Wall clock time and date at job start Tue Mar 31 2020 22:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34331 * 126.44457 * 2 1 4 4 N 1.34477 * 107.67265 * 179.76745 * 3 2 1 5 5 C 1.30257 * 108.69833 * 0.42330 * 4 3 2 6 6 C 1.50699 * 125.62052 * 179.84304 * 5 4 3 7 7 N 1.46899 * 109.47571 * 89.68803 * 6 5 4 8 8 C 1.46904 * 110.99919 * 66.04434 * 7 6 5 9 9 C 1.46899 * 111.00285 * 190.00138 * 7 6 5 10 10 H 1.08992 * 110.88271 * 303.88363 * 9 7 6 11 11 C 1.55153 * 111.00423 * 179.97438 * 9 7 6 12 12 C 1.54320 * 102.94298 * 206.42560 * 11 9 7 13 13 N 1.47017 * 107.27172 * 22.19309 * 12 11 9 14 14 C 1.34775 * 125.65188 * 181.02607 * 13 12 11 15 15 O 1.21282 * 120.00577 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99768 * 0.02562 * 14 13 12 17 17 S 1.81002 * 109.47349 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00182 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99976 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99949 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99849 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00065 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46819 * 59.99977 * 22 20 18 24 24 H 1.48494 * 109.47285 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47086 * 300.00273 * 22 20 18 26 26 C 1.47423 * 108.70278 * 1.28711 * 13 12 11 27 27 O 1.33973 * 108.76002 * 359.57167 * 5 4 3 28 28 H 1.08996 * 109.47285 * 269.97331 * 1 2 3 29 29 H 1.08999 * 109.47392 * 29.97942 * 1 2 3 30 30 H 1.09002 * 109.46753 * 149.97737 * 1 2 3 31 31 H 1.08004 * 126.16130 * 0.02562 * 3 2 1 32 32 H 1.09007 * 109.47019 * 329.69027 * 6 5 4 33 33 H 1.08998 * 109.47090 * 209.69138 * 6 5 4 34 34 H 1.08992 * 109.47079 * 183.95276 * 8 7 6 35 35 H 1.08994 * 109.47188 * 303.95855 * 8 7 6 36 36 H 1.09008 * 109.46435 * 63.95836 * 8 7 6 37 37 H 1.09001 * 110.72191 * 88.06075 * 11 9 7 38 38 H 1.08998 * 110.87582 * 324.85843 * 11 9 7 39 39 H 1.09008 * 109.88259 * 262.77746 * 12 11 9 40 40 H 1.09002 * 110.01568 * 141.68306 * 12 11 9 41 41 H 1.09005 * 109.46867 * 60.00428 * 16 14 13 42 42 H 1.09000 * 109.47235 * 300.00468 * 16 14 13 43 43 H 0.97005 * 119.99878 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.36738 * 94.48486 * 26 13 12 45 45 H 1.08997 * 110.36891 * 216.80151 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6479 0.0052 5 6 3.5765 -0.6547 -0.0008 6 6 4.8004 -1.5339 -0.0013 7 7 5.1986 -1.8199 1.3835 8 6 4.1837 -2.6340 2.0656 9 6 6.5142 -2.4718 1.4292 10 1 6.5192 -3.3794 0.8258 11 6 6.9351 -2.7733 2.8918 12 6 8.4763 -2.7809 2.8134 13 7 8.8567 -2.0056 1.6236 14 6 10.1164 -1.7928 1.1943 15 8 10.3136 -1.1340 0.1954 16 6 11.2800 -2.3736 1.9557 17 16 12.8271 -1.9149 1.1357 18 6 13.9853 -2.7028 2.2044 19 1 13.6369 -3.2591 3.0621 20 6 15.3454 -2.6094 1.9435 21 7 15.7699 -1.9318 0.8979 22 14 16.5734 -3.4441 3.0769 23 1 16.3119 -4.9058 3.0995 24 1 17.9514 -3.1958 2.5826 25 1 16.4328 -2.8949 4.4495 26 6 7.6323 -1.4941 0.9813 27 8 2.3074 -1.0840 -0.0004 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.9821 2.1113 0.0004 32 1 5.6147 -1.0230 -0.5152 33 1 4.5762 -2.4686 -0.5152 34 1 4.4694 -2.7721 3.1084 35 1 3.2194 -2.1283 2.0170 36 1 4.1094 -3.6059 1.5775 37 1 6.5602 -3.7467 3.2081 38 1 6.5871 -1.9902 3.5653 39 1 8.8377 -3.8050 2.7197 40 1 8.8975 -2.3196 3.7067 41 1 11.1909 -3.4597 1.9826 42 1 11.2793 -1.9837 2.9736 43 1 16.7204 -1.8662 0.7157 44 1 7.4164 -0.4832 1.3272 45 1 7.7377 -1.5102 -0.1034 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610874094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:44 Heat of formation + Delta-G solvation = -24.395457 kcal Electronic energy + Delta-G solvation = -26266.468534 eV Core-core repulsion = 22411.253753 eV Total energy + Delta-G solvation = -3855.214781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.34596 -41.17950 -39.37735 -37.10283 -35.75447 -34.58017 -33.64370 -32.37467 -31.06117 -29.71863 -29.42640 -27.66115 -26.80836 -25.20294 -24.11281 -23.10827 -21.95655 -21.29412 -20.69463 -19.58098 -18.24581 -18.12358 -17.90913 -17.56730 -16.87572 -16.68330 -16.36071 -15.93277 -15.83044 -15.56210 -15.49339 -14.98917 -14.58503 -14.42544 -14.34192 -14.08191 -13.85924 -13.80437 -13.76400 -13.31502 -13.25281 -13.16212 -13.14942 -12.85638 -12.77977 -12.61719 -12.47279 -12.30271 -11.95146 -11.89554 -11.74097 -11.50772 -11.12103 -10.99677 -10.28175 -9.75006 -9.70570 -9.48480 -8.67857 -8.33709 -6.12823 0.38323 1.23160 1.44419 1.44986 1.53898 1.55053 1.57995 1.68654 2.04339 2.28100 2.81158 3.00292 3.06673 3.20423 3.39603 3.62113 3.80747 3.86781 4.00088 4.04744 4.09965 4.17920 4.22841 4.32192 4.36019 4.44095 4.44988 4.47723 4.59450 4.65833 4.68083 4.70690 4.79403 4.86096 4.94724 4.99910 5.04998 5.14833 5.18337 5.29648 5.31906 5.41972 5.75843 5.88452 6.20177 6.36873 6.75449 7.06999 7.09555 8.75347 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.034222 B = 0.001827 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.978834 B =15325.100868 C =15922.283619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.044 4.044 3 C -0.068 4.068 4 N -0.500 5.500 5 C 0.186 3.814 6 C 0.150 3.850 7 N -0.536 5.536 8 C 0.024 3.976 9 C 0.084 3.916 10 H 0.079 0.921 11 C -0.108 4.108 12 C 0.092 3.908 13 N -0.616 5.616 14 C 0.546 3.454 15 O -0.568 6.568 16 C -0.118 4.118 17 S -0.153 6.153 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.112 3.888 27 O -0.210 6.210 28 H 0.098 0.902 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.201 0.799 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.068 0.932 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.779 -3.904 4.796 35.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.097 4.097 3 C -0.206 4.206 4 N -0.229 5.229 5 C -0.021 4.021 6 C 0.021 3.979 7 N -0.262 5.262 8 C -0.123 4.123 9 C -0.025 4.025 10 H 0.097 0.903 11 C -0.146 4.146 12 C -0.030 4.030 13 N -0.352 5.352 14 C 0.334 3.666 15 O -0.447 6.447 16 C -0.269 4.269 17 S 0.074 5.926 18 C -0.695 4.695 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.185 1.185 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.011 4.011 27 O -0.097 6.097 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.218 0.782 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -33.716 -2.111 3.460 33.959 hybrid contribution 0.228 -1.631 0.828 1.843 sum -33.488 -3.742 4.288 33.969 Atomic orbital electron populations 1.20500 0.80842 1.05766 1.05115 1.24275 0.96594 0.83835 1.05030 1.23558 0.87293 1.01884 1.07904 1.70426 1.24622 1.10244 1.17655 1.26121 0.84347 0.90179 1.01426 1.20474 0.89158 0.96811 0.91428 1.61803 1.02642 1.47645 1.14102 1.22492 0.93935 0.95468 1.00422 1.22731 0.86398 0.94719 0.98642 0.90278 1.22719 0.92034 1.04959 0.94882 1.22377 0.96708 0.96698 0.87219 1.48336 1.04142 1.53400 1.29280 1.19807 0.83112 0.79549 0.84086 1.90693 1.84819 1.41390 1.27763 1.23294 0.95698 1.04811 1.03138 1.85622 0.96300 1.71154 1.39501 1.23168 0.93565 1.38495 1.14231 0.89778 1.26151 0.99832 0.95757 0.97398 1.70187 1.16081 1.40283 1.28237 0.84986 0.76105 0.78796 0.77989 1.18523 1.20428 1.18631 1.22259 0.82929 0.98148 0.97769 1.84394 1.17895 1.37355 1.70047 0.88322 0.86936 0.89580 0.78172 0.87261 0.89612 0.88973 0.92530 0.93491 0.86657 0.89035 0.89611 0.90182 0.87212 0.87524 0.91991 0.91365 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 71.23 0.74 0.41 16 2 C -0.04 -0.66 7.39 24.79 0.18 -0.47 16 3 C -0.07 -1.25 11.80 83.39 0.98 -0.27 16 4 N -0.50 -12.26 11.29 -303.82 -3.43 -15.69 16 5 C 0.19 3.88 6.92 88.34 0.61 4.49 16 6 C 0.15 2.53 5.50 85.56 0.47 3.00 16 7 N -0.54 -8.44 4.65 -893.00 -4.15 -12.59 16 8 C 0.02 0.27 9.12 127.69 1.16 1.44 16 9 C 0.08 1.31 2.72 46.38 0.13 1.43 16 10 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 11 C -0.11 -1.31 5.09 31.78 0.16 -1.15 16 12 C 0.09 1.68 6.48 86.73 0.56 2.24 16 13 N -0.62 -17.51 3.32 -811.37 -2.70 -20.21 16 14 C 0.55 21.71 7.87 87.66 0.69 22.40 16 15 O -0.57 -28.13 16.12 -3.04 -0.05 -28.18 16 16 C -0.12 -4.88 5.35 71.24 0.38 -4.49 16 17 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 18 C -0.55 -31.50 9.50 67.96 0.65 -30.86 16 19 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 20 C 0.01 0.77 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 22 Si 1.00 43.68 29.55 68.60 2.03 45.70 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 26 C 0.11 2.76 5.63 86.93 0.49 3.25 16 27 O -0.21 -3.87 10.05 -3.76 -0.04 -3.91 16 28 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.11 2.07 6.95 -2.38 -0.02 2.05 16 33 H 0.09 1.08 8.12 -2.39 -0.02 1.07 16 34 H 0.09 0.79 6.99 -2.39 -0.02 0.77 16 35 H 0.06 0.78 6.60 -2.39 -0.02 0.77 16 36 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.12 0.74 8.10 -2.39 -0.02 0.72 16 38 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 39 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 42 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 43 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 1.73 7.70 -2.39 -0.02 1.71 16 Total: -1.00 -84.46 387.54 -0.55 -85.01 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.98 Total: 13.32 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 7.68 Total: 2.66 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -9.99 Total: -104.75 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.09 Total: -32.09 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -84.46 -0.55 -85.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610874094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.615 kcal (2) G-P(sol) polarization free energy of solvation -84.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds