Wall clock time and date at job start Tue Mar 31 2020 22:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33816 * 122.44886 * 2 1 4 4 S 1.70618 * 110.95422 * 179.75671 * 3 2 1 5 5 C 1.75823 * 91.56558 * 0.24465 * 4 3 2 6 6 C 1.46586 * 125.46150 * 179.97438 * 5 4 3 7 7 O 1.21701 * 119.99959 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99714 * 0.02585 * 6 5 4 9 9 N 1.40105 * 119.99801 * 180.02562 * 8 6 5 10 10 C 1.34777 * 119.99801 * 179.97438 * 9 8 6 11 11 O 1.21586 * 119.99651 * 180.02562 * 10 9 8 12 12 N 1.34780 * 120.00024 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99762 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.46948 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47393 * 300.00219 * 14 13 12 16 16 C 1.53003 * 109.47210 * 59.99831 * 14 13 12 17 17 C 1.53001 * 109.47310 * 179.97438 * 14 13 12 18 18 C 1.50698 * 109.47455 * 180.02562 * 17 14 13 19 19 H 1.08005 * 119.99454 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00423 * 180.02562 * 18 17 14 21 21 N 1.31520 * 119.99649 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00281 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47242 * 90.00291 * 22 20 18 24 24 H 1.48504 * 109.47582 * 210.00029 * 22 20 18 25 25 H 1.48500 * 109.47382 * 330.00078 * 22 20 18 26 26 C 1.36649 * 109.08361 * 359.97438 * 5 4 3 27 27 H 1.09002 * 109.47232 * 90.02561 * 1 2 3 28 28 H 1.09003 * 109.47168 * 210.02497 * 1 2 3 29 29 H 1.09003 * 109.47109 * 330.02318 * 1 2 3 30 30 H 1.08002 * 124.52447 * 0.02726 * 3 2 1 31 31 H 0.97001 * 120.00268 * 359.97438 * 8 6 5 32 32 H 0.97001 * 119.99931 * 359.97438 * 9 8 6 33 33 H 0.96994 * 120.00102 * 0.02562 * 12 10 9 34 34 H 1.09004 * 109.47292 * 299.99749 * 13 12 10 35 35 H 1.08994 * 109.47075 * 60.00352 * 13 12 10 36 36 H 1.08995 * 109.47008 * 59.99832 * 15 14 13 37 37 H 1.08997 * 109.47276 * 180.02562 * 15 14 13 38 38 H 1.09002 * 109.46424 * 299.99765 * 15 14 13 39 39 H 1.09004 * 109.47181 * 60.00306 * 16 14 13 40 40 H 1.09006 * 109.47519 * 179.97438 * 16 14 13 41 41 H 1.08995 * 109.47315 * 300.00244 * 16 14 13 42 42 H 1.08994 * 109.46970 * 300.00201 * 17 14 13 43 43 H 1.08994 * 109.46678 * 60.00226 * 17 14 13 44 44 H 0.97001 * 119.99553 * 180.02562 * 21 20 18 45 45 H 1.08002 * 123.35024 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2249 1.1292 0.0000 4 16 3.8969 0.7892 0.0068 5 6 3.5937 -0.9426 0.0021 6 6 4.6232 -1.9862 0.0042 7 8 4.3002 -3.1596 0.0001 8 7 5.9273 -1.6462 0.0106 9 7 6.9113 -2.6436 0.0120 10 6 8.2154 -2.3036 0.0179 11 8 9.0693 -3.1692 0.0186 12 7 8.5730 -1.0041 0.0219 13 6 9.9906 -0.6346 0.0277 14 6 10.1202 0.8899 0.0320 15 6 9.4491 1.4624 -1.2181 16 6 9.4404 1.4560 1.2804 17 6 11.6007 1.2759 0.0388 18 6 11.7284 2.7775 0.0436 19 1 10.8421 3.3948 0.0417 20 6 12.9765 3.3633 0.0496 21 7 14.0557 2.6116 0.0504 22 14 13.1347 5.2245 0.0549 23 1 13.1718 5.7142 1.4564 24 1 14.3873 5.6169 -0.6397 25 1 11.9710 5.8223 -0.6477 26 6 2.2446 -1.1601 -0.0037 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 1.8025 2.1232 0.0004 31 1 6.1847 -0.7110 0.0135 32 1 6.6538 -3.5788 0.0087 33 1 7.8918 -0.3136 0.0209 34 1 10.4687 -1.0420 0.9186 35 1 10.4750 -1.0382 -0.8614 36 1 8.3944 1.1875 -1.2224 37 1 9.5418 2.5484 -1.2152 38 1 9.9334 1.0591 -2.1074 39 1 9.9186 1.0483 2.1710 40 1 9.5331 2.5422 1.2837 41 1 8.3857 1.1811 1.2761 42 1 12.0784 0.8682 0.9295 43 1 12.0853 0.8726 -0.8503 44 1 14.9338 3.0237 0.0549 45 1 1.8020 -2.1452 -0.0070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858459102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:14 Heat of formation + Delta-G solvation = -10.493701 kcal Electronic energy + Delta-G solvation = -26672.050087 eV Core-core repulsion = 22817.438131 eV Total energy + Delta-G solvation = -3854.611956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77228 -39.65467 -38.46037 -37.29517 -35.89214 -33.63422 -32.28551 -31.99585 -30.56787 -28.27008 -27.17340 -26.60362 -26.26622 -24.98107 -23.10116 -21.62494 -21.10108 -19.83662 -19.49070 -18.64903 -18.10791 -17.05547 -16.36327 -16.18675 -16.02041 -15.57668 -15.21242 -15.11931 -14.51879 -14.34453 -14.32494 -14.08781 -13.82192 -13.63525 -13.18046 -12.84300 -12.70899 -12.56620 -12.44076 -12.35628 -12.11008 -11.62705 -11.41814 -11.22248 -11.07436 -10.91842 -10.81249 -10.70349 -10.48675 -10.38065 -10.31395 -9.95859 -9.41052 -9.28691 -9.05770 -8.98736 -8.91127 -8.49825 -8.39704 -6.03694 -4.05320 -0.00267 0.95351 1.34517 1.54185 1.83397 2.64092 2.99301 3.11882 3.27930 3.35437 3.36424 3.97124 4.41398 4.47338 4.61786 4.70031 4.82097 5.08003 5.16000 5.30821 5.31743 5.35305 5.44569 5.54373 5.63912 5.80555 5.89010 6.03797 6.05716 6.11213 6.17180 6.30658 6.39778 6.48899 6.54536 6.65742 6.97010 6.99182 7.00043 7.04838 7.39873 7.59471 7.71004 7.94372 7.99535 8.35041 8.43320 8.99255 9.57991 11.07664 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.002572 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.009375 B =10884.984825 C =12763.325246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.120 4.120 3 C -0.225 4.225 4 S 0.211 5.789 5 C -0.268 4.268 6 C 0.596 3.404 7 O -0.524 6.524 8 N -0.524 5.524 9 N -0.533 5.533 10 C 0.709 3.291 11 O -0.568 6.568 12 N -0.734 5.734 13 C 0.142 3.858 14 C -0.073 4.073 15 C -0.127 4.127 16 C -0.128 4.128 17 C 0.036 3.964 18 C -0.512 4.512 19 H 0.059 0.941 20 C 0.056 3.944 21 N -0.893 5.893 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.275 1.275 26 C -0.040 4.040 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.172 0.828 31 H 0.418 0.582 32 H 0.442 0.558 33 H 0.388 0.612 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.069 0.931 41 H 0.025 0.975 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.260 0.740 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.900 -2.764 -0.121 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.133 4.133 3 C -0.362 4.362 4 S 0.480 5.520 5 C -0.390 4.390 6 C 0.383 3.617 7 O -0.400 6.400 8 N -0.275 5.275 9 N -0.292 5.292 10 C 0.409 3.591 11 O -0.441 6.441 12 N -0.391 5.391 13 C 0.020 3.980 14 C -0.074 4.074 15 C -0.185 4.185 16 C -0.185 4.185 17 C -0.001 4.001 18 C -0.550 4.550 19 H 0.078 0.922 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.074 4.074 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.190 0.810 31 H 0.259 0.741 32 H 0.288 0.712 33 H 0.223 0.777 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -24.790 -3.163 -0.118 24.991 hybrid contribution -1.442 0.770 0.001 1.635 sum -26.232 -2.393 -0.117 26.341 Atomic orbital electron populations 1.20529 0.89062 1.03112 1.02649 1.18798 0.98181 0.91332 1.04963 1.25219 0.98254 1.03688 1.09087 1.83209 1.04340 0.97181 1.67306 1.24172 0.97348 0.97124 1.20333 1.16847 0.79773 0.88162 0.76954 1.90871 1.80882 1.17898 1.50314 1.44642 1.01045 1.04761 1.77003 1.44666 0.97794 1.04452 1.82249 1.15808 0.80552 0.84322 0.78445 1.91040 1.45739 1.48802 1.58526 1.45456 1.10399 1.04467 1.78759 1.21644 0.77627 0.96475 1.02299 1.20943 1.00992 0.90332 0.95100 1.21774 0.96755 1.02533 0.97416 1.21777 0.96727 1.02544 0.97433 1.19088 0.86765 0.96598 0.97657 1.21154 0.91911 0.91469 1.50486 0.92247 1.25015 0.96119 0.97841 0.95531 1.69964 0.97704 1.34906 1.50670 0.86647 0.77511 0.86098 0.78025 1.20782 1.21346 1.19955 1.20663 0.90559 1.00249 0.95917 0.90958 0.91120 0.91312 0.81035 0.74089 0.71232 0.77712 0.91419 0.91414 0.95622 0.91199 0.93135 0.93133 0.91204 0.95622 0.96210 0.96200 0.92999 0.82623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.13 36.00 0.36 -0.03 16 2 C -0.12 -0.77 5.78 -106.46 -0.62 -1.39 16 3 C -0.22 -1.33 10.67 29.18 0.31 -1.02 16 4 S 0.21 1.38 22.16 -107.50 -2.38 -1.00 16 5 C -0.27 -2.38 6.45 -36.79 -0.24 -2.62 16 6 C 0.60 6.63 7.90 -12.89 -0.10 6.52 16 7 O -0.52 -7.30 16.68 5.19 0.09 -7.22 16 8 N -0.52 -5.46 6.25 30.24 0.19 -5.27 16 9 N -0.53 -6.69 6.26 27.63 0.17 -6.52 16 10 C 0.71 10.75 8.68 -86.91 -0.75 10.00 16 11 O -0.57 -10.80 17.18 5.29 0.09 -10.71 16 12 N -0.73 -10.21 4.92 -65.23 -0.32 -10.53 16 13 C 0.14 2.39 4.56 -4.04 -0.02 2.37 16 14 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 15 C -0.13 -2.07 8.05 37.16 0.30 -1.77 16 16 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 17 C 0.04 0.86 4.04 -27.88 -0.11 0.74 16 18 C -0.51 -13.06 7.65 -34.44 -0.26 -13.33 16 19 H 0.06 1.45 5.68 -52.48 -0.30 1.15 16 20 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 21 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 22 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C -0.04 -0.32 9.80 -40.43 -0.40 -0.71 16 27 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.26 8.13 -51.93 -0.42 -0.16 16 29 H 0.07 0.23 8.12 -51.93 -0.42 -0.20 16 30 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 31 H 0.42 3.58 5.81 -182.59 -1.06 2.51 16 32 H 0.44 5.52 8.10 -182.59 -1.48 4.04 16 33 H 0.39 4.43 4.08 -40.82 -0.17 4.27 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.02 0.32 6.86 -51.93 -0.36 -0.03 16 37 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.22 6.62 -51.93 -0.34 0.87 16 41 H 0.02 0.32 6.86 -51.93 -0.36 -0.03 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -32.29 383.65 -10.26 -42.55 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -8.19 Total: 5.30 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.41 Total: -2.95 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.78 Total: -47.38 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.18 Total: -17.93 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.38 Total: -1.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.29 -10.26 -42.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858459102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.061 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds