Wall clock time and date at job start Tue Mar 31 2020 22:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29027 * 124.91974 * 2 1 4 4 C 1.31777 * 117.12580 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74889 * 180.02562 * 4 3 2 6 6 C 1.33639 * 114.49997 * 359.97438 * 4 3 2 7 7 C 1.50699 * 126.03611 * 180.02562 * 6 4 3 8 8 C 1.53004 * 109.47610 * 89.99653 * 7 6 4 9 9 N 1.46496 * 109.47106 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99950 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99621 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00422 * 180.02562 * 10 9 8 13 13 C 1.47020 * 125.64486 * 0.02684 * 12 10 9 14 14 C 1.54325 * 107.26925 * 181.01160 * 13 12 10 15 15 C 1.55156 * 102.94334 * 22.19688 * 14 13 12 16 16 O 1.42898 * 111.00841 * 82.56640 * 15 14 13 17 17 C 1.50696 * 111.00380 * 206.38590 * 15 14 13 18 18 H 1.08004 * 120.00045 * 118.08712 * 17 15 14 19 19 C 1.37879 * 120.00055 * 298.08413 * 17 15 14 20 20 N 1.31512 * 119.99889 * 187.04965 * 19 17 15 21 21 Si 1.86802 * 119.99872 * 7.05477 * 19 17 15 22 22 H 1.48501 * 109.47240 * 84.71717 * 21 19 17 23 23 H 1.48503 * 109.46995 * 204.71816 * 21 19 17 24 24 H 1.48497 * 109.46968 * 324.71724 * 21 19 17 25 25 C 1.47417 * 125.64958 * 179.97438 * 12 10 9 26 26 S 1.70981 * 124.91281 * 180.31728 * 2 1 3 27 27 H 1.09001 * 109.47408 * 89.97405 * 1 2 3 28 28 H 1.08995 * 109.47187 * 209.97253 * 1 2 3 29 29 H 1.08994 * 109.46751 * 329.97483 * 1 2 3 30 30 H 1.09000 * 109.47164 * 269.99565 * 5 4 3 31 31 H 1.08998 * 109.47317 * 29.99503 * 5 4 3 32 32 H 1.08998 * 109.47396 * 149.99791 * 5 4 3 33 33 H 1.09007 * 109.47345 * 329.99603 * 7 6 4 34 34 H 1.09001 * 109.47457 * 209.99849 * 7 6 4 35 35 H 1.09001 * 109.46444 * 59.99841 * 8 7 6 36 36 H 1.08996 * 109.46790 * 299.99835 * 8 7 6 37 37 H 0.96997 * 120.00267 * 0.02562 * 9 8 7 38 38 H 1.09002 * 109.88305 * 61.60005 * 13 12 10 39 39 H 1.09002 * 109.88637 * 300.42928 * 13 12 10 40 40 H 1.09005 * 110.72028 * 140.55989 * 14 13 12 41 41 H 1.08994 * 110.72295 * 263.64958 * 14 13 12 42 42 H 0.96695 * 113.99756 * 179.97438 * 16 15 14 43 43 H 0.97008 * 119.99397 * 179.97438 * 20 19 17 44 44 H 1.08999 * 110.37035 * 37.07431 * 25 12 10 45 45 H 1.09003 * 110.46209 * 274.80338 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5308 2.0244 0.0000 6 6 3.9354 -0.4007 -0.0004 7 6 5.3574 -0.8996 -0.0004 8 6 5.8388 -1.0682 1.4421 9 7 7.2210 -1.5537 1.4420 10 6 7.8571 -1.7763 2.6092 11 8 7.2836 -1.5746 3.6621 12 7 9.1289 -2.2225 2.6092 13 6 9.9373 -2.5061 1.4144 14 6 11.3105 -3.0154 1.9008 15 6 11.0040 -3.5272 3.3331 16 8 10.4649 -4.8502 3.3001 17 6 12.2339 -3.4696 4.2020 18 1 12.2442 -2.8444 5.0826 19 6 13.3460 -4.2152 3.8729 20 7 14.3663 -4.2746 4.7005 21 14 13.4034 -5.1409 2.2514 22 1 13.8660 -4.2274 1.1759 23 1 14.3432 -6.2849 2.3675 24 1 12.0466 -5.6465 1.9218 25 6 9.9400 -2.5058 3.8071 26 16 2.4856 -1.4021 -0.0078 27 1 -0.3634 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5134 29 1 -0.3632 0.8897 0.5142 30 1 4.7667 2.3012 -1.0276 31 1 4.0908 2.8787 0.5144 32 1 5.4434 1.7218 0.5133 33 1 5.9949 -0.1801 -0.5144 34 1 5.4057 -1.8597 -0.5142 35 1 5.2013 -1.7877 1.9559 36 1 5.7906 -0.1081 1.9558 37 1 7.6786 -1.7143 0.6019 38 1 10.0658 -1.5957 0.8291 39 1 9.4506 -3.2720 0.8106 40 1 11.6662 -3.8290 1.2685 41 1 12.0365 -2.2029 1.9258 42 1 10.2580 -5.2124 4.1724 43 1 15.1486 -4.7995 4.4690 44 1 9.3198 -2.9403 4.5911 45 1 10.4210 -1.5958 4.1656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591955073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:10 Heat of formation + Delta-G solvation = -57.114976 kcal Electronic energy + Delta-G solvation = -26746.792351 eV Core-core repulsion = 22890.158745 eV Total energy + Delta-G solvation = -3856.633606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.38982 -40.95166 -39.36591 -36.82496 -36.13721 -34.50290 -34.47343 -32.35776 -31.43935 -30.08613 -29.92342 -27.90458 -26.59895 -24.29662 -23.77466 -23.43325 -21.64941 -21.22498 -19.91913 -19.39426 -18.95438 -18.83051 -17.43666 -17.08484 -16.81748 -16.52795 -16.20324 -16.05078 -15.64858 -15.46963 -15.05969 -14.83071 -14.68363 -14.42909 -14.21721 -14.16870 -14.04731 -13.78498 -13.42534 -13.35778 -13.15220 -13.09354 -12.95911 -12.81898 -12.74528 -12.66858 -12.36941 -12.19454 -11.93607 -11.80026 -11.37595 -10.98726 -10.75245 -10.62790 -10.41722 -10.27514 -10.22912 -9.53991 -9.41841 -8.35579 -6.50850 -0.33032 0.35515 0.74380 1.38737 1.47810 1.55691 1.67073 1.77072 2.10310 2.40296 2.97082 3.00416 3.16712 3.54972 3.79126 3.88301 3.89452 3.94871 4.04688 4.06793 4.22672 4.29307 4.44862 4.48557 4.54666 4.59992 4.64437 4.73479 4.77257 4.81410 4.87759 4.89350 4.96481 4.99713 5.09993 5.10638 5.15433 5.36863 5.42050 5.43467 5.51972 6.06673 6.09475 6.60311 6.76083 6.97571 7.12454 7.29529 7.51537 8.78503 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.002057 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.325636 B =13611.069625 C =13695.719861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.040 3.960 3 N -0.504 5.504 4 C 0.057 3.943 5 C -0.080 4.080 6 C -0.235 4.235 7 C -0.039 4.039 8 C 0.150 3.850 9 N -0.728 5.728 10 C 0.716 3.284 11 O -0.641 6.641 12 N -0.629 5.629 13 C 0.109 3.891 14 C -0.130 4.130 15 C 0.215 3.785 16 O -0.574 6.574 17 C -0.553 4.553 18 H 0.038 0.962 19 C 0.037 3.963 20 N -0.934 5.934 21 Si 0.941 3.059 22 H -0.262 1.262 23 H -0.310 1.310 24 H -0.220 1.220 25 C 0.120 3.880 26 S 0.135 5.865 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.413 0.587 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.375 0.625 43 H 0.268 0.732 44 H 0.054 0.946 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.980 7.124 -17.868 30.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.238 4.238 3 N -0.221 5.221 4 C -0.075 4.075 5 C -0.140 4.140 6 C -0.356 4.356 7 C -0.079 4.079 8 C 0.025 3.975 9 N -0.385 5.385 10 C 0.418 3.582 11 O -0.523 6.523 12 N -0.365 5.365 13 C -0.013 4.013 14 C -0.168 4.168 15 C 0.174 3.826 16 O -0.381 6.381 17 C -0.590 4.590 18 H 0.057 0.943 19 C -0.164 4.164 20 N -0.572 5.572 21 Si 0.766 3.234 22 H -0.187 1.187 23 H -0.238 1.238 24 H -0.143 1.143 25 C -0.004 4.004 26 S 0.392 5.608 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.118 0.882 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.250 0.750 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.223 0.777 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.773 6.762 -17.748 31.216 hybrid contribution 1.324 0.192 0.530 1.438 sum -23.450 6.954 -17.218 29.912 Atomic orbital electron populations 1.20620 0.83009 1.05169 1.05115 1.27564 1.03155 0.90971 1.02071 1.66206 1.05129 1.32807 1.17922 1.20550 0.90442 0.94992 1.01530 1.20454 0.95744 0.93946 1.03815 1.25524 1.00082 0.95626 1.14365 1.20126 0.88598 1.03925 0.95255 1.21102 0.80348 0.98944 0.97133 1.44834 1.14974 1.71986 1.06690 1.15587 0.80005 0.78179 0.84450 1.90870 1.67271 1.61661 1.32528 1.47585 1.11173 1.68505 1.09234 1.22122 0.90682 1.01369 0.87092 1.22940 0.96932 1.01079 0.95820 1.19971 0.89092 0.80166 0.93328 1.86379 1.85290 1.31718 1.34743 1.21343 0.98189 1.28443 1.11070 0.94341 1.25783 0.94417 0.95839 1.00330 1.70075 1.07533 1.41525 1.38066 0.86062 0.79526 0.78009 0.79840 1.18735 1.23801 1.14301 1.22536 0.91799 0.98842 0.87242 1.83948 0.97103 1.11648 1.68124 0.88026 0.88308 0.89219 0.89225 0.91073 0.89807 0.86813 0.88192 0.93203 0.92501 0.75032 0.88600 0.90004 0.90450 0.89391 0.77731 0.92278 0.92790 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.46 71.24 0.75 0.02 16 2 C 0.04 0.66 7.39 88.52 0.65 1.32 16 3 N -0.50 -10.64 10.53 -179.40 -1.89 -12.53 16 4 C 0.06 1.08 6.74 41.52 0.28 1.36 16 5 C -0.08 -1.18 9.82 71.24 0.70 -0.48 16 6 C -0.23 -3.96 5.84 24.64 0.14 -3.82 16 7 C -0.04 -0.52 5.26 29.85 0.16 -0.36 16 8 C 0.15 3.09 5.66 86.38 0.49 3.58 16 9 N -0.73 -16.72 5.52 -478.54 -2.64 -19.36 16 10 C 0.72 24.47 8.49 179.05 1.52 25.99 16 11 O -0.64 -27.74 16.60 -3.99 -0.07 -27.81 16 12 N -0.63 -21.54 3.33 -829.76 -2.76 -24.30 16 13 C 0.11 3.02 6.15 86.73 0.53 3.55 16 14 C -0.13 -4.67 4.63 31.78 0.15 -4.52 16 15 C 0.22 9.25 0.70 -10.15 -0.01 9.24 16 16 O -0.57 -24.12 10.83 -148.98 -1.61 -25.73 16 17 C -0.55 -29.37 8.83 25.60 0.23 -29.14 16 18 H 0.04 2.30 8.03 -2.91 -0.02 2.28 16 19 C 0.04 2.02 5.47 84.66 0.46 2.48 16 20 N -0.93 -55.60 13.96 21.45 0.30 -55.30 16 21 Si 0.94 41.83 23.98 68.60 1.65 43.48 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 23 H -0.31 -14.25 7.11 99.48 0.71 -13.54 16 24 H -0.22 -9.30 5.43 99.48 0.54 -8.76 16 25 C 0.12 4.91 6.08 86.86 0.53 5.44 16 26 S 0.14 2.08 23.18 -56.49 -1.31 0.77 16 27 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.10 7.18 -2.39 -0.02 1.08 16 33 H 0.11 1.07 7.43 -2.38 -0.02 1.06 16 34 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.33 7.97 -2.39 -0.02 1.31 16 37 H 0.41 6.67 7.46 -92.71 -0.69 5.98 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 2.75 4.80 -2.38 -0.01 2.74 16 41 H 0.09 3.17 8.04 -2.39 -0.02 3.15 16 42 H 0.37 14.45 9.06 -74.06 -0.67 13.78 16 43 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 44 H 0.05 2.34 8.04 -2.39 -0.02 2.32 16 45 H 0.06 2.48 8.03 -2.39 -0.02 2.46 16 Total: -1.00 -75.65 376.72 -2.25 -77.90 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.50 Total: 28.24 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 6.58 Total: 14.65 kcal Atomic # 7 Polarization: -104.51 SS G_CDS: -6.99 Total: -111.49 kcal Atomic # 8 Polarization: -51.87 SS G_CDS: -1.68 Total: -53.55 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.65 Total: 43.48 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -1.31 Total: 0.77 kcal Total: -75.65 -2.25 -77.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591955073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.790 kcal (2) G-P(sol) polarization free energy of solvation -75.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds