00 -20.83 17.13 -57.17 -0.98 -21.81 16 14 O -0.96 -22.26 13.83 -57.17 -0.79 -23.06 16 15 N -1.03 -17.30 3.42 -118.95 -0.41 -17.70 16 16 C 0.13 1.69 7.85 -8.38 -0.07 1.62 16 17 C -0.09 -1.06 1.44 -153.86 -0.22 -1.28 16 18 C -0.13 -1.37 7.63 37.16 0.28 -1.09 16 19 C -0.13 -1.24 9.30 37.16 0.35 -0.90 16 20 C 0.21 3.20 3.88 -73.56 -0.29 2.92 16 21 H 0.11 1.78 8.09 -51.93 -0.42 1.36 16 22 C -0.04 -0.69 4.23 -104.32 -0.44 -1.13 16 23 C -0.13 -2.08 5.23 -39.44 -0.21 -2.29 16 24 C 0.09 1.52 11.18 -17.54 -0.20 1.32 16 25 N -0.49 -8.18 10.36 -13.25 -0.14 -8.32 16 26 C 0.09 1.42 11.18 -17.55 -0.20 1.22 16 27 C -0.15 -2.36 9.83 -39.44 -0.39 -2.74 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 30 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 31 H 0.03 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.05 1.44 6.99 -51.93 -0.36 1.08 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 34 H 0.08 0.98 7.93 -51.93 -0.41 0.57 16 35 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 36 H 0.06 0.71 6.89 -51.93 -0.36 0.35 16 37 H 0.06 0.54 8.13 -51.92 -0.42 0.12 16 38 H 0.06 0.73 6.31 -51.93 -0.33 0.40 16 39 H 0.06 0.58 7.89 -51.93 -0.41 0.18 16 40 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.12 1.91 5.49 -52.49 -0.29 1.62 16 43 H 0.15 2.01 8.06 -52.49 -0.42 1.58 16 44 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 45 H 0.13 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -32.74 374.98 -9.95 -42.70 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.75 Total: 3.50 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.21 Total: -6.26 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -0.20 Total: -71.92 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -1.77 Total: -44.86 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 56.92 SS G_CDS: -0.65 Total: 56.26 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.74 -9.95 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431613747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.887 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds