Wall clock time and date at job start Tue Mar 31 2020 22:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39869 * 126.03856 * 2 1 4 4 N 1.30837 * 108.20420 * 180.02562 * 3 2 1 5 5 N 1.40081 * 108.20447 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.03832 * 180.02562 * 5 4 3 7 7 H 1.09001 * 110.77896 * 338.03697 * 6 5 4 8 8 C 1.55154 * 110.72272 * 101.27523 * 6 5 4 9 9 C 1.55132 * 101.48236 * 82.69760 * 8 6 5 10 10 N 1.47423 * 104.72449 * 37.30010 * 9 8 6 11 11 S 1.65596 * 125.65092 * 155.82034 * 10 9 8 12 12 O 1.42098 * 104.27789 * 153.61568 * 11 10 9 13 13 O 1.42101 * 104.27888 * 25.75610 * 11 10 9 14 14 C 1.81400 * 104.44782 * 269.68918 * 11 10 9 15 15 C 1.52998 * 109.47123 * 188.40706 * 14 11 10 16 16 C 1.50703 * 115.54929 * 319.78769 * 15 14 11 17 17 H 1.07997 * 120.00092 * 99.78954 * 16 15 14 18 18 C 1.37879 * 119.99393 * 279.78114 * 16 15 14 19 19 N 1.31515 * 119.99627 * 189.42587 * 18 16 15 20 20 Si 1.86798 * 120.00176 * 9.43800 * 18 16 15 21 21 H 1.48505 * 109.47142 * 91.10112 * 20 18 16 22 22 H 1.48507 * 109.46871 * 211.10032 * 20 18 16 23 23 H 1.48499 * 109.47315 * 331.09771 * 20 18 16 24 24 C 1.53002 * 117.50146 * 174.11403 * 15 14 11 25 25 C 1.52997 * 60.03297 * 252.47816 * 24 15 14 26 26 C 1.47024 * 108.69849 * 335.54806 * 10 9 8 27 27 C 1.34942 * 107.92723 * 0.26274 * 5 4 3 28 28 H 1.08997 * 109.46864 * 89.97810 * 1 2 3 29 29 H 1.09000 * 109.46468 * 209.97494 * 1 2 3 30 30 H 1.08993 * 109.46792 * 329.97501 * 1 2 3 31 31 H 1.08000 * 125.89946 * 359.97426 * 3 2 1 32 32 H 1.08997 * 111.00941 * 200.93895 * 8 6 5 33 33 H 1.09000 * 111.00804 * 324.75300 * 8 6 5 34 34 H 1.09003 * 110.49775 * 278.45578 * 9 8 6 35 35 H 1.09000 * 110.34143 * 156.06101 * 9 8 6 36 36 H 1.09003 * 109.47374 * 68.40595 * 14 11 10 37 37 H 1.09003 * 109.46827 * 308.40349 * 14 11 10 38 38 H 0.97002 * 120.00117 * 180.02562 * 19 18 16 39 39 H 1.09005 * 117.49577 * 359.97369 * 24 15 14 40 40 H 1.08992 * 117.50076 * 144.97326 * 24 15 14 41 41 H 1.08998 * 117.50525 * 107.49980 * 25 24 15 42 42 H 1.09000 * 117.49319 * 252.52280 * 25 24 15 43 43 H 1.08999 * 109.87792 * 120.70677 * 26 10 9 44 44 H 1.09002 * 109.88581 * 241.71646 * 26 10 9 45 45 H 1.08003 * 126.12804 * 179.73405 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 -0.0006 5 7 3.5845 -0.6705 -0.0003 6 6 4.7746 -1.5247 -0.0003 7 1 5.6399 -0.9824 -0.3815 8 6 5.0553 -2.0751 1.4230 9 6 4.0942 -3.2916 1.4787 10 7 4.1330 -3.8623 0.1200 11 16 3.7833 -5.4312 -0.2783 12 8 3.3486 -5.3613 -1.6293 13 8 2.9069 -5.8672 0.7518 14 6 5.3759 -6.2924 -0.1657 15 6 5.2274 -7.7129 -0.7142 16 6 3.9497 -8.4218 -0.3453 17 1 3.1348 -8.4689 -1.0524 18 6 3.8214 -9.0103 0.8949 19 7 2.7892 -9.7838 1.1521 20 14 5.1132 -8.7088 2.2100 21 1 4.7215 -7.5332 3.0285 22 1 5.2202 -9.9059 3.0825 23 1 6.4250 -8.4479 1.5648 24 6 6.4958 -8.5599 -0.8347 25 6 5.8250 -8.0051 -2.0929 26 6 4.5271 -2.8061 -0.8238 27 6 2.3033 -1.0941 -0.0055 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3632 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 1.9951 2.1578 -0.0004 32 1 6.0943 -2.3889 1.5227 33 1 4.7968 -1.3393 2.1845 34 1 3.0830 -2.9681 1.7256 35 1 4.4484 -4.0213 2.2068 36 1 5.6923 -6.3365 0.8764 37 1 6.1223 -5.7536 -0.7496 38 1 2.6987 -10.1976 2.0247 39 1 7.4363 -8.1049 -0.5236 40 1 6.4063 -9.6298 -0.6467 41 1 6.3239 -7.1852 -2.6095 42 1 5.2938 -8.7101 -2.7324 43 1 5.4407 -3.0952 -1.3432 44 1 3.7282 -2.6370 -1.5458 45 1 1.9726 -2.1223 -0.0108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520969951.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:40 Heat of formation + Delta-G solvation = 18.560060 kcal Electronic energy + Delta-G solvation = -28568.418619 eV Core-core repulsion = 24715.066529 eV Total energy + Delta-G solvation = -3853.352090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.33780 -39.46249 -38.79989 -38.02685 -36.81003 -34.36120 -34.11594 -32.46600 -31.05718 -30.17781 -29.79577 -27.65548 -27.19189 -23.90871 -23.29116 -23.28515 -21.24999 -21.23618 -21.06266 -20.00319 -18.90132 -18.45783 -18.14650 -17.15310 -16.91124 -16.49034 -16.22013 -15.83116 -15.54037 -15.36961 -14.94781 -14.86826 -14.82003 -14.47616 -14.22842 -14.07139 -14.00231 -13.75317 -13.56911 -13.17509 -13.01958 -12.93097 -12.90905 -12.78645 -12.70114 -12.59585 -12.33870 -12.30827 -12.25591 -12.14555 -11.87753 -11.60014 -11.54462 -10.83580 -10.79295 -10.40032 -10.35395 -9.99486 -9.25914 -8.38803 -6.54888 -0.69147 0.88299 1.30962 1.32939 1.45017 1.50598 1.85766 1.90364 2.32768 2.95321 2.96925 3.04195 3.16715 3.20455 3.57425 3.76182 3.82680 3.90276 3.94654 4.12038 4.17212 4.21106 4.37061 4.40893 4.44620 4.45558 4.57991 4.59421 4.62560 4.66594 4.81233 4.88211 4.90117 4.91939 4.94920 4.96968 5.04200 5.19254 5.22746 5.29692 5.31743 5.50520 5.60561 5.78960 6.07300 6.15656 6.60646 6.74762 7.23274 8.77484 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019016 B = 0.003633 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.128404 B = 7704.929045 C = 7933.945341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.253 4.253 3 C 0.048 3.952 4 N -0.315 5.315 5 N -0.366 5.366 6 C 0.152 3.848 7 H 0.152 0.848 8 C -0.124 4.124 9 C 0.104 3.896 10 N -1.021 6.021 11 S 2.636 3.364 12 O -0.993 6.993 13 O -0.984 6.984 14 C -0.570 4.570 15 C -0.033 4.033 16 C -0.543 4.543 17 H 0.026 0.974 18 C 0.047 3.953 19 N -0.932 5.932 20 Si 0.900 3.100 21 H -0.263 1.263 22 H -0.286 1.286 23 H -0.193 1.193 24 C -0.158 4.158 25 C -0.168 4.168 26 C 0.103 3.897 27 C 0.043 3.957 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.210 0.790 32 H 0.132 0.868 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.165 0.835 38 H 0.269 0.731 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.122 0.878 44 H 0.063 0.937 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.187 21.537 0.447 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.264 4.264 3 C -0.138 4.138 4 N -0.136 5.136 5 N -0.149 5.149 6 C 0.049 3.951 7 H 0.169 0.831 8 C -0.163 4.163 9 C -0.021 4.021 10 N -0.860 5.860 11 S 2.736 3.264 12 O -0.983 6.983 13 O -0.974 6.974 14 C -0.703 4.703 15 C -0.035 4.035 16 C -0.580 4.580 17 H 0.044 0.956 18 C -0.155 4.155 19 N -0.568 5.568 20 Si 0.720 3.280 21 H -0.188 1.188 22 H -0.212 1.212 23 H -0.114 1.114 24 C -0.197 4.197 25 C -0.205 4.205 26 C -0.023 4.023 27 C -0.103 4.103 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.226 0.774 32 H 0.150 0.850 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.148 0.852 37 H 0.183 0.817 38 H 0.078 0.922 39 H 0.133 0.867 40 H 0.094 0.906 41 H 0.135 0.865 42 H 0.092 0.908 43 H 0.140 0.860 44 H 0.082 0.918 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.533 21.308 0.310 23.346 hybrid contribution -0.949 -1.135 0.732 1.651 sum 8.583 20.174 1.042 21.948 Atomic orbital electron populations 1.20109 0.88153 1.02789 1.02062 1.20496 0.98248 0.91794 1.15883 1.24251 0.89396 1.00835 0.99323 1.77243 1.22121 0.88957 1.25253 1.48767 1.05167 1.04330 1.56601 1.22465 0.86222 0.88668 0.97755 0.83071 1.23322 1.02040 0.95816 0.95154 1.22303 1.00363 0.96754 0.82699 1.58887 1.86290 1.25237 1.15559 1.04028 0.77927 0.71567 0.72831 1.93441 1.80919 1.85976 1.38012 1.93513 1.63308 1.80611 1.59955 1.30135 1.21636 1.07868 1.10649 1.18689 0.94185 0.90565 1.00105 1.20543 0.99078 1.37561 1.00846 0.95567 1.25859 0.97246 0.91832 1.00513 1.70048 1.32540 1.30682 1.23570 0.86491 0.83165 0.78934 0.79368 1.18822 1.21195 1.11374 1.23061 0.95829 0.99148 1.01626 1.23087 1.03408 1.03646 0.90344 1.22302 1.02701 0.85788 0.91528 1.22422 0.85258 1.00144 1.02504 0.91723 0.92685 0.90027 0.77351 0.85026 0.88796 0.92489 0.89547 0.85218 0.81749 0.92186 0.86658 0.90552 0.86519 0.90761 0.86011 0.91834 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.37 71.24 0.74 -0.55 16 2 C -0.25 -5.57 6.10 -20.14 -0.12 -5.70 16 3 C 0.05 0.96 11.96 85.24 1.02 1.98 16 4 N -0.32 -7.25 12.58 -57.02 -0.72 -7.97 16 5 N -0.37 -8.14 3.61 -321.87 -1.16 -9.30 16 6 C 0.15 2.52 4.17 46.18 0.19 2.72 16 7 H 0.15 1.69 8.14 -2.39 -0.02 1.67 16 8 C -0.12 -1.79 6.78 32.06 0.22 -1.57 16 9 C 0.10 2.37 6.33 86.93 0.55 2.92 16 10 N -1.02 -27.59 3.62 -506.01 -1.83 -29.42 16 11 S 2.64 105.10 4.77 -56.49 -0.27 104.83 16 12 O -0.99 -45.16 17.60 -127.65 -2.25 -47.41 16 13 O -0.98 -49.39 16.89 -127.65 -2.16 -51.55 16 14 C -0.57 -19.33 5.85 71.98 0.42 -18.91 16 15 C -0.03 -1.41 1.10 -52.90 -0.06 -1.47 16 16 C -0.54 -31.01 7.54 25.60 0.19 -30.82 16 17 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 18 C 0.05 2.75 5.47 84.65 0.46 3.21 16 19 N -0.93 -59.56 13.96 21.45 0.30 -59.26 16 20 Si 0.90 40.92 25.41 68.60 1.74 42.67 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.19 -7.11 5.52 99.48 0.55 -6.56 16 24 C -0.16 -5.69 7.48 30.59 0.23 -5.47 16 25 C -0.17 -6.16 9.89 30.62 0.30 -5.86 16 26 C 0.10 2.11 5.97 86.73 0.52 2.62 16 27 C 0.04 1.06 9.06 83.54 0.76 1.82 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.13 1.09 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.44 7.04 -2.39 -0.02 1.42 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.13 4.02 6.18 -2.39 -0.01 4.00 16 37 H 0.16 3.70 7.95 -2.39 -0.02 3.68 16 38 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 39 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 40 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.12 3.31 8.09 -2.39 -0.02 3.29 16 42 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 43 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.56 7.46 -2.39 -0.02 1.55 16 45 H 0.16 4.23 7.42 -2.91 -0.02 4.21 16 Total: -1.00 -84.58 374.38 -0.10 -84.68 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.82 Total: 27.80 kcal Atomic # 6 Polarization: -60.50 SS G_CDS: 5.42 Total: -55.08 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.41 Total: -105.95 kcal Atomic # 8 Polarization: -94.55 SS G_CDS: -4.40 Total: -98.95 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.74 Total: 42.67 kcal Atomic # 16 Polarization: 105.10 SS G_CDS: -0.27 Total: 104.83 kcal Total: -84.58 -0.10 -84.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520969951.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.240 kcal (2) G-P(sol) polarization free energy of solvation -84.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds