Wall clock time and date at job start Tue Mar 31 2020 22:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29024 * 124.92154 * 2 1 4 4 C 1.31784 * 117.12660 * 179.67714 * 3 2 1 5 5 C 1.50697 * 122.74829 * 180.33318 * 4 3 2 6 6 C 1.33634 * 114.49867 * 0.52244 * 4 3 2 7 7 C 1.50700 * 126.03574 * 179.78577 * 6 4 3 8 8 C 1.53000 * 109.46943 * 89.71507 * 7 6 4 9 9 N 1.46499 * 109.47079 * 179.97438 * 8 7 6 10 10 C 1.34779 * 120.00161 * 180.02562 * 9 8 7 11 11 O 1.21593 * 119.99978 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00278 * 180.02562 * 10 9 8 13 13 C 1.47428 * 125.64932 * 0.02562 * 12 10 9 14 14 C 1.54905 * 104.92788 * 204.15369 * 13 12 10 15 15 C 1.55150 * 101.58367 * 322.93561 * 14 13 12 16 16 O 1.42903 * 110.71904 * 277.13578 * 15 14 13 17 17 C 1.50700 * 110.72088 * 154.04582 * 15 14 13 18 18 H 1.07999 * 119.99987 * 268.65132 * 17 15 14 19 19 C 1.37877 * 120.00383 * 88.64373 * 17 15 14 20 20 N 1.31515 * 120.00249 * 173.92523 * 19 17 15 21 21 Si 1.86797 * 120.00003 * 353.93492 * 19 17 15 22 22 H 1.48503 * 109.47515 * 86.06405 * 21 19 17 23 23 H 1.48502 * 109.47066 * 206.06475 * 21 19 17 24 24 H 1.48501 * 109.47146 * 326.06322 * 21 19 17 25 25 C 1.47290 * 125.79683 * 180.02562 * 12 10 9 26 26 S 1.70982 * 124.91525 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.47107 * 270.03978 * 1 2 3 28 28 H 1.08995 * 109.46924 * 30.04545 * 1 2 3 29 29 H 1.09004 * 109.47254 * 150.04015 * 1 2 3 30 30 H 1.09007 * 109.47416 * 270.20590 * 5 4 3 31 31 H 1.09006 * 109.47444 * 30.20349 * 5 4 3 32 32 H 1.08999 * 109.47184 * 150.20537 * 5 4 3 33 33 H 1.08998 * 109.47271 * 329.72092 * 7 6 4 34 34 H 1.08997 * 109.47139 * 209.71614 * 7 6 4 35 35 H 1.09007 * 109.47247 * 60.00225 * 8 7 6 36 36 H 1.08997 * 109.47291 * 300.00014 * 8 7 6 37 37 H 0.97001 * 120.00434 * 0.02562 * 9 8 7 38 38 H 1.09005 * 110.36346 * 85.25939 * 13 12 10 39 39 H 1.08995 * 110.36606 * 323.05140 * 13 12 10 40 40 H 1.09002 * 111.00204 * 81.01378 * 14 13 12 41 41 H 1.09001 * 111.00240 * 204.85797 * 14 13 12 42 42 H 0.96707 * 113.99611 * 174.37208 * 16 15 14 43 43 H 0.96996 * 120.00053 * 180.02562 * 20 19 17 44 44 H 1.09008 * 109.85554 * 59.50243 * 25 12 10 45 45 H 1.09000 * 110.00452 * 298.43440 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5513 0.8792 0.0066 5 6 4.5308 2.0244 0.0148 6 6 3.9354 -0.4007 0.0014 7 6 5.3575 -0.8996 0.0023 8 6 5.8378 -1.0684 1.4451 9 7 7.2200 -1.5540 1.4460 10 6 7.8549 -1.7777 2.6136 11 8 7.2807 -1.5761 3.6663 12 7 9.1266 -2.2238 2.6144 13 6 9.9386 -2.5071 1.4170 14 6 11.0021 -3.5299 1.8888 15 6 11.3105 -3.0202 3.3213 16 8 12.2623 -1.9548 3.2849 17 6 11.8062 -4.1455 4.1925 18 1 11.1065 -4.7235 4.7781 19 6 13.1528 -4.4374 4.2420 20 7 13.5997 -5.3379 5.0900 21 14 14.3424 -3.5538 3.1048 22 1 14.7652 -2.2740 3.7283 23 1 15.5341 -4.4092 2.8737 24 1 13.6738 -3.2757 1.8083 25 6 9.9384 -2.5102 3.8096 26 16 2.4857 -1.4021 0.0006 27 1 -0.3633 0.0007 1.0276 28 1 -0.3633 0.8895 -0.5145 29 1 -0.3634 -0.8904 -0.5132 30 1 4.7698 2.3055 -1.0109 31 1 4.0893 2.8765 0.5316 32 1 5.4419 1.7195 0.5296 33 1 5.9953 -0.1800 -0.5110 34 1 5.4060 -1.8596 -0.5115 35 1 5.2000 -1.7881 1.9585 36 1 5.7892 -0.1084 1.9590 37 1 7.6782 -1.7144 0.6063 38 1 10.4200 -1.5963 1.0609 39 1 9.3185 -2.9395 0.6318 40 1 10.5900 -4.5387 1.9133 41 1 11.8909 -3.4878 1.2592 42 1 12.4250 -1.5433 4.1447 43 1 14.5471 -5.5429 5.1250 44 1 9.4515 -3.2763 4.4131 45 1 10.0685 -1.6021 4.3983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591955074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:12 Heat of formation + Delta-G solvation = -62.363871 kcal Electronic energy + Delta-G solvation = -26680.383102 eV Core-core repulsion = 22823.521887 eV Total energy + Delta-G solvation = -3856.861215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39497 -40.95278 -39.45860 -36.85758 -36.32825 -34.49758 -34.43908 -32.32511 -31.36650 -30.08590 -29.92860 -27.89886 -26.62748 -24.30686 -23.77202 -23.43683 -21.57570 -21.18602 -19.89778 -19.53617 -18.95328 -18.91803 -17.46999 -17.02270 -16.95272 -16.58279 -16.23537 -16.04182 -15.66694 -15.39130 -15.16414 -14.77924 -14.55563 -14.45435 -14.18202 -14.03581 -14.01429 -13.92276 -13.45729 -13.32966 -13.24540 -13.16039 -12.95696 -12.77613 -12.72696 -12.67670 -12.30716 -12.20900 -11.93534 -11.84441 -11.36481 -11.20824 -10.62944 -10.62600 -10.40687 -10.31233 -10.23208 -9.54205 -9.47588 -8.32859 -6.47972 -0.33031 0.35437 0.74334 1.52370 1.54486 1.55694 1.75050 1.77504 2.09103 2.46247 2.96765 2.99126 3.16609 3.50916 3.81022 3.88235 3.88563 3.94672 4.05581 4.08101 4.28696 4.32427 4.44758 4.48624 4.54831 4.61271 4.64015 4.73360 4.77092 4.82533 4.88309 4.89511 4.98604 4.99651 5.10516 5.15223 5.22561 5.36695 5.41019 5.43310 5.53767 6.05184 6.07463 6.59175 6.75993 6.93705 6.98264 7.29959 7.50769 8.80350 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031776 B = 0.002012 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.952322 B =13912.966706 C =14154.310722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.040 3.960 3 N -0.505 5.505 4 C 0.056 3.944 5 C -0.080 4.080 6 C -0.235 4.235 7 C -0.039 4.039 8 C 0.149 3.851 9 N -0.727 5.727 10 C 0.715 3.285 11 O -0.642 6.642 12 N -0.631 5.631 13 C 0.107 3.893 14 C -0.121 4.121 15 C 0.219 3.781 16 O -0.560 6.560 17 C -0.552 4.552 18 H 0.036 0.964 19 C 0.023 3.977 20 N -0.938 5.938 21 Si 1.008 2.992 22 H -0.282 1.282 23 H -0.336 1.336 24 H -0.246 1.246 25 C 0.120 3.880 26 S 0.135 5.865 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.413 0.587 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.382 0.618 43 H 0.267 0.733 44 H 0.042 0.958 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.421 11.571 -18.345 30.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.238 4.238 3 N -0.221 5.221 4 C -0.075 4.075 5 C -0.140 4.140 6 C -0.356 4.356 7 C -0.079 4.079 8 C 0.024 3.976 9 N -0.385 5.385 10 C 0.417 3.583 11 O -0.524 6.524 12 N -0.368 5.368 13 C -0.015 4.015 14 C -0.159 4.159 15 C 0.178 3.822 16 O -0.369 6.369 17 C -0.589 4.589 18 H 0.054 0.946 19 C -0.177 4.177 20 N -0.576 5.576 21 Si 0.840 3.160 22 H -0.209 1.209 23 H -0.268 1.268 24 H -0.170 1.170 25 C -0.004 4.004 26 S 0.392 5.608 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.250 0.750 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.232 0.768 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.327 10.930 -18.153 30.781 hybrid contribution 1.389 0.590 0.793 1.705 sum -20.938 11.520 -17.361 29.538 Atomic orbital electron populations 1.20621 0.83021 1.05353 1.04922 1.27561 1.03151 0.90976 1.02079 1.66206 1.05136 1.32807 1.17919 1.20553 0.90439 0.95006 1.01531 1.20455 0.95734 0.93941 1.03820 1.25529 1.00089 0.95618 1.14358 1.20125 0.88575 1.03981 0.95205 1.21110 0.80349 0.98941 0.97169 1.44835 1.14987 1.71978 1.06658 1.15607 0.80049 0.78211 0.84458 1.90877 1.67284 1.61611 1.32627 1.47675 1.11104 1.68584 1.09422 1.22470 0.92678 0.99197 0.87131 1.23019 0.98805 0.98535 0.95513 1.19935 0.83735 0.84237 0.94254 1.86077 1.62280 1.51155 1.37342 1.21398 0.93352 1.16679 1.27510 0.94568 1.25944 1.00519 0.95174 0.96018 1.70098 1.15589 1.34816 1.37065 0.84774 0.74806 0.75680 0.80736 1.20904 1.26846 1.17049 1.22406 0.92053 0.98826 0.87088 1.83952 0.97123 1.11653 1.68112 0.88575 0.88959 0.88037 0.89217 0.91078 0.89812 0.86787 0.88099 0.93221 0.92529 0.74950 0.89938 0.88027 0.90386 0.89327 0.76834 0.92390 0.93905 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.46 71.24 0.75 0.02 16 2 C 0.04 0.66 7.39 88.52 0.65 1.31 16 3 N -0.50 -10.61 10.53 -179.40 -1.89 -12.50 16 4 C 0.06 1.07 6.74 41.52 0.28 1.35 16 5 C -0.08 -1.17 9.82 71.23 0.70 -0.47 16 6 C -0.23 -3.93 5.84 24.64 0.14 -3.78 16 7 C -0.04 -0.51 5.25 29.85 0.16 -0.35 16 8 C 0.15 3.05 5.66 86.38 0.49 3.53 16 9 N -0.73 -16.41 5.52 -478.53 -2.64 -19.05 16 10 C 0.71 24.29 8.49 179.06 1.52 25.81 16 11 O -0.64 -27.89 16.68 -4.01 -0.07 -27.95 16 12 N -0.63 -21.36 3.34 -829.07 -2.77 -24.13 16 13 C 0.11 2.86 6.56 86.85 0.57 3.43 16 14 C -0.12 -4.23 5.87 31.98 0.19 -4.04 16 15 C 0.22 9.20 0.68 -10.36 -0.01 9.19 16 16 O -0.56 -21.96 8.75 -148.98 -1.30 -23.26 16 17 C -0.55 -29.40 8.81 25.60 0.23 -29.17 16 18 H 0.04 2.20 7.81 -2.91 -0.02 2.18 16 19 C 0.02 1.27 5.46 84.65 0.46 1.74 16 20 N -0.94 -56.48 13.96 21.45 0.30 -56.18 16 21 Si 1.01 45.61 24.83 68.60 1.70 47.32 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.34 -15.83 7.11 99.48 0.71 -15.13 16 24 H -0.25 -10.14 5.19 99.48 0.52 -9.62 16 25 C 0.12 4.90 6.24 86.67 0.54 5.44 16 26 S 0.14 2.07 23.18 -56.49 -1.31 0.76 16 27 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.08 1.09 7.15 -2.39 -0.02 1.07 16 33 H 0.11 1.04 7.44 -2.39 -0.02 1.03 16 34 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.06 1.32 7.94 -2.39 -0.02 1.30 16 37 H 0.41 6.39 6.95 -92.71 -0.64 5.75 16 38 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.10 1.90 7.29 -2.39 -0.02 1.88 16 40 H 0.08 2.83 8.04 -2.39 -0.02 2.81 16 41 H 0.09 3.04 6.24 -2.39 -0.01 3.03 16 42 H 0.38 13.56 8.98 -74.05 -0.66 12.90 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.04 1.97 7.66 -2.38 -0.02 1.95 16 45 H 0.06 2.27 8.05 -2.39 -0.02 2.25 16 Total: -1.00 -76.78 376.45 -1.77 -78.56 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.47 Total: 22.42 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 6.67 Total: 14.01 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -6.99 Total: -111.85 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -1.37 Total: -51.21 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.70 Total: 47.32 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.31 Total: 0.76 kcal Total: -76.78 -1.77 -78.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591955074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.192 kcal (2) G-P(sol) polarization free energy of solvation -76.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds