Wall clock time and date at job start Tue Mar 31 2020 22:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29027 * 124.91974 * 2 1 4 4 C 1.31777 * 117.12580 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74889 * 180.02562 * 4 3 2 6 6 C 1.33639 * 114.49997 * 359.97438 * 4 3 2 7 7 C 1.50699 * 126.03611 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47610 * 89.99653 * 7 6 4 9 9 N 1.46496 * 109.47106 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99950 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99621 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00422 * 180.02562 * 10 9 8 13 13 C 1.47020 * 125.64486 * 0.02684 * 12 10 9 14 14 C 1.54325 * 107.26925 * 181.01160 * 13 12 10 15 15 C 1.55156 * 102.94334 * 22.19688 * 14 13 12 16 16 O 1.42898 * 111.00841 * 82.56640 * 15 14 13 17 17 C 1.50696 * 111.00380 * 206.38590 * 15 14 13 18 18 H 1.08004 * 120.00045 * 118.08712 * 17 15 14 19 19 C 1.37879 * 120.00055 * 298.08413 * 17 15 14 20 20 N 1.31512 * 119.99889 * 187.04965 * 19 17 15 21 21 Si 1.86802 * 119.99872 * 7.05477 * 19 17 15 22 22 H 1.48501 * 109.47240 * 84.71717 * 21 19 17 23 23 H 1.48503 * 109.46995 * 204.71816 * 21 19 17 24 24 H 1.48497 * 109.46968 * 324.71724 * 21 19 17 25 25 C 1.47417 * 125.64958 * 179.97438 * 12 10 9 26 26 S 1.70981 * 124.91281 * 180.31728 * 2 1 3 27 27 H 1.09001 * 109.47408 * 89.97405 * 1 2 3 28 28 H 1.08995 * 109.47187 * 209.97253 * 1 2 3 29 29 H 1.08994 * 109.46751 * 329.97483 * 1 2 3 30 30 H 1.09000 * 109.47164 * 269.99565 * 5 4 3 31 31 H 1.08998 * 109.47317 * 29.99503 * 5 4 3 32 32 H 1.08998 * 109.47396 * 149.99791 * 5 4 3 33 33 H 1.09007 * 109.47345 * 329.99603 * 7 6 4 34 34 H 1.09001 * 109.47457 * 209.99849 * 7 6 4 35 35 H 1.09001 * 109.46444 * 59.99841 * 8 7 6 36 36 H 1.08996 * 109.46790 * 299.99835 * 8 7 6 37 37 H 0.96997 * 120.00267 * 0.02562 * 9 8 7 38 38 H 1.09002 * 109.88305 * 61.60005 * 13 12 10 39 39 H 1.09002 * 109.88637 * 300.42928 * 13 12 10 40 40 H 1.09005 * 110.72028 * 140.55989 * 14 13 12 41 41 H 1.08994 * 110.72295 * 263.64958 * 14 13 12 42 42 H 0.96695 * 113.99756 * 179.97438 * 16 15 14 43 43 H 0.97008 * 119.99397 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.37035 * 37.07431 * 25 12 10 45 45 H 1.09003 * 110.46209 * 274.80338 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0244 0.0000 6 6 3.9354 -0.4007 -0.0004 7 6 5.3574 -0.8996 -0.0004 8 6 5.8388 -1.0682 1.4421 9 7 7.2210 -1.5537 1.4420 10 6 7.8571 -1.7763 2.6092 11 8 7.2836 -1.5746 3.6621 12 7 9.1289 -2.2225 2.6092 13 6 9.9373 -2.5061 1.4144 14 6 11.3105 -3.0154 1.9008 15 6 11.0040 -3.5272 3.3331 16 8 10.4649 -4.8502 3.3001 17 6 12.2339 -3.4696 4.2020 18 1 12.2442 -2.8444 5.0826 19 6 13.3460 -4.2152 3.8729 20 7 14.3663 -4.2746 4.7005 21 14 13.4034 -5.1409 2.2514 22 1 13.8660 -4.2274 1.1759 23 1 14.3432 -6.2849 2.3675 24 1 12.0466 -5.6465 1.9218 25 6 9.9400 -2.5058 3.8071 26 16 2.4856 -1.4021 -0.0078 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3632 0.8897 0.5142 30 1 4.7667 2.3012 -1.0276 31 1 4.0908 2.8787 0.5144 32 1 5.4434 1.7218 0.5133 33 1 5.9949 -0.1801 -0.5144 34 1 5.4057 -1.8597 -0.5142 35 1 5.2013 -1.7877 1.9559 36 1 5.7906 -0.1081 1.9558 37 1 7.6786 -1.7143 0.6019 38 1 10.0658 -1.5957 0.8291 39 1 9.4506 -3.2720 0.8106 40 1 11.6662 -3.8290 1.2685 41 1 12.0365 -2.2029 1.9258 42 1 10.2580 -5.2124 4.1724 43 1 15.1486 -4.7995 4.4690 44 1 9.3198 -2.9403 4.5911 45 1 10.4210 -1.5958 4.1656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591955073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:10 Heat of formation + Delta-G solvation = -30.646756 kcal Electronic energy + Delta-G solvation = -26745.644603 eV Core-core repulsion = 22890.158745 eV Total energy + Delta-G solvation = -3855.485858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.35675 -39.89298 -37.83912 -35.80641 -34.51512 -33.62651 -32.45577 -31.32459 -30.14564 -29.50088 -28.36624 -26.82255 -25.03488 -23.26701 -22.86406 -22.40913 -20.11589 -19.76329 -19.01829 -18.29729 -17.89595 -17.26060 -16.19394 -15.83666 -15.46401 -15.22952 -14.99085 -14.79111 -14.60698 -14.22072 -13.84669 -13.68983 -13.61460 -13.40148 -13.28214 -12.94174 -12.79784 -12.67162 -12.50116 -12.41894 -12.14772 -12.13145 -11.91791 -11.64454 -11.33726 -11.22833 -11.12348 -10.62251 -10.38504 -10.09844 -9.95825 -9.82998 -9.56202 -9.07546 -9.06105 -8.89221 -8.79942 -8.57271 -7.99453 -6.26179 -4.37628 0.33567 0.98602 1.40498 2.41688 2.87361 3.24385 3.37358 3.49542 3.53034 3.71911 4.15629 4.36485 4.54191 4.58767 4.64324 4.67998 4.94261 5.00128 5.01570 5.03231 5.12806 5.17362 5.29864 5.33346 5.38614 5.46506 5.51358 5.58867 5.67999 5.70397 5.75183 5.84206 5.99180 6.09210 6.44204 6.51582 6.54747 6.59649 6.63011 7.09337 7.28998 7.42448 7.46425 8.14783 8.25987 8.71490 8.86305 8.90030 9.36896 10.84237 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.002057 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.325636 B =13611.069625 C =13695.719861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 N -0.472 5.472 4 C 0.072 3.928 5 C -0.082 4.082 6 C -0.222 4.222 7 C -0.052 4.052 8 C 0.147 3.853 9 N -0.751 5.751 10 C 0.720 3.280 11 O -0.597 6.597 12 N -0.626 5.626 13 C 0.105 3.895 14 C -0.127 4.127 15 C 0.217 3.783 16 O -0.573 6.573 17 C -0.552 4.552 18 H 0.080 0.920 19 C 0.090 3.910 20 N -0.884 5.884 21 Si 0.876 3.124 22 H -0.282 1.282 23 H -0.299 1.299 24 H -0.232 1.232 25 C 0.112 3.888 26 S 0.124 5.876 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.395 0.605 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.367 0.633 43 H 0.267 0.733 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.568 7.382 -14.405 27.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.233 4.233 3 N -0.187 5.187 4 C -0.060 4.060 5 C -0.141 4.141 6 C -0.343 4.343 7 C -0.092 4.092 8 C 0.021 3.979 9 N -0.408 5.408 10 C 0.422 3.578 11 O -0.475 6.475 12 N -0.363 5.363 13 C -0.019 4.019 14 C -0.165 4.165 15 C 0.176 3.824 16 O -0.379 6.379 17 C -0.590 4.590 18 H 0.098 0.902 19 C -0.116 4.116 20 N -0.520 5.520 21 Si 0.704 3.296 22 H -0.209 1.209 23 H -0.227 1.227 24 H -0.156 1.156 25 C -0.010 4.010 26 S 0.380 5.620 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.229 0.771 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.215 0.785 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.338 7.009 -14.223 28.215 hybrid contribution 0.971 0.075 -0.669 1.181 sum -22.367 7.084 -14.891 27.789 Atomic orbital electron populations 1.20448 0.85128 1.04327 1.03870 1.26957 1.01738 0.91151 1.03441 1.66150 1.04476 1.31705 1.16379 1.20198 0.90218 0.94068 1.01521 1.20411 0.96024 0.94683 1.02975 1.25380 0.99349 0.95641 1.13925 1.20191 0.89065 1.02475 0.97480 1.21070 0.81630 1.00175 0.94991 1.45037 1.14680 1.73494 1.07554 1.15406 0.80244 0.78359 0.83786 1.90897 1.66330 1.59871 1.30446 1.47677 1.10907 1.68285 1.09408 1.21987 0.93153 0.98828 0.87883 1.22977 0.94582 1.00996 0.97927 1.20090 0.90589 0.79762 0.91947 1.86423 1.85524 1.31929 1.34069 1.21133 0.96301 1.29782 1.11775 0.90198 1.24946 0.94913 0.94781 0.96962 1.69937 1.06510 1.39742 1.35794 0.87056 0.79382 0.79487 0.83683 1.20891 1.22662 1.15555 1.22878 0.91980 0.99818 0.86355 1.84041 0.97423 1.12036 1.68485 0.89589 0.90015 0.89229 0.90570 0.90454 0.90366 0.88887 0.89771 0.91607 0.91359 0.77112 0.92554 0.92362 0.90783 0.89243 0.78546 0.92287 0.91307 0.91171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.46 36.01 0.38 -0.04 16 2 C 0.04 0.40 7.39 -13.46 -0.10 0.30 16 3 N -0.47 -5.19 10.53 -8.06 -0.08 -5.27 16 4 C 0.07 0.73 6.74 -84.23 -0.57 0.16 16 5 C -0.08 -0.66 9.82 36.00 0.35 -0.30 16 6 C -0.22 -2.08 5.84 -35.92 -0.21 -2.29 16 7 C -0.05 -0.42 5.26 -27.88 -0.15 -0.57 16 8 C 0.15 1.66 5.66 -4.04 -0.02 1.64 16 9 N -0.75 -9.75 5.52 -65.23 -0.36 -10.11 16 10 C 0.72 12.95 8.49 -86.92 -0.74 12.21 16 11 O -0.60 -12.96 16.60 5.29 0.09 -12.87 16 12 N -0.63 -11.40 3.33 -176.24 -0.59 -11.98 16 13 C 0.10 1.67 6.15 -3.06 -0.02 1.65 16 14 C -0.13 -2.47 4.63 -24.90 -0.12 -2.59 16 15 C 0.22 4.75 0.70 -89.62 -0.06 4.69 16 16 O -0.57 -12.50 10.83 -35.23 -0.38 -12.89 16 17 C -0.55 -14.38 8.83 -34.44 -0.30 -14.68 16 18 H 0.08 2.27 8.03 -52.48 -0.42 1.84 16 19 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 20 N -0.88 -25.63 13.96 55.43 0.77 -24.86 16 21 Si 0.88 20.59 23.98 -169.99 -4.08 16.51 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.23 -5.36 5.43 56.52 0.31 -5.05 16 25 C 0.11 2.31 6.08 -2.53 -0.02 2.29 16 26 S 0.12 1.05 23.18 -107.50 -2.49 -1.44 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.58 7.18 -51.93 -0.37 0.21 16 33 H 0.09 0.62 7.43 -51.93 -0.39 0.24 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.84 7.97 -51.93 -0.41 0.43 16 37 H 0.40 4.11 7.46 -40.82 -0.30 3.80 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.47 4.80 -51.93 -0.25 1.22 16 41 H 0.09 1.72 8.04 -51.93 -0.42 1.31 16 42 H 0.37 7.19 9.06 45.56 0.41 7.61 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 45 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -33.92 376.72 -9.13 -43.05 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.02 Total: 9.38 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.67 Total: 4.80 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.26 Total: -52.23 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.29 Total: -25.76 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.08 Total: 16.51 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.92 -9.13 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591955073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.408 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds