Wall clock time and date at job start Tue Mar 31 2020 22:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.76172 * 125.97507 * 2 1 4 4 C 1.70972 * 90.34046 * 179.97438 * 3 2 1 5 5 N 1.38746 * 124.94486 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99930 * 0.02562 * 5 4 3 7 7 O 1.21377 * 119.99935 * 359.97438 * 6 5 4 8 8 C 1.49312 * 119.99681 * 180.02562 * 6 5 4 9 9 O 1.21361 * 119.99856 * 354.16435 * 8 6 5 10 10 N 1.34775 * 119.99210 * 174.16918 * 8 6 5 11 11 C 1.46499 * 120.00846 * 3.62842 * 10 8 6 12 12 C 1.46504 * 119.99451 * 183.62932 * 10 8 6 13 13 H 1.09006 * 109.47058 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.47023 * 240.00088 * 12 10 8 15 15 C 1.50699 * 109.47499 * 119.99714 * 12 10 8 16 16 H 1.08009 * 119.99636 * 0.02562 * 15 12 10 17 17 C 1.37870 * 120.00442 * 179.97438 * 15 12 10 18 18 N 1.31515 * 119.99875 * 0.02562 * 17 15 12 19 19 Si 1.86799 * 120.00182 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.47317 * 89.99969 * 19 17 15 21 21 H 1.48504 * 109.47245 * 210.00208 * 19 17 15 22 22 H 1.48505 * 109.46918 * 329.99990 * 19 17 15 23 23 N 1.29689 * 110.11158 * 359.97438 * 4 3 2 24 24 C 1.31915 * 116.92247 * 359.72112 * 23 4 3 25 25 C 1.50699 * 122.71477 * 180.34750 * 24 23 4 26 26 C 1.53004 * 109.47022 * 300.18313 * 25 24 23 27 27 C 1.53006 * 109.47137 * 60.18041 * 25 24 23 28 28 H 1.09006 * 109.46804 * 0.03124 * 1 2 3 29 29 H 1.09000 * 109.47546 * 240.02878 * 1 2 3 30 30 H 1.09003 * 109.47171 * 120.02514 * 1 2 3 31 31 H 0.97000 * 119.99756 * 180.02562 * 5 4 3 32 32 H 1.08992 * 109.46980 * 83.98963 * 11 10 8 33 33 H 1.09000 * 109.47040 * 203.99765 * 11 10 8 34 34 H 1.09006 * 109.46507 * 323.99164 * 11 10 8 35 35 H 1.08999 * 109.47682 * 59.99829 * 14 12 10 36 36 H 1.09003 * 109.47125 * 180.02562 * 14 12 10 37 37 H 1.09006 * 109.46810 * 299.99670 * 14 12 10 38 38 H 0.97007 * 120.00137 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.47218 * 180.18194 * 25 24 23 40 40 H 1.09003 * 109.47221 * 59.99882 * 26 25 24 41 41 H 1.08998 * 109.47319 * 179.97438 * 26 25 24 42 42 H 1.09001 * 109.46660 * 299.99868 * 26 25 24 43 43 H 1.08997 * 109.47192 * 60.00468 * 27 25 24 44 44 H 1.09002 * 109.46628 * 180.02562 * 27 25 24 45 45 H 1.08996 * 109.46959 * 299.99875 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5419 1.4257 0.0000 4 6 3.9315 0.4296 0.0008 5 7 5.2400 0.8909 0.0006 6 6 5.4874 2.2158 0.0003 7 8 4.5655 3.0053 -0.0003 8 6 6.8956 2.7122 -0.0004 9 8 7.8155 1.9278 0.1061 10 7 7.1449 4.0314 -0.1193 11 6 6.0342 4.9854 -0.1678 12 6 8.5267 4.5112 -0.2001 13 1 9.2095 3.6631 -0.1477 14 6 8.8053 5.4623 0.9656 15 6 8.7300 5.2406 -1.5031 16 1 7.9114 5.3374 -2.2011 17 6 9.9604 5.7852 -1.8037 18 7 10.9569 5.6677 -0.9535 19 14 10.2120 6.6898 -3.4185 20 1 9.8974 8.1293 -3.2338 21 1 11.6245 6.5436 -3.8530 22 1 9.3141 6.1156 -4.4527 23 7 3.5844 -0.8200 0.0015 24 6 2.2913 -1.0807 0.0073 25 6 1.7435 -2.4846 0.0165 26 6 2.2296 -3.2299 -1.2282 27 6 2.2306 -3.2139 1.2703 28 1 -0.3633 1.0277 -0.0006 29 1 -0.3634 -0.5134 0.8902 30 1 -0.3634 -0.5142 -0.8898 31 1 5.9767 0.2599 0.0007 32 1 5.7183 5.2270 0.8470 33 1 6.3583 5.8949 -0.6737 34 1 5.1997 4.5441 -0.7128 35 1 8.6584 4.9348 1.9081 36 1 9.8333 5.8197 0.9053 37 1 8.1225 6.3104 0.9136 38 1 11.8227 6.0506 -1.1652 39 1 0.6540 -2.4496 0.0168 40 1 3.3190 -3.2649 -1.2284 41 1 1.8338 -4.2454 -1.2213 42 1 1.8825 -2.7103 -2.1213 43 1 1.8844 -2.6830 2.1570 44 1 1.8348 -4.2294 1.2767 45 1 3.3200 -3.2489 1.2700 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595012457.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:42 Heat of formation + Delta-G solvation = -19.210293 kcal Electronic energy + Delta-G solvation = -27131.441244 eV Core-core repulsion = 23276.451308 eV Total energy + Delta-G solvation = -3854.989935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.00084 -40.08371 -38.40644 -36.31871 -35.47498 -34.11459 -32.86357 -32.13968 -29.65353 -27.30482 -27.29115 -26.31298 -25.37404 -25.00933 -23.77545 -22.12435 -21.32280 -20.05808 -18.62939 -18.01991 -17.04653 -17.00342 -16.46322 -16.20716 -15.94282 -15.26380 -15.03185 -14.98289 -14.53500 -14.25372 -13.95276 -13.43736 -13.33630 -13.20610 -13.04498 -12.78031 -12.63613 -12.57002 -12.34112 -12.30146 -11.94981 -11.71401 -11.44548 -11.20415 -11.07638 -11.04108 -10.91896 -10.85210 -10.71014 -10.52744 -10.36939 -10.26607 -9.76229 -9.32183 -9.15866 -9.06077 -8.54413 -8.22899 -7.87165 -6.18825 -4.27909 0.55958 1.04727 1.57234 1.75132 2.23600 2.73962 3.21402 3.28761 3.31463 3.46626 3.74292 4.28568 4.33333 4.57890 4.65057 4.82312 4.98595 5.03579 5.12705 5.13221 5.31263 5.42916 5.47749 5.54592 5.67738 5.70147 5.72639 5.84634 5.96807 6.07215 6.08741 6.11506 6.19256 6.49877 6.52703 6.64458 6.69700 6.88975 7.09041 7.26854 7.51676 7.57528 7.71372 7.84541 7.98953 8.21080 8.41330 8.76339 9.38738 10.86633 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.002474 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.792890 B =11315.114291 C =11530.258042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.288 4.288 3 S 0.241 5.759 4 C 0.243 3.757 5 N -0.601 5.601 6 C 0.508 3.492 7 O -0.484 6.484 8 C 0.501 3.499 9 O -0.528 6.528 10 N -0.545 5.545 11 C 0.066 3.934 12 C 0.255 3.745 13 H 0.068 0.932 14 C -0.147 4.147 15 C -0.532 4.532 16 H 0.063 0.937 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.902 3.098 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 N -0.501 5.501 24 C 0.094 3.906 25 C -0.018 4.018 26 C -0.141 4.141 27 C -0.141 4.141 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.434 0.566 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.014 0.986 36 H 0.098 0.902 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.185 -11.542 2.992 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.411 4.411 3 S 0.493 5.507 4 C -0.124 4.124 5 N -0.252 5.252 6 C 0.290 3.710 7 O -0.357 6.357 8 C 0.281 3.719 9 O -0.407 6.407 10 N -0.276 5.276 11 C -0.077 4.077 12 C 0.156 3.844 13 H 0.086 0.914 14 C -0.205 4.205 15 C -0.570 4.570 16 H 0.081 0.919 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.729 3.271 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 N -0.224 5.224 24 C -0.039 4.039 25 C -0.039 4.039 26 C -0.199 4.199 27 C -0.198 4.198 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.275 0.725 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.033 0.967 36 H 0.116 0.884 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.724 -10.502 3.065 22.555 hybrid contribution 0.407 -0.601 -0.842 1.112 sum -19.316 -11.103 2.223 22.390 Atomic orbital electron populations 1.20088 0.87155 1.02677 1.02496 1.26176 1.02059 0.97263 1.15555 1.84880 0.92735 1.05056 1.68058 1.23221 0.91807 0.93042 1.04328 1.42593 1.05004 1.08534 1.69079 1.21368 0.92411 0.81022 0.76182 1.90598 1.46072 1.52963 1.46086 1.19146 0.86552 0.84713 0.81508 1.90763 1.44479 1.54807 1.50621 1.48311 1.10946 1.03714 1.64585 1.22223 0.89335 0.94379 1.01755 1.19242 0.74865 0.95208 0.95103 0.91437 1.22100 1.04559 0.98597 0.95288 1.21260 0.97227 1.36042 1.02472 0.91897 1.24882 0.95563 0.95865 0.97288 1.69872 1.02266 1.44763 1.35397 0.86430 0.77572 0.79854 0.83197 1.20460 1.21001 1.19823 1.66040 1.18379 1.16302 1.21644 1.19588 0.86071 0.96444 1.01760 1.19740 0.99262 0.88217 0.96652 1.21774 1.02400 0.99254 0.96435 1.21772 1.02381 0.99343 0.96347 0.91486 0.90880 0.90865 0.72472 0.93133 0.90047 0.89351 0.96712 0.88396 0.94732 0.92459 0.89801 0.91711 0.92376 0.92893 0.92910 0.92369 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.49 9.22 36.01 0.33 -0.15 16 2 C -0.29 -3.18 6.58 -35.96 -0.24 -3.42 16 3 S 0.24 3.09 20.21 -107.50 -2.17 0.92 16 4 C 0.24 3.52 8.18 -87.55 -0.72 2.80 16 5 N -0.60 -9.02 5.39 -13.55 -0.07 -9.09 16 6 C 0.51 8.48 7.73 -11.65 -0.09 8.39 16 7 O -0.48 -7.94 10.59 5.47 0.06 -7.89 16 8 C 0.50 10.03 7.73 -11.65 -0.09 9.94 16 9 O -0.53 -11.78 15.82 5.49 0.09 -11.69 16 10 N -0.55 -11.45 2.75 -175.82 -0.48 -11.93 16 11 C 0.07 1.17 8.49 59.85 0.51 1.67 16 12 C 0.25 6.25 2.63 -69.08 -0.18 6.07 16 13 H 0.07 1.88 6.91 -51.93 -0.36 1.52 16 14 C -0.15 -3.39 8.97 37.16 0.33 -3.06 16 15 C -0.53 -13.83 7.95 -34.44 -0.27 -14.11 16 16 H 0.06 1.62 7.44 -52.48 -0.39 1.23 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -24.14 11.32 55.43 0.63 -23.52 16 19 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 N -0.50 -7.02 10.48 -11.32 -0.12 -7.14 16 24 C 0.09 1.12 5.31 -84.20 -0.45 0.67 16 25 C -0.02 -0.16 3.20 -91.77 -0.29 -0.46 16 26 C -0.14 -1.25 9.14 37.16 0.34 -0.91 16 27 C -0.14 -1.23 9.14 37.16 0.34 -0.89 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.43 6.19 8.30 -40.82 -0.34 5.85 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.48 7.12 -51.93 -0.37 1.11 16 34 H 0.09 1.48 5.35 -51.93 -0.28 1.20 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 37 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.08 0.62 7.01 -51.93 -0.36 0.25 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -28.92 380.71 -8.53 -37.45 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.60 Total: 3.50 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -0.57 Total: 8.23 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.05 Total: -51.68 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.14 Total: -19.58 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.17 Total: 0.92 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.92 -8.53 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595012457.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.242 kcal (2) G-P(sol) polarization free energy of solvation -28.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds