Wall clock time and date at job start Tue Mar 31 2020 22:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 110.53386 * 2 1 4 4 C 1.38380 * 119.92507 * 271.09592 * 3 2 1 5 5 C 1.38351 * 120.30267 * 179.76383 * 4 3 2 6 6 C 1.37964 * 120.15031 * 0.52043 * 5 4 3 7 7 C 1.39614 * 119.84609 * 359.74334 * 6 5 4 8 8 C 1.43202 * 120.14873 * 180.02562 * 7 6 5 9 9 N 5.95820 * 107.48159 * 36.88985 * 2 1 3 10 10 C 1.37924 * 119.92308 * 91.37849 * 3 2 1 11 11 N 1.47308 * 110.59754 * 122.83606 * 2 1 3 12 12 C 1.34526 * 106.62305 * 118.52524 * 11 2 1 13 13 O 1.21536 * 123.76994 * 180.02562 * 12 11 2 14 14 N 1.33795 * 112.45363 * 359.97438 * 12 11 2 15 15 C 1.46500 * 124.17493 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47315 * 266.95542 * 15 14 12 17 17 C 1.50705 * 115.54714 * 280.34303 * 16 15 14 18 18 H 1.07999 * 120.00034 * 114.72160 * 17 16 15 19 19 C 1.37880 * 119.99478 * 294.72114 * 17 16 15 20 20 N 1.31513 * 120.00521 * 352.03693 * 19 17 16 21 21 Si 1.86803 * 119.99666 * 172.03553 * 19 17 16 22 22 H 1.48500 * 109.47295 * 59.99801 * 21 19 17 23 23 H 1.48492 * 109.47181 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47246 * 299.99906 * 21 19 17 25 25 C 1.52997 * 117.50407 * 134.63033 * 16 15 14 26 26 C 1.52995 * 117.49987 * 66.00356 * 16 15 14 27 27 C 1.34765 * 111.64989 * 359.97438 * 14 12 11 28 28 O 1.21228 * 127.16031 * 179.97438 * 27 14 12 29 29 H 1.08998 * 109.47183 * 297.87131 * 1 2 3 30 30 H 1.09007 * 109.47224 * 57.86931 * 1 2 3 31 31 H 1.09000 * 109.47506 * 177.86471 * 1 2 3 32 32 H 1.07998 * 119.85306 * 0.03347 * 4 3 2 33 33 H 1.08006 * 119.92013 * 180.23629 * 5 4 3 34 34 H 1.08001 * 120.07561 * 179.76239 * 6 5 4 35 35 H 1.08004 * 120.07505 * 359.95394 * 10 3 2 36 36 H 0.96997 * 126.68649 * 298.25450 * 11 2 1 37 37 H 1.08998 * 109.47150 * 26.95088 * 15 14 12 38 38 H 1.09003 * 109.47369 * 146.95308 * 15 14 12 39 39 H 0.96996 * 119.99966 * 185.05474 * 20 19 17 40 40 H 1.08995 * 117.49720 * 0.02562 * 25 16 15 41 41 H 1.09004 * 117.49870 * 145.01860 * 25 16 15 42 42 H 1.09003 * 117.50288 * 214.98118 * 26 16 15 43 43 H 1.08999 * 117.49898 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4112 0.0000 4 6 2.2793 2.0658 -1.1991 5 6 2.7598 3.3631 -1.2081 6 6 3.0324 4.0094 -0.0201 7 6 2.8172 3.3530 1.1932 8 6 3.0975 4.0179 2.4302 9 7 3.3199 4.5452 3.4114 10 6 2.3269 2.0454 1.1950 11 7 2.0483 -0.7477 1.1586 12 6 2.7599 -1.7772 0.6652 13 8 3.3282 -2.5988 1.3573 14 7 2.7710 -1.7961 -0.6726 15 6 3.4670 -2.8046 -1.4755 16 6 4.8703 -2.3022 -1.8209 17 6 4.9467 -1.3210 -2.9622 18 1 5.2664 -0.3055 -2.7809 19 6 4.6085 -1.7200 -4.2380 20 7 4.3710 -2.9889 -4.4890 21 14 4.4874 -0.4580 -5.6099 22 1 5.8001 0.2150 -5.7807 23 1 4.1106 -1.1373 -6.8755 24 1 3.4548 0.5516 -5.2642 25 6 6.0331 -3.2821 -1.6520 26 6 5.8601 -2.1232 -0.6681 27 6 2.0621 -0.7736 -1.1902 28 8 1.8876 -0.5233 -2.3635 29 1 -0.3633 0.4804 0.9084 30 1 -0.3634 0.5466 -0.8703 31 1 -0.3634 -1.0269 -0.0383 32 1 2.0714 1.5631 -2.1321 33 1 2.9261 3.8695 -2.1475 34 1 3.4111 5.0208 -0.0286 35 1 2.1578 1.5321 2.1301 36 1 1.9074 -0.5364 2.0947 37 1 3.5427 -3.7321 -0.9079 38 1 2.9095 -2.9855 -2.3946 39 1 4.2053 -3.2805 -5.3991 40 1 5.7983 -4.2849 -1.2952 41 1 6.8536 -3.2174 -2.3666 42 1 6.5670 -1.2961 -0.7354 43 1 5.5118 -2.3638 0.3363 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596253963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:34 Heat of formation + Delta-G solvation = 30.746543 kcal Electronic energy + Delta-G solvation = -30154.655898 eV Core-core repulsion = 26166.388303 eV Total energy + Delta-G solvation = -3988.267596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.57166 -40.56337 -39.47449 -38.60754 -37.65110 -37.17127 -35.57403 -34.00498 -32.81967 -32.21161 -30.50061 -28.88555 -27.40956 -25.72751 -25.02363 -24.06048 -23.01143 -22.42347 -21.97965 -20.77650 -19.69830 -18.83137 -18.28341 -17.65045 -17.28867 -17.05736 -16.75346 -16.55528 -16.27996 -15.87259 -15.65296 -15.53803 -15.21645 -14.98922 -14.85318 -14.80819 -14.26552 -14.11640 -13.87361 -13.63950 -13.36147 -13.31638 -13.25376 -13.10227 -12.92578 -12.71722 -12.63136 -12.37815 -12.25554 -12.12651 -11.81469 -11.71829 -11.07546 -10.82347 -10.67437 -10.54147 -10.27809 -10.07732 -9.98828 -9.89361 -8.06228 -6.13932 -0.26208 0.20072 0.75710 1.33132 1.44017 1.48745 1.53123 1.57986 1.85071 2.11821 2.24706 2.48216 2.74798 2.83381 2.93912 3.21356 3.31172 3.53298 3.82184 3.86503 4.11806 4.14665 4.23389 4.29969 4.43812 4.50286 4.57082 4.58953 4.64911 4.73425 4.78618 4.88133 4.89983 4.94720 5.13522 5.17212 5.19444 5.21118 5.33298 5.42911 5.48527 5.59272 5.75107 5.82269 5.87439 6.24326 6.40555 6.41925 6.60434 6.84657 7.20925 7.52985 9.01609 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.004858 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.507253 B = 5761.804619 C = 6661.616558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.176 3.824 3 C -0.098 4.098 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.050 4.050 7 C -0.038 4.038 8 C 0.283 3.717 9 N -0.459 5.459 10 C -0.042 4.042 11 N -0.701 5.701 12 C 0.702 3.298 13 O -0.577 6.577 14 N -0.566 5.566 15 C 0.172 3.828 16 C 0.014 3.986 17 C -0.491 4.491 18 H 0.043 0.957 19 C 0.045 3.955 20 N -0.904 5.904 21 Si 0.934 3.066 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.267 1.267 25 C -0.164 4.164 26 C -0.187 4.187 27 C 0.523 3.477 28 O -0.469 6.469 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.152 0.848 36 H 0.450 0.550 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.201 11.072 8.543 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.085 3.915 3 C -0.100 4.100 4 C -0.102 4.102 5 C -0.132 4.132 6 C -0.071 4.071 7 C -0.041 4.041 8 C -0.032 4.032 9 N -0.135 5.135 10 C -0.062 4.062 11 N -0.367 5.367 12 C 0.404 3.596 13 O -0.453 6.453 14 N -0.309 5.309 15 C 0.051 3.949 16 C 0.013 3.987 17 C -0.529 4.529 18 H 0.061 0.939 19 C -0.156 4.156 20 N -0.541 5.541 21 Si 0.760 3.240 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.192 1.192 25 C -0.203 4.203 26 C -0.225 4.225 27 C 0.310 3.690 28 O -0.339 6.339 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.177 0.823 35 H 0.170 0.830 36 H 0.298 0.702 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.743 11.390 9.575 17.786 hybrid contribution 0.321 -0.116 -1.131 1.181 sum -9.422 11.274 8.444 16.947 Atomic orbital electron populations 1.22071 0.86675 1.04488 1.06356 1.20195 0.98625 0.89251 0.83463 1.19178 1.03375 0.93231 0.94188 1.21716 0.94668 0.95529 0.98316 1.21311 0.98514 0.93904 0.99427 1.21510 0.94956 1.00754 0.89849 1.15863 1.07202 0.94111 0.86926 1.25686 0.92415 0.92578 0.92492 1.81290 1.10411 1.09892 1.11880 1.20880 0.94956 0.92284 0.98093 1.45474 1.54564 1.27406 1.09295 1.15992 0.79351 0.82592 0.81707 1.90935 1.49818 1.43034 1.61561 1.46423 1.47953 1.28978 1.07568 1.21027 0.93615 0.87299 0.92954 1.19204 0.86971 0.98224 0.94335 1.20333 1.45393 0.95381 0.91746 0.93879 1.25384 0.93900 0.96250 1.00108 1.70004 1.48292 1.15425 1.20427 0.85984 0.78570 0.80428 0.79026 1.20111 1.21322 1.19204 1.22652 1.02827 0.93359 1.01416 1.22837 1.04786 1.00545 0.94283 1.21042 0.77337 0.80555 0.90097 1.90755 1.56909 1.68348 1.17841 0.86878 0.89200 0.91060 0.85415 0.82689 0.82255 0.83026 0.70166 0.91538 0.90200 0.93062 0.90720 0.91294 0.90836 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.96 71.98 0.64 -1.47 16 2 C 0.18 3.97 1.16 2.24 0.00 3.98 16 3 C -0.10 -2.03 4.88 -19.91 -0.10 -2.13 16 4 C -0.08 -1.90 9.18 22.33 0.21 -1.70 16 5 C -0.11 -1.97 10.03 22.23 0.22 -1.75 16 6 C -0.05 -0.73 9.76 22.54 0.22 -0.51 16 7 C -0.04 -0.62 5.73 -21.36 -0.12 -0.74 16 8 C 0.28 5.49 15.33 88.33 1.35 6.84 16 9 N -0.46 -11.15 18.54 19.00 0.35 -10.79 16 10 C -0.04 -0.68 9.05 22.54 0.20 -0.47 16 11 N -0.70 -15.61 5.29 -443.25 -2.35 -17.96 16 12 C 0.70 23.57 8.47 179.44 1.52 25.09 16 13 O -0.58 -22.70 16.24 -3.83 -0.06 -22.76 16 14 N -0.57 -21.45 2.57 -773.12 -1.99 -23.44 16 15 C 0.17 7.75 5.51 86.38 0.48 8.23 16 16 C 0.01 0.67 1.48 -52.93 -0.08 0.59 16 17 C -0.49 -25.81 8.82 25.60 0.23 -25.59 16 18 H 0.04 2.32 7.83 -2.91 -0.02 2.29 16 19 C 0.04 2.38 5.26 84.66 0.45 2.82 16 20 N -0.90 -49.79 12.54 21.45 0.27 -49.52 16 21 Si 0.93 42.67 29.55 68.60 2.03 44.69 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 C -0.16 -7.63 9.88 30.59 0.30 -7.33 16 26 C -0.19 -8.30 9.88 30.59 0.30 -8.00 16 27 C 0.52 18.07 6.53 87.94 0.57 18.65 16 28 O -0.47 -19.12 15.71 -2.87 -0.05 -19.17 16 29 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.13 3.63 5.77 -2.91 -0.02 3.61 16 33 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 35 H 0.15 1.75 6.93 -2.91 -0.02 1.73 16 36 H 0.45 6.65 8.08 -92.71 -0.75 5.90 16 37 H 0.07 2.93 7.60 -2.39 -0.02 2.91 16 38 H 0.08 4.01 7.16 -2.39 -0.02 3.99 16 39 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 40 H 0.07 3.28 8.09 -2.39 -0.02 3.26 16 41 H 0.07 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 43 H 0.08 3.52 6.78 -2.39 -0.02 3.50 16 Total: -1.00 -68.71 375.04 4.93 -63.78 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.33 Total: 18.66 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.40 Total: 16.51 kcal Atomic # 7 Polarization: -98.01 SS G_CDS: -3.72 Total: -101.72 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -0.11 Total: -41.93 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -68.71 4.93 -63.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596253963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.527 kcal (2) G-P(sol) polarization free energy of solvation -68.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds