Wall clock time and date at job start Tue Mar 31 2020 22:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34331 * 126.44457 * 2 1 4 4 N 1.34477 * 107.67265 * 179.76745 * 3 2 1 5 5 C 1.30257 * 108.69833 * 0.42330 * 4 3 2 6 6 C 1.50699 * 125.62052 * 179.84304 * 5 4 3 7 7 N 1.46899 * 109.47571 * 89.68803 * 6 5 4 8 8 C 1.46904 * 110.99919 * 66.04434 * 7 6 5 9 9 C 1.46899 * 111.00285 * 190.00138 * 7 6 5 10 10 H 1.08992 * 110.88271 * 303.88363 * 9 7 6 11 11 C 1.55153 * 111.00423 * 179.97438 * 9 7 6 12 12 C 1.54320 * 102.94298 * 206.42560 * 11 9 7 13 13 N 1.47017 * 107.27172 * 22.19309 * 12 11 9 14 14 C 1.34775 * 125.65188 * 181.02607 * 13 12 11 15 15 O 1.21282 * 120.00577 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 0.02562 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46819 * 59.99977 * 22 20 18 24 24 H 1.48494 * 109.47285 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47086 * 300.00273 * 22 20 18 26 26 C 1.47423 * 108.70278 * 1.28711 * 13 12 11 27 27 O 1.33973 * 108.76002 * 359.57167 * 5 4 3 28 28 H 1.08996 * 109.47285 * 269.97331 * 1 2 3 29 29 H 1.08999 * 109.47392 * 29.97942 * 1 2 3 30 30 H 1.09002 * 109.46753 * 149.97737 * 1 2 3 31 31 H 1.08004 * 126.16130 * 0.02562 * 3 2 1 32 32 H 1.09007 * 109.47019 * 329.69027 * 6 5 4 33 33 H 1.08998 * 109.47090 * 209.69138 * 6 5 4 34 34 H 1.08992 * 109.47079 * 183.95276 * 8 7 6 35 35 H 1.08994 * 109.47188 * 303.95855 * 8 7 6 36 36 H 1.09008 * 109.46435 * 63.95836 * 8 7 6 37 37 H 1.09001 * 110.72191 * 88.06075 * 11 9 7 38 38 H 1.08998 * 110.87582 * 324.85843 * 11 9 7 39 39 H 1.09008 * 109.88259 * 262.77746 * 12 11 9 40 40 H 1.09002 * 110.01568 * 141.68306 * 12 11 9 41 41 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 42 42 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 43 43 H 0.97005 * 119.99878 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.36738 * 94.48486 * 26 13 12 45 45 H 1.08997 * 110.36891 * 216.80151 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6479 0.0052 5 6 3.5765 -0.6547 -0.0008 6 6 4.8004 -1.5339 -0.0013 7 7 5.1986 -1.8199 1.3835 8 6 4.1837 -2.6340 2.0656 9 6 6.5142 -2.4718 1.4292 10 1 6.5192 -3.3794 0.8258 11 6 6.9351 -2.7733 2.8918 12 6 8.4763 -2.7809 2.8134 13 7 8.8567 -2.0056 1.6236 14 6 10.1164 -1.7928 1.1943 15 8 10.3136 -1.1340 0.1954 16 6 11.2800 -2.3736 1.9557 17 16 12.8271 -1.9149 1.1357 18 6 13.9853 -2.7028 2.2044 19 1 13.6369 -3.2591 3.0621 20 6 15.3454 -2.6094 1.9435 21 7 15.7699 -1.9318 0.8979 22 14 16.5734 -3.4441 3.0769 23 1 16.3119 -4.9058 3.0995 24 1 17.9514 -3.1958 2.5826 25 1 16.4328 -2.8949 4.4495 26 6 7.6323 -1.4941 0.9813 27 8 2.3074 -1.0840 -0.0004 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.9821 2.1113 0.0004 32 1 5.6147 -1.0230 -0.5152 33 1 4.5762 -2.4686 -0.5152 34 1 4.4694 -2.7721 3.1084 35 1 3.2194 -2.1283 2.0170 36 1 4.1094 -3.6059 1.5775 37 1 6.5602 -3.7467 3.2081 38 1 6.5871 -1.9902 3.5653 39 1 8.8377 -3.8050 2.7197 40 1 8.8975 -2.3196 3.7067 41 1 11.1909 -3.4597 1.9826 42 1 11.2793 -1.9837 2.9736 43 1 16.7204 -1.8662 0.7157 44 1 7.4164 -0.4832 1.3272 45 1 7.7377 -1.5102 -0.1034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610874094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:45 Heat of formation + Delta-G solvation = 3.989373 kcal Electronic energy + Delta-G solvation = -26265.237675 eV Core-core repulsion = 22411.253753 eV Total energy + Delta-G solvation = -3853.983922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.65857 -40.05250 -38.24293 -36.08058 -35.02264 -33.03925 -32.41178 -31.28822 -29.97484 -29.05176 -28.28508 -26.21296 -25.47861 -24.37908 -23.14888 -22.43746 -21.24784 -20.54382 -19.30261 -17.76356 -17.41508 -17.31939 -16.74356 -16.56246 -15.50815 -15.26694 -15.17873 -14.93395 -14.78749 -14.52853 -14.12669 -13.95095 -13.75840 -13.57955 -13.54761 -13.31383 -12.85992 -12.82655 -12.62831 -12.54723 -12.47354 -12.14688 -11.80300 -11.69353 -11.54225 -11.21836 -11.14340 -11.02465 -11.01941 -10.77406 -10.75609 -9.80990 -9.39902 -9.10372 -9.04215 -8.86386 -8.48488 -8.21674 -6.48300 -6.19659 -3.90365 1.04574 2.20258 2.36849 2.86806 3.08313 3.24695 3.25347 3.30018 3.45902 3.66356 3.73508 4.10919 4.22369 4.34798 4.41887 4.58024 4.62484 4.74500 4.78110 4.89243 4.93463 4.99128 5.02270 5.06196 5.12172 5.15330 5.17334 5.25167 5.45516 5.48098 5.52803 5.55190 5.62852 5.67675 5.72547 5.79389 5.82525 5.96462 5.97238 6.15885 6.35115 6.41070 6.57155 7.45209 7.60782 7.67996 8.36723 8.57597 9.25290 10.87692 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034222 B = 0.001827 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.978834 B =15325.100868 C =15922.283619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.052 4.052 3 C -0.042 4.042 4 N -0.460 5.460 5 C 0.197 3.803 6 C 0.149 3.851 7 N -0.525 5.525 8 C 0.021 3.979 9 C 0.069 3.931 10 H 0.066 0.934 11 C -0.122 4.122 12 C 0.104 3.896 13 N -0.626 5.626 14 C 0.549 3.451 15 O -0.514 6.514 16 C -0.146 4.146 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.116 3.884 27 O -0.204 6.204 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.183 0.817 32 H 0.122 0.878 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.033 0.967 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.080 0.920 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.571 -1.726 2.416 32.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C -0.181 4.181 4 N -0.189 5.189 5 C -0.010 4.010 6 C 0.021 3.979 7 N -0.251 5.251 8 C -0.127 4.127 9 C -0.039 4.039 10 H 0.084 0.916 11 C -0.160 4.160 12 C -0.020 4.020 13 N -0.364 5.364 14 C 0.338 3.662 15 O -0.388 6.388 16 C -0.297 4.297 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.007 4.007 27 O -0.091 6.091 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.200 0.800 32 H 0.139 0.861 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -31.435 0.091 1.041 31.452 hybrid contribution -0.249 -2.361 1.565 2.844 sum -31.684 -2.270 2.606 31.872 Atomic orbital electron populations 1.20266 0.84011 1.04358 1.03786 1.23477 0.95014 0.84679 1.07316 1.23143 0.87828 1.00413 1.06697 1.70468 1.22821 1.09123 1.16481 1.25916 0.83675 0.90313 1.01100 1.20460 0.89976 0.96380 0.91121 1.61874 1.02380 1.46847 1.13997 1.22481 0.95060 0.95370 0.99800 1.22879 0.87529 0.95764 0.97739 0.91573 1.22714 0.94423 1.02966 0.95859 1.21978 0.94477 0.96572 0.88957 1.48410 1.05221 1.54417 1.28365 1.20023 0.81743 0.79770 0.84681 1.90716 1.83772 1.38819 1.25506 1.23506 0.99217 1.03594 1.03375 1.85409 0.91286 1.69894 1.36765 1.22822 0.93071 1.38457 1.14068 0.90981 1.24988 0.97556 0.95259 0.95736 1.70012 1.15558 1.38630 1.26054 0.86227 0.79361 0.79623 0.80296 1.19965 1.20809 1.19934 1.22151 0.82517 0.97499 0.98571 1.84388 1.17982 1.36730 1.70041 0.89800 0.88949 0.90413 0.80005 0.86051 0.91481 0.90327 0.91496 0.94889 0.90031 0.89286 0.91168 0.90913 0.89308 0.89252 0.92132 0.90192 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.43 36.00 0.38 0.13 16 2 C -0.05 -0.41 7.39 -35.69 -0.26 -0.68 16 3 C -0.04 -0.39 11.80 -17.77 -0.21 -0.60 16 4 N -0.46 -5.52 11.29 -11.10 -0.13 -5.65 16 5 C 0.20 2.06 6.92 -12.95 -0.09 1.97 16 6 C 0.15 1.29 5.50 -4.98 -0.03 1.27 16 7 N -0.53 -4.56 4.65 -233.61 -1.09 -5.65 16 8 C 0.02 0.15 9.12 60.07 0.55 0.69 16 9 C 0.07 0.62 2.72 -65.45 -0.18 0.44 16 10 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 11 C -0.12 -0.96 5.09 -24.90 -0.13 -1.08 16 12 C 0.10 1.10 6.48 -3.07 -0.02 1.08 16 13 N -0.63 -9.15 3.32 -170.39 -0.57 -9.71 16 14 C 0.55 10.79 7.87 -10.98 -0.09 10.70 16 15 O -0.51 -12.15 16.12 5.56 0.09 -12.06 16 16 C -0.15 -3.04 5.35 36.01 0.19 -2.84 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 22 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 26 C 0.12 1.44 5.63 -2.41 -0.01 1.42 16 27 O -0.20 -1.97 10.05 5.35 0.05 -1.92 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.18 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.12 1.09 6.95 -51.93 -0.36 0.73 16 33 H 0.07 0.47 8.12 -51.93 -0.42 0.04 16 34 H 0.08 0.48 6.99 -51.93 -0.36 0.12 16 35 H 0.07 0.53 6.60 -51.93 -0.34 0.18 16 36 H 0.03 0.20 8.14 -51.92 -0.42 -0.22 16 37 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 38 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 42 H 0.09 1.73 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.01 7.70 -51.93 -0.40 0.61 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -36.88 387.54 -8.92 -45.80 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -6.92 Total: -3.10 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 0.30 Total: -0.55 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -1.04 Total: -46.58 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.14 Total: -13.98 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.88 -8.92 -45.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610874094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.786 kcal (2) G-P(sol) polarization free energy of solvation -36.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds