Wall clock time and date at job start Tue Mar 31 2020 22:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 110.53386 * 2 1 4 4 C 1.38380 * 119.92507 * 271.09592 * 3 2 1 5 5 C 1.38351 * 120.30267 * 179.76383 * 4 3 2 6 6 C 1.37964 * 120.15031 * 0.52043 * 5 4 3 7 7 C 1.39614 * 119.84609 * 359.74334 * 6 5 4 8 8 C 1.43202 * 120.14873 * 180.02562 * 7 6 5 9 9 N 5.95820 * 107.48159 * 36.88985 * 2 1 3 10 10 C 1.37924 * 119.92308 * 91.37849 * 3 2 1 11 11 N 1.47308 * 110.59754 * 122.83606 * 2 1 3 12 12 C 1.34526 * 106.62305 * 118.52524 * 11 2 1 13 13 O 1.21536 * 123.76994 * 180.02562 * 12 11 2 14 14 N 1.33795 * 112.45363 * 359.97438 * 12 11 2 15 15 C 1.46500 * 124.17493 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47315 * 266.95542 * 15 14 12 17 17 C 1.50705 * 115.54714 * 280.34303 * 16 15 14 18 18 H 1.07999 * 120.00034 * 114.72160 * 17 16 15 19 19 C 1.37880 * 119.99478 * 294.72114 * 17 16 15 20 20 N 1.31513 * 120.00521 * 352.03693 * 19 17 16 21 21 Si 1.86803 * 119.99666 * 172.03553 * 19 17 16 22 22 H 1.48500 * 109.47295 * 59.99801 * 21 19 17 23 23 H 1.48492 * 109.47181 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47246 * 299.99906 * 21 19 17 25 25 C 1.52997 * 117.50407 * 134.63033 * 16 15 14 26 26 C 1.52995 * 117.49987 * 66.00356 * 16 15 14 27 27 C 1.34765 * 111.64989 * 359.97438 * 14 12 11 28 28 O 1.21228 * 127.16031 * 179.97438 * 27 14 12 29 29 H 1.08998 * 109.47183 * 297.87131 * 1 2 3 30 30 H 1.09007 * 109.47224 * 57.86931 * 1 2 3 31 31 H 1.09000 * 109.47506 * 177.86471 * 1 2 3 32 32 H 1.07998 * 119.85306 * 0.03347 * 4 3 2 33 33 H 1.08006 * 119.92013 * 180.23629 * 5 4 3 34 34 H 1.08001 * 120.07561 * 179.76239 * 6 5 4 35 35 H 1.08004 * 120.07505 * 359.95394 * 10 3 2 36 36 H 0.96997 * 126.68649 * 298.25450 * 11 2 1 37 37 H 1.08998 * 109.47150 * 26.95088 * 15 14 12 38 38 H 1.09003 * 109.47369 * 146.95308 * 15 14 12 39 39 H 0.96996 * 119.99966 * 185.05474 * 20 19 17 40 40 H 1.08995 * 117.49720 * 0.02562 * 25 16 15 41 41 H 1.09004 * 117.49870 * 145.01860 * 25 16 15 42 42 H 1.09003 * 117.50288 * 214.98118 * 26 16 15 43 43 H 1.08999 * 117.49898 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4112 0.0000 4 6 2.2793 2.0658 -1.1991 5 6 2.7598 3.3631 -1.2081 6 6 3.0324 4.0094 -0.0201 7 6 2.8172 3.3530 1.1932 8 6 3.0975 4.0179 2.4302 9 7 3.3199 4.5452 3.4114 10 6 2.3269 2.0454 1.1950 11 7 2.0483 -0.7477 1.1586 12 6 2.7599 -1.7772 0.6652 13 8 3.3282 -2.5988 1.3573 14 7 2.7710 -1.7961 -0.6726 15 6 3.4670 -2.8046 -1.4755 16 6 4.8703 -2.3022 -1.8209 17 6 4.9467 -1.3210 -2.9622 18 1 5.2664 -0.3055 -2.7809 19 6 4.6085 -1.7200 -4.2380 20 7 4.3710 -2.9889 -4.4890 21 14 4.4874 -0.4580 -5.6099 22 1 5.8001 0.2150 -5.7807 23 1 4.1106 -1.1373 -6.8755 24 1 3.4548 0.5516 -5.2642 25 6 6.0331 -3.2821 -1.6520 26 6 5.8601 -2.1232 -0.6681 27 6 2.0621 -0.7736 -1.1902 28 8 1.8876 -0.5233 -2.3635 29 1 -0.3633 0.4804 0.9084 30 1 -0.3634 0.5466 -0.8703 31 1 -0.3634 -1.0269 -0.0383 32 1 2.0714 1.5631 -2.1321 33 1 2.9261 3.8695 -2.1475 34 1 3.4111 5.0208 -0.0286 35 1 2.1578 1.5321 2.1301 36 1 1.9074 -0.5364 2.0947 37 1 3.5427 -3.7321 -0.9079 38 1 2.9095 -2.9855 -2.3946 39 1 4.2053 -3.2805 -5.3991 40 1 5.7983 -4.2849 -1.2952 41 1 6.8536 -3.2174 -2.3666 42 1 6.5670 -1.2961 -0.7354 43 1 5.5118 -2.3638 0.3363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596253963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:35 Heat of formation + Delta-G solvation = 48.168597 kcal Electronic energy + Delta-G solvation = -30153.900422 eV Core-core repulsion = 26166.388303 eV Total energy + Delta-G solvation = -3987.512119 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.29432 -39.63128 -38.09948 -37.02532 -36.52032 -35.88959 -34.19278 -32.00444 -31.81562 -31.34437 -29.66407 -27.26754 -25.47597 -24.63649 -24.12463 -22.92696 -21.34901 -21.15857 -20.63471 -19.04399 -18.69524 -17.57204 -16.71187 -16.34178 -16.22633 -15.76388 -15.62426 -14.89911 -14.76481 -14.59944 -14.46949 -14.32278 -13.99007 -13.82872 -13.65196 -13.37573 -13.19426 -12.94747 -12.81202 -12.55824 -12.46064 -12.30145 -11.80455 -11.75279 -11.40622 -11.36884 -10.99676 -10.84705 -10.53744 -10.48892 -10.13098 -10.00004 -9.72808 -9.45256 -9.18531 -9.05026 -8.93213 -8.80155 -8.48068 -8.16281 -6.04378 -4.08116 0.57041 0.99630 2.07065 2.44299 2.63381 2.73847 3.31375 3.34397 3.37452 3.41153 3.52246 3.63726 3.67060 4.07405 4.26874 4.42838 4.59721 4.71754 4.86264 5.09363 5.18774 5.20379 5.34082 5.37656 5.42203 5.49608 5.62719 5.67487 5.82525 5.97270 6.07615 6.14357 6.18695 6.24068 6.34443 6.40265 6.56599 6.63308 6.77828 6.91892 6.96114 7.05445 7.25793 7.29227 7.46283 7.64187 7.88275 7.92809 8.39374 8.52728 8.88598 9.57123 11.04169 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.004858 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.507253 B = 5761.804619 C = 6661.616558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.160 3.840 3 C -0.088 4.088 4 C -0.066 4.066 5 C -0.114 4.114 6 C -0.064 4.064 7 C -0.036 4.036 8 C 0.260 3.740 9 N -0.422 5.422 10 C -0.050 4.050 11 N -0.729 5.729 12 C 0.704 3.296 13 O -0.546 6.546 14 N -0.553 5.553 15 C 0.159 3.841 16 C 0.030 3.970 17 C -0.487 4.487 18 H 0.055 0.945 19 C 0.082 3.918 20 N -0.881 5.881 21 Si 0.887 3.113 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.270 1.270 25 C -0.161 4.161 26 C -0.207 4.207 27 C 0.534 3.466 28 O -0.436 6.436 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.432 0.568 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.262 0.738 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.377 9.057 7.249 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.068 3.932 3 C -0.090 4.090 4 C -0.085 4.085 5 C -0.132 4.132 6 C -0.084 4.084 7 C -0.039 4.039 8 C -0.056 4.056 9 N -0.097 5.097 10 C -0.071 4.071 11 N -0.394 5.394 12 C 0.406 3.594 13 O -0.420 6.420 14 N -0.297 5.297 15 C 0.039 3.961 16 C 0.029 3.971 17 C -0.524 4.524 18 H 0.073 0.927 19 C -0.122 4.122 20 N -0.518 5.518 21 Si 0.714 3.286 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.195 1.195 25 C -0.200 4.200 26 C -0.245 4.245 27 C 0.318 3.682 28 O -0.303 6.303 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.275 0.725 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.892 9.327 8.240 15.295 hybrid contribution 0.056 0.480 -0.702 0.852 sum -8.836 9.807 7.538 15.201 Atomic orbital electron populations 1.21985 0.89675 1.03966 1.04275 1.20208 0.96742 0.89745 0.86501 1.19316 1.02018 0.93915 0.93703 1.21782 0.93328 0.94382 0.98987 1.21143 0.99101 0.94734 0.98188 1.21244 0.96592 0.99845 0.90756 1.15836 1.06888 0.94059 0.87156 1.25676 0.93526 0.93483 0.92875 1.81251 1.09037 1.08674 1.10771 1.20756 0.96033 0.92311 0.97993 1.45649 1.56287 1.29228 1.08258 1.15942 0.79079 0.81915 0.82500 1.90957 1.48262 1.41586 1.61202 1.46415 1.47651 1.28874 1.06760 1.21516 0.94682 0.86327 0.93525 1.19127 0.85844 0.98044 0.94080 1.20242 1.45697 0.95613 0.90843 0.92690 1.24846 0.93993 0.94970 0.98348 1.69915 1.47363 1.14236 1.20273 0.86733 0.78496 0.82117 0.81209 1.20625 1.21405 1.19549 1.22689 1.03406 0.92615 1.01268 1.22945 1.05741 1.01167 0.94598 1.20182 0.78095 0.80805 0.89082 1.90784 1.55880 1.67677 1.15956 0.90488 0.89616 0.90887 0.82922 0.84332 0.84853 0.85213 0.72463 0.91470 0.87495 0.92857 0.91682 0.90045 0.90884 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.96 37.16 0.33 -0.93 16 2 C 0.16 1.95 1.16 -133.24 -0.15 1.80 16 3 C -0.09 -1.01 4.88 -104.69 -0.51 -1.52 16 4 C -0.07 -0.80 9.18 -39.49 -0.36 -1.16 16 5 C -0.11 -1.12 10.03 -39.64 -0.40 -1.52 16 6 C -0.06 -0.57 9.76 -39.17 -0.38 -0.95 16 7 C -0.04 -0.36 5.73 -106.93 -0.61 -0.97 16 8 C 0.26 2.90 15.33 -22.48 -0.34 2.55 16 9 N -0.42 -5.59 18.54 41.83 0.78 -4.81 16 10 C -0.05 -0.49 9.05 -39.17 -0.35 -0.85 16 11 N -0.73 -8.96 5.29 -54.02 -0.29 -9.25 16 12 C 0.70 12.15 8.47 -88.02 -0.75 11.40 16 13 O -0.55 -10.94 16.24 5.33 0.09 -10.86 16 14 N -0.55 -10.45 2.57 -120.73 -0.31 -10.76 16 15 C 0.16 3.49 5.51 -4.04 -0.02 3.47 16 16 C 0.03 0.72 1.48 -155.66 -0.23 0.49 16 17 C -0.49 -12.59 8.82 -34.44 -0.30 -12.89 16 18 H 0.05 1.46 7.83 -52.49 -0.41 1.05 16 19 C 0.08 2.15 5.26 -17.82 -0.09 2.05 16 20 N -0.88 -23.76 12.54 55.43 0.70 -23.07 16 21 Si 0.89 20.63 29.55 -169.99 -5.02 15.61 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C -0.16 -3.71 9.88 -26.73 -0.26 -3.98 16 26 C -0.21 -4.61 9.88 -26.73 -0.26 -4.87 16 27 C 0.53 9.23 6.53 -10.55 -0.07 9.16 16 28 O -0.44 -8.66 15.71 5.60 0.09 -8.58 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.15 2.15 5.77 -52.49 -0.30 1.85 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.13 1.03 6.93 -52.48 -0.36 0.66 16 36 H 0.43 3.93 8.08 -40.82 -0.33 3.60 16 37 H 0.07 1.44 7.60 -51.93 -0.39 1.05 16 38 H 0.11 2.57 7.16 -51.93 -0.37 2.20 16 39 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 40 H 0.06 1.42 8.09 -51.93 -0.42 1.00 16 41 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 42 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 43 H 0.08 1.68 6.78 -51.93 -0.35 1.33 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -31.09 375.04 -8.14 -39.23 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.04 Total: 5.55 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: -4.78 Total: 1.28 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.87 Total: -47.89 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.17 Total: -19.43 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.09 -8.14 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596253963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.401 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds