Wall clock time and date at job start Tue Mar 31 2020 22:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.92154 * 2 1 4 4 C 1.31784 * 117.12660 * 179.67714 * 3 2 1 5 5 C 1.50697 * 122.74829 * 180.33318 * 4 3 2 6 6 C 1.33634 * 114.49867 * 0.52244 * 4 3 2 7 7 C 1.50700 * 126.03574 * 179.78577 * 6 4 3 8 8 C 1.53000 * 109.46943 * 89.71507 * 7 6 4 9 9 N 1.46499 * 109.47079 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00161 * 180.02562 * 9 8 7 11 11 O 1.21593 * 119.99978 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00278 * 180.02562 * 10 9 8 13 13 C 1.47428 * 125.64932 * 0.02562 * 12 10 9 14 14 C 1.54905 * 104.92788 * 204.15369 * 13 12 10 15 15 C 1.55150 * 101.58367 * 322.93561 * 14 13 12 16 16 O 1.42903 * 110.71904 * 277.13578 * 15 14 13 17 17 C 1.50700 * 110.72088 * 154.04582 * 15 14 13 18 18 H 1.07999 * 119.99987 * 268.65132 * 17 15 14 19 19 C 1.37877 * 120.00383 * 88.64373 * 17 15 14 20 20 N 1.31515 * 120.00249 * 173.92523 * 19 17 15 21 21 Si 1.86797 * 120.00003 * 353.93492 * 19 17 15 22 22 H 1.48503 * 109.47515 * 86.06405 * 21 19 17 23 23 H 1.48502 * 109.47066 * 206.06475 * 21 19 17 24 24 H 1.48501 * 109.47146 * 326.06322 * 21 19 17 25 25 C 1.47290 * 125.79683 * 180.02562 * 12 10 9 26 26 S 1.70982 * 124.91525 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47107 * 270.03978 * 1 2 3 28 28 H 1.08995 * 109.46924 * 30.04545 * 1 2 3 29 29 H 1.09004 * 109.47254 * 150.04015 * 1 2 3 30 30 H 1.09007 * 109.47416 * 270.20590 * 5 4 3 31 31 H 1.09006 * 109.47444 * 30.20349 * 5 4 3 32 32 H 1.08999 * 109.47184 * 150.20537 * 5 4 3 33 33 H 1.08998 * 109.47271 * 329.72092 * 7 6 4 34 34 H 1.08997 * 109.47139 * 209.71614 * 7 6 4 35 35 H 1.09007 * 109.47247 * 60.00225 * 8 7 6 36 36 H 1.08997 * 109.47291 * 300.00014 * 8 7 6 37 37 H 0.97001 * 120.00434 * 0.02562 * 9 8 7 38 38 H 1.09005 * 110.36346 * 85.25939 * 13 12 10 39 39 H 1.08995 * 110.36606 * 323.05140 * 13 12 10 40 40 H 1.09002 * 111.00204 * 81.01378 * 14 13 12 41 41 H 1.09001 * 111.00240 * 204.85797 * 14 13 12 42 42 H 0.96707 * 113.99611 * 174.37208 * 16 15 14 43 43 H 0.96996 * 120.00053 * 180.02562 * 20 19 17 44 44 H 1.09008 * 109.85554 * 59.50243 * 25 12 10 45 45 H 1.09000 * 110.00452 * 298.43440 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5513 0.8792 0.0066 5 6 4.5308 2.0244 0.0148 6 6 3.9354 -0.4007 0.0014 7 6 5.3575 -0.8996 0.0023 8 6 5.8378 -1.0684 1.4451 9 7 7.2200 -1.5540 1.4460 10 6 7.8549 -1.7777 2.6136 11 8 7.2807 -1.5761 3.6663 12 7 9.1266 -2.2238 2.6144 13 6 9.9386 -2.5071 1.4170 14 6 11.0021 -3.5299 1.8888 15 6 11.3105 -3.0202 3.3213 16 8 12.2623 -1.9548 3.2849 17 6 11.8062 -4.1455 4.1925 18 1 11.1065 -4.7235 4.7781 19 6 13.1528 -4.4374 4.2420 20 7 13.5997 -5.3379 5.0900 21 14 14.3424 -3.5538 3.1048 22 1 14.7652 -2.2740 3.7283 23 1 15.5341 -4.4092 2.8737 24 1 13.6738 -3.2757 1.8083 25 6 9.9384 -2.5102 3.8096 26 16 2.4857 -1.4021 0.0006 27 1 -0.3633 0.0007 1.0276 28 1 -0.3633 0.8895 -0.5145 29 1 -0.3634 -0.8904 -0.5132 30 1 4.7698 2.3055 -1.0109 31 1 4.0893 2.8765 0.5316 32 1 5.4419 1.7195 0.5296 33 1 5.9953 -0.1800 -0.5110 34 1 5.4060 -1.8596 -0.5115 35 1 5.2000 -1.7881 1.9585 36 1 5.7892 -0.1084 1.9590 37 1 7.6782 -1.7144 0.6063 38 1 10.4200 -1.5963 1.0609 39 1 9.3185 -2.9395 0.6318 40 1 10.5900 -4.5387 1.9133 41 1 11.8909 -3.4878 1.2592 42 1 12.4250 -1.5433 4.1447 43 1 14.5471 -5.5429 5.1250 44 1 9.4515 -3.2763 4.4131 45 1 10.0685 -1.6021 4.3983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591955074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:13 Heat of formation + Delta-G solvation = -36.142322 kcal Electronic energy + Delta-G solvation = -26679.246050 eV Core-core repulsion = 22823.521887 eV Total energy + Delta-G solvation = -3855.724163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.36108 -39.90089 -37.92970 -35.84120 -34.74980 -33.64540 -32.38802 -31.33357 -30.06622 -29.50023 -28.38251 -26.81599 -25.04579 -23.27859 -22.87709 -22.41953 -20.10134 -19.72040 -19.00699 -18.30149 -17.90848 -17.48034 -16.19775 -15.79326 -15.45618 -15.32743 -15.03943 -14.79634 -14.59755 -14.30338 -13.83654 -13.66940 -13.66441 -13.44287 -13.28538 -12.83325 -12.77406 -12.64768 -12.47463 -12.39276 -12.15093 -12.11424 -11.95915 -11.64495 -11.50929 -11.25746 -11.10355 -10.54700 -10.35583 -10.18069 -9.96087 -9.83008 -9.56516 -9.24374 -9.07847 -8.89374 -8.67605 -8.56507 -8.08047 -6.21551 -4.33792 0.33352 0.98271 1.40163 2.41386 2.85075 3.41959 3.47992 3.49100 3.63188 3.71552 4.13731 4.45226 4.53583 4.58146 4.63630 4.67156 4.93273 4.99559 5.00251 5.02032 5.12199 5.16714 5.28094 5.29452 5.38126 5.46042 5.57981 5.58712 5.68365 5.69725 5.76823 5.84989 5.98770 6.08240 6.47908 6.51151 6.53347 6.63490 6.73558 7.04671 7.27570 7.42152 7.45120 8.10075 8.24602 8.61271 8.80202 8.85410 9.39068 10.87425 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031776 B = 0.002012 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.952322 B =13912.966706 C =14154.310722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.045 3.955 3 N -0.472 5.472 4 C 0.072 3.928 5 C -0.082 4.082 6 C -0.222 4.222 7 C -0.052 4.052 8 C 0.146 3.854 9 N -0.751 5.751 10 C 0.719 3.281 11 O -0.596 6.596 12 N -0.629 5.629 13 C 0.099 3.901 14 C -0.121 4.121 15 C 0.219 3.781 16 O -0.564 6.564 17 C -0.553 4.553 18 H 0.081 0.919 19 C 0.074 3.926 20 N -0.887 5.887 21 Si 0.946 3.054 22 H -0.291 1.291 23 H -0.324 1.324 24 H -0.268 1.268 25 C 0.112 3.888 26 S 0.124 5.876 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.395 0.605 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.373 0.627 43 H 0.267 0.733 44 H 0.072 0.928 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.899 10.194 -15.068 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.233 4.233 3 N -0.187 5.187 4 C -0.060 4.060 5 C -0.141 4.141 6 C -0.343 4.343 7 C -0.092 4.092 8 C 0.021 3.979 9 N -0.408 5.408 10 C 0.421 3.579 11 O -0.475 6.475 12 N -0.366 5.366 13 C -0.024 4.024 14 C -0.159 4.159 15 C 0.178 3.822 16 O -0.372 6.372 17 C -0.590 4.590 18 H 0.099 0.901 19 C -0.131 4.131 20 N -0.522 5.522 21 Si 0.781 3.219 22 H -0.218 1.218 23 H -0.256 1.256 24 H -0.194 1.194 25 C -0.010 4.010 26 S 0.381 5.619 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.221 0.779 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.778 9.537 -14.811 28.011 hybrid contribution 1.367 1.052 -0.315 1.754 sum -20.411 10.589 -15.126 27.523 Atomic orbital electron populations 1.20451 0.85123 1.04186 1.04020 1.26959 1.01742 0.91156 1.03412 1.66150 1.04474 1.31711 1.16400 1.20196 0.90217 0.94072 1.01508 1.20413 0.96020 0.94683 1.02980 1.25379 0.99350 0.95648 1.13957 1.20186 0.89074 1.02483 0.97446 1.21077 0.81618 1.00185 0.95011 1.45049 1.14714 1.73515 1.07543 1.15412 0.80291 0.78404 0.83795 1.90904 1.66316 1.59752 1.30480 1.47761 1.10865 1.68421 1.09536 1.22356 0.93299 0.99248 0.87503 1.23110 0.97320 0.97816 0.97652 1.20101 0.83490 0.85477 0.93111 1.86120 1.62653 1.51847 1.36598 1.21180 0.94088 1.15965 1.27781 0.90116 1.25120 0.98723 0.94485 0.94752 1.69964 1.15198 1.32318 1.34675 0.85779 0.77389 0.76994 0.81723 1.21802 1.25563 1.19403 1.22778 0.92297 0.99849 0.86122 1.84040 0.97404 1.12018 1.68479 0.89475 0.89273 0.90067 0.90566 0.90461 0.90377 0.88884 0.89754 0.91583 0.91380 0.77085 0.91869 0.92309 0.89685 0.89858 0.77851 0.92367 0.90958 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.46 36.01 0.38 -0.04 16 2 C 0.05 0.40 7.39 -13.46 -0.10 0.30 16 3 N -0.47 -5.17 10.53 -8.06 -0.08 -5.25 16 4 C 0.07 0.73 6.74 -84.23 -0.57 0.16 16 5 C -0.08 -0.66 9.82 36.00 0.35 -0.30 16 6 C -0.22 -2.06 5.84 -35.92 -0.21 -2.27 16 7 C -0.05 -0.41 5.25 -27.88 -0.15 -0.56 16 8 C 0.15 1.64 5.66 -4.04 -0.02 1.62 16 9 N -0.75 -9.59 5.52 -65.22 -0.36 -9.95 16 10 C 0.72 12.82 8.49 -86.92 -0.74 12.08 16 11 O -0.60 -12.95 16.68 5.28 0.09 -12.87 16 12 N -0.63 -11.29 3.34 -176.02 -0.59 -11.87 16 13 C 0.10 1.53 6.56 -2.53 -0.02 1.51 16 14 C -0.12 -2.28 5.87 -24.59 -0.14 -2.43 16 15 C 0.22 4.70 0.68 -89.95 -0.06 4.64 16 16 O -0.56 -11.77 8.75 -35.23 -0.31 -12.08 16 17 C -0.55 -14.40 8.81 -34.44 -0.30 -14.70 16 18 H 0.08 2.32 7.81 -52.49 -0.41 1.91 16 19 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 20 N -0.89 -25.89 13.96 55.43 0.77 -25.12 16 21 Si 0.95 22.52 24.83 -169.99 -4.22 18.30 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.32 -7.97 7.11 56.52 0.40 -7.57 16 24 H -0.27 -6.12 5.19 56.52 0.29 -5.83 16 25 C 0.11 2.29 6.24 -2.92 -0.02 2.27 16 26 S 0.12 1.05 23.18 -107.50 -2.49 -1.44 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.58 7.15 -51.93 -0.37 0.21 16 33 H 0.09 0.61 7.44 -51.93 -0.39 0.23 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.83 7.94 -51.93 -0.41 0.42 16 37 H 0.39 3.98 6.95 -40.82 -0.28 3.70 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.72 7.29 -51.93 -0.38 0.34 16 40 H 0.08 1.62 8.04 -51.93 -0.42 1.20 16 41 H 0.08 1.60 6.24 -51.93 -0.32 1.27 16 42 H 0.37 6.98 8.98 45.56 0.41 7.39 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.07 1.60 7.66 -51.92 -0.40 1.20 16 45 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -34.12 376.45 -9.23 -43.34 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.01 Total: 7.07 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.70 Total: 4.21 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: -0.26 Total: -52.19 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.22 Total: -24.95 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.22 Total: 18.30 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.49 Total: -1.44 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.12 -9.23 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591955074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.201 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds