Wall clock time and date at job start Tue Mar 31 2020 22:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39869 * 126.03856 * 2 1 4 4 N 1.30837 * 108.20420 * 180.02562 * 3 2 1 5 5 N 1.40081 * 108.20447 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.03832 * 180.02562 * 5 4 3 7 7 H 1.09001 * 110.77896 * 338.03697 * 6 5 4 8 8 C 1.55154 * 110.72272 * 101.27523 * 6 5 4 9 9 C 1.55132 * 101.48236 * 82.69760 * 8 6 5 10 10 N 1.47423 * 104.72449 * 37.30010 * 9 8 6 11 11 S 1.65596 * 125.65092 * 155.82034 * 10 9 8 12 12 O 1.42098 * 104.27789 * 153.61568 * 11 10 9 13 13 O 1.42101 * 104.27888 * 25.75610 * 11 10 9 14 14 C 1.81400 * 104.44782 * 269.68918 * 11 10 9 15 15 C 1.52998 * 109.47123 * 188.40706 * 14 11 10 16 16 C 1.50703 * 115.54929 * 319.78769 * 15 14 11 17 17 H 1.07997 * 120.00092 * 99.78954 * 16 15 14 18 18 C 1.37879 * 119.99393 * 279.78114 * 16 15 14 19 19 N 1.31515 * 119.99627 * 189.42587 * 18 16 15 20 20 Si 1.86798 * 120.00176 * 9.43800 * 18 16 15 21 21 H 1.48505 * 109.47142 * 91.10112 * 20 18 16 22 22 H 1.48507 * 109.46871 * 211.10032 * 20 18 16 23 23 H 1.48499 * 109.47315 * 331.09771 * 20 18 16 24 24 C 1.53002 * 117.50146 * 174.11403 * 15 14 11 25 25 C 1.52997 * 60.03297 * 252.47816 * 24 15 14 26 26 C 1.47024 * 108.69849 * 335.54806 * 10 9 8 27 27 C 1.34942 * 107.92723 * 0.26274 * 5 4 3 28 28 H 1.08997 * 109.46864 * 89.97810 * 1 2 3 29 29 H 1.09000 * 109.46468 * 209.97494 * 1 2 3 30 30 H 1.08993 * 109.46792 * 329.97501 * 1 2 3 31 31 H 1.08000 * 125.89946 * 359.97426 * 3 2 1 32 32 H 1.08997 * 111.00941 * 200.93895 * 8 6 5 33 33 H 1.09000 * 111.00804 * 324.75300 * 8 6 5 34 34 H 1.09003 * 110.49775 * 278.45578 * 9 8 6 35 35 H 1.09000 * 110.34143 * 156.06101 * 9 8 6 36 36 H 1.09003 * 109.47374 * 68.40595 * 14 11 10 37 37 H 1.09003 * 109.46827 * 308.40349 * 14 11 10 38 38 H 0.97002 * 120.00117 * 180.02562 * 19 18 16 39 39 H 1.09005 * 117.49577 * 359.97369 * 24 15 14 40 40 H 1.08992 * 117.50076 * 144.97326 * 24 15 14 41 41 H 1.08998 * 117.50525 * 107.49980 * 25 24 15 42 42 H 1.09000 * 117.49319 * 252.52280 * 25 24 15 43 43 H 1.08999 * 109.87792 * 120.70677 * 26 10 9 44 44 H 1.09002 * 109.88581 * 241.71646 * 26 10 9 45 45 H 1.08003 * 126.12804 * 179.73405 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 -0.0006 5 7 3.5845 -0.6705 -0.0003 6 6 4.7746 -1.5247 -0.0003 7 1 5.6399 -0.9824 -0.3815 8 6 5.0553 -2.0751 1.4230 9 6 4.0942 -3.2916 1.4787 10 7 4.1330 -3.8623 0.1200 11 16 3.7833 -5.4312 -0.2783 12 8 3.3486 -5.3613 -1.6293 13 8 2.9069 -5.8672 0.7518 14 6 5.3759 -6.2924 -0.1657 15 6 5.2274 -7.7129 -0.7142 16 6 3.9497 -8.4218 -0.3453 17 1 3.1348 -8.4689 -1.0524 18 6 3.8214 -9.0103 0.8949 19 7 2.7892 -9.7838 1.1521 20 14 5.1132 -8.7088 2.2100 21 1 4.7215 -7.5332 3.0285 22 1 5.2202 -9.9059 3.0825 23 1 6.4250 -8.4479 1.5648 24 6 6.4958 -8.5599 -0.8347 25 6 5.8250 -8.0051 -2.0929 26 6 4.5271 -2.8061 -0.8238 27 6 2.3033 -1.0941 -0.0055 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3632 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 1.9951 2.1578 -0.0004 32 1 6.0943 -2.3889 1.5227 33 1 4.7968 -1.3393 2.1845 34 1 3.0830 -2.9681 1.7256 35 1 4.4484 -4.0213 2.2068 36 1 5.6923 -6.3365 0.8764 37 1 6.1223 -5.7536 -0.7496 38 1 2.6987 -10.1976 2.0247 39 1 7.4363 -8.1049 -0.5236 40 1 6.4063 -9.6298 -0.6467 41 1 6.3239 -7.1852 -2.6095 42 1 5.2938 -8.7101 -2.7324 43 1 5.4407 -3.0952 -1.3432 44 1 3.7282 -2.6370 -1.5458 45 1 1.9726 -2.1223 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520969951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:41 Heat of formation + Delta-G solvation = 44.707131 kcal Electronic energy + Delta-G solvation = -28567.284797 eV Core-core repulsion = 24715.066529 eV Total energy + Delta-G solvation = -3852.218268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48664 -38.54843 -37.13280 -36.35930 -35.14155 -33.22893 -32.25251 -31.60615 -30.18026 -28.92012 -28.63604 -26.38788 -25.58813 -22.92954 -22.43830 -21.71965 -20.43347 -20.18290 -19.48033 -18.61509 -17.49224 -17.18325 -16.68167 -15.61975 -15.38887 -15.28353 -14.95053 -14.66846 -14.36159 -14.12110 -13.82152 -13.71201 -13.30097 -13.19683 -13.07875 -12.92213 -12.78472 -12.59988 -12.57399 -12.11461 -11.85231 -11.68035 -11.58013 -11.39724 -11.27382 -11.18488 -11.11845 -10.93527 -10.70375 -10.67487 -10.48756 -10.22033 -9.72739 -9.51328 -9.20136 -9.00181 -8.69847 -8.51910 -8.40372 -6.25683 -4.37376 0.81014 1.78063 2.30406 2.70360 3.18132 3.21885 3.27705 3.28938 3.98006 4.10318 4.30454 4.45704 4.59083 4.66397 4.67152 4.79623 4.91320 4.97209 4.99479 5.02839 5.22700 5.25634 5.34644 5.35253 5.46141 5.50979 5.52912 5.59206 5.65538 5.73731 5.77857 5.90625 5.94818 5.99809 6.05758 6.09372 6.15015 6.38417 6.40610 6.54567 6.58055 6.79520 6.92922 7.04460 7.54252 7.61180 8.29620 8.80000 9.37251 10.85581 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.003633 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.128404 B = 7704.929045 C = 7933.945341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.246 4.246 3 C 0.048 3.952 4 N -0.299 5.299 5 N -0.363 5.363 6 C 0.152 3.848 7 H 0.122 0.878 8 C -0.141 4.141 9 C 0.115 3.885 10 N -1.028 6.028 11 S 2.638 3.362 12 O -0.955 6.955 13 O -0.925 6.925 14 C -0.582 4.582 15 C 0.006 3.994 16 C -0.542 4.542 17 H 0.087 0.913 18 C 0.109 3.891 19 N -0.870 5.870 20 Si 0.848 3.152 21 H -0.269 1.269 22 H -0.283 1.283 23 H -0.244 1.244 24 C -0.174 4.174 25 C -0.175 4.175 26 C 0.110 3.890 27 C 0.064 3.936 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.181 0.819 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.269 0.731 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.722 18.628 0.015 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.257 4.257 3 C -0.138 4.138 4 N -0.119 5.119 5 N -0.145 5.145 6 C 0.048 3.952 7 H 0.140 0.860 8 C -0.181 4.181 9 C -0.010 4.010 10 N -0.865 5.865 11 S 2.735 3.265 12 O -0.946 6.946 13 O -0.915 6.915 14 C -0.713 4.713 15 C 0.003 3.997 16 C -0.579 4.579 17 H 0.105 0.895 18 C -0.098 4.098 19 N -0.503 5.503 20 Si 0.673 3.327 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.167 1.167 24 C -0.212 4.212 25 C -0.212 4.212 26 C -0.017 4.017 27 C -0.082 4.082 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.197 0.803 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 5.073 18.388 -0.087 19.075 hybrid contribution 0.561 -0.264 1.000 1.176 sum 5.634 18.124 0.913 19.001 Atomic orbital electron populations 1.20058 0.89326 1.02146 1.01611 1.20160 0.97203 0.91790 1.16588 1.23760 0.90002 0.99669 1.00347 1.77298 1.21290 0.88719 1.24603 1.48568 1.04978 1.04285 1.56664 1.22239 0.86089 0.89446 0.97397 0.85983 1.23328 1.01285 0.97746 0.95733 1.22075 0.99800 0.95287 0.83872 1.59519 1.86380 1.26624 1.13940 1.04498 0.77199 0.70477 0.74361 1.93499 1.79557 1.85022 1.36478 1.93585 1.60413 1.78800 1.58716 1.30329 1.21850 1.10326 1.08795 1.18741 0.95340 0.88580 0.97026 1.20435 0.97973 1.37449 1.02091 0.89495 1.24854 0.94813 0.92341 0.97840 1.69877 1.29370 1.28179 1.22854 0.87305 0.83876 0.79019 0.82474 1.19414 1.20931 1.16714 1.22970 0.95811 1.00041 1.02401 1.22959 1.04254 1.02907 0.91038 1.22014 1.01913 0.85762 0.91989 1.22426 0.84250 1.00344 1.01155 0.92120 0.91997 0.91988 0.80251 0.88347 0.89189 0.91051 0.89814 0.86855 0.87330 0.92048 0.90997 0.89087 0.90669 0.88874 0.89428 0.89880 0.81136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.37 36.01 0.37 -0.29 16 2 C -0.25 -2.79 6.10 -105.05 -0.64 -3.43 16 3 C 0.05 0.53 11.96 -17.37 -0.21 0.32 16 4 N -0.30 -3.75 12.58 30.62 0.39 -3.36 16 5 N -0.36 -4.32 3.61 -53.09 -0.19 -4.52 16 6 C 0.15 1.50 4.17 -66.10 -0.28 1.23 16 7 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 8 C -0.14 -1.28 6.78 -24.46 -0.17 -1.44 16 9 C 0.11 1.40 6.33 -2.41 -0.02 1.38 16 10 N -1.03 -14.63 3.62 -111.29 -0.40 -15.03 16 11 S 2.64 52.57 4.77 -107.50 -0.51 52.06 16 12 O -0.95 -21.13 17.60 -57.54 -1.01 -22.14 16 13 O -0.92 -22.17 16.89 -57.54 -0.97 -23.14 16 14 C -0.58 -10.96 5.85 37.16 0.22 -10.75 16 15 C 0.01 0.13 1.10 -155.62 -0.17 -0.04 16 16 C -0.54 -14.93 7.54 -34.44 -0.26 -15.19 16 17 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 18 C 0.11 3.09 5.47 -17.82 -0.10 2.99 16 19 N -0.87 -26.18 13.96 55.43 0.77 -25.41 16 20 Si 0.85 20.29 25.41 -169.99 -4.32 15.97 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.24 -5.24 5.52 56.52 0.31 -4.93 16 24 C -0.17 -3.50 7.48 -26.73 -0.20 -3.70 16 25 C -0.17 -3.46 9.89 -26.69 -0.26 -3.72 16 26 C 0.11 1.26 5.97 -3.06 -0.02 1.24 16 27 C 0.06 0.79 9.06 -17.22 -0.16 0.63 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.88 7.04 -51.93 -0.37 0.52 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.11 2.04 6.18 -51.92 -0.32 1.72 16 37 H 0.11 1.59 7.95 -51.92 -0.41 1.18 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 41 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.04 7.46 -51.93 -0.39 0.65 16 45 H 0.17 2.14 7.42 -52.48 -0.39 1.75 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -35.07 374.38 -9.51 -44.58 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.02 Total: 6.10 kcal Atomic # 6 Polarization: -28.87 SS G_CDS: -1.88 Total: -30.75 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.56 Total: -48.32 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -1.98 Total: -45.28 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.32 Total: 15.97 kcal Atomic # 16 Polarization: 52.57 SS G_CDS: -0.51 Total: 52.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.07 -9.51 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520969951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.283 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds