Wall clock time and date at job start Tue Mar 31 2020 22:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33816 * 122.44886 * 2 1 4 4 S 1.70618 * 110.95422 * 179.75671 * 3 2 1 5 5 C 1.75823 * 91.56558 * 0.24465 * 4 3 2 6 6 C 1.46586 * 125.46150 * 179.97438 * 5 4 3 7 7 O 1.21701 * 119.99959 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99714 * 0.02585 * 6 5 4 9 9 N 1.40105 * 119.99801 * 180.02562 * 8 6 5 10 10 C 1.34777 * 119.99801 * 179.97438 * 9 8 6 11 11 O 1.21586 * 119.99651 * 180.02562 * 10 9 8 12 12 N 1.34780 * 120.00024 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99762 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.46948 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47393 * 300.00219 * 14 13 12 16 16 C 1.53003 * 109.47210 * 59.99831 * 14 13 12 17 17 C 1.53001 * 109.47310 * 179.97438 * 14 13 12 18 18 C 1.50698 * 109.47455 * 180.02562 * 17 14 13 19 19 H 1.08005 * 119.99454 * 359.97438 * 18 17 14 20 20 C 1.37873 * 120.00423 * 180.02562 * 18 17 14 21 21 N 1.31520 * 119.99649 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00281 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47242 * 90.00291 * 22 20 18 24 24 H 1.48504 * 109.47582 * 210.00029 * 22 20 18 25 25 H 1.48500 * 109.47382 * 330.00078 * 22 20 18 26 26 C 1.36649 * 109.08361 * 359.97438 * 5 4 3 27 27 H 1.09002 * 109.47232 * 90.02561 * 1 2 3 28 28 H 1.09003 * 109.47168 * 210.02497 * 1 2 3 29 29 H 1.09003 * 109.47109 * 330.02318 * 1 2 3 30 30 H 1.08002 * 124.52447 * 0.02726 * 3 2 1 31 31 H 0.97001 * 120.00268 * 359.97438 * 8 6 5 32 32 H 0.97001 * 119.99931 * 359.97438 * 9 8 6 33 33 H 0.96994 * 120.00102 * 0.02562 * 12 10 9 34 34 H 1.09004 * 109.47292 * 299.99749 * 13 12 10 35 35 H 1.08994 * 109.47075 * 60.00352 * 13 12 10 36 36 H 1.08995 * 109.47008 * 59.99832 * 15 14 13 37 37 H 1.08997 * 109.47276 * 180.02562 * 15 14 13 38 38 H 1.09002 * 109.46424 * 299.99765 * 15 14 13 39 39 H 1.09004 * 109.47181 * 60.00306 * 16 14 13 40 40 H 1.09006 * 109.47519 * 179.97438 * 16 14 13 41 41 H 1.08995 * 109.47315 * 300.00244 * 16 14 13 42 42 H 1.08994 * 109.46970 * 300.00201 * 17 14 13 43 43 H 1.08994 * 109.46678 * 60.00226 * 17 14 13 44 44 H 0.97001 * 119.99553 * 180.02562 * 21 20 18 45 45 H 1.08002 * 123.35024 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2249 1.1292 0.0000 4 16 3.8969 0.7892 0.0068 5 6 3.5937 -0.9426 0.0021 6 6 4.6232 -1.9862 0.0042 7 8 4.3002 -3.1596 0.0001 8 7 5.9273 -1.6462 0.0106 9 7 6.9113 -2.6436 0.0120 10 6 8.2154 -2.3036 0.0179 11 8 9.0693 -3.1692 0.0186 12 7 8.5730 -1.0041 0.0219 13 6 9.9906 -0.6346 0.0277 14 6 10.1202 0.8899 0.0320 15 6 9.4491 1.4624 -1.2181 16 6 9.4404 1.4560 1.2804 17 6 11.6007 1.2759 0.0388 18 6 11.7284 2.7775 0.0436 19 1 10.8421 3.3948 0.0417 20 6 12.9765 3.3633 0.0496 21 7 14.0557 2.6116 0.0504 22 14 13.1347 5.2245 0.0549 23 1 13.1718 5.7142 1.4564 24 1 14.3873 5.6169 -0.6397 25 1 11.9710 5.8223 -0.6477 26 6 2.2446 -1.1601 -0.0037 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 1.8025 2.1232 0.0004 31 1 6.1847 -0.7110 0.0135 32 1 6.6538 -3.5788 0.0087 33 1 7.8918 -0.3136 0.0209 34 1 10.4687 -1.0420 0.9186 35 1 10.4750 -1.0382 -0.8614 36 1 8.3944 1.1875 -1.2224 37 1 9.5418 2.5484 -1.2152 38 1 9.9334 1.0591 -2.1074 39 1 9.9186 1.0483 2.1710 40 1 9.5331 2.5422 1.2837 41 1 8.3857 1.1811 1.2761 42 1 12.0784 0.8682 0.9295 43 1 12.0853 0.8726 -0.8503 44 1 14.9338 3.0237 0.0549 45 1 1.8020 -2.1452 -0.0070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858459102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:13 Heat of formation + Delta-G solvation = -31.887877 kcal Electronic energy + Delta-G solvation = -26672.977808 eV Core-core repulsion = 22817.438131 eV Total energy + Delta-G solvation = -3855.539677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84548 -40.66882 -39.09490 -38.73023 -36.97022 -35.23755 -33.88830 -32.97394 -31.29255 -29.06220 -28.68114 -27.93352 -27.62958 -25.69071 -24.92252 -22.45719 -22.30712 -20.88832 -20.12532 -19.54461 -19.35181 -18.33953 -17.99330 -17.11328 -16.93206 -16.74235 -16.42876 -16.25475 -15.98284 -15.59591 -15.29403 -14.85191 -14.75412 -14.68989 -14.35145 -14.06314 -13.90643 -13.88836 -13.18908 -13.00147 -12.87036 -12.79008 -12.71095 -12.67748 -12.52922 -12.30783 -12.21300 -12.00929 -11.95534 -11.86065 -11.52181 -11.51302 -10.98875 -10.83538 -10.47813 -10.36676 -9.98622 -9.54721 -9.34314 -8.10598 -6.17871 -0.59222 0.41326 0.53729 0.88900 1.23073 1.45532 1.45952 1.55825 1.77702 1.82392 2.02945 2.47368 3.19685 3.24476 3.76075 3.94201 4.07027 4.10446 4.16573 4.23017 4.38641 4.67711 4.71618 4.73739 4.74880 4.77367 4.90442 4.97601 5.06695 5.07093 5.15968 5.17159 5.29707 5.37160 5.40962 5.47447 5.48956 5.55329 5.56223 5.61022 5.84075 5.93721 6.03657 6.33540 6.42156 6.97135 6.98703 7.24161 7.49844 9.01817 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.002572 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.009375 B =10884.984825 C =12763.325246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.131 4.131 3 C -0.216 4.216 4 S 0.240 5.760 5 C -0.298 4.298 6 C 0.599 3.401 7 O -0.559 6.559 8 N -0.515 5.515 9 N -0.526 5.526 10 C 0.713 3.287 11 O -0.610 6.610 12 N -0.719 5.719 13 C 0.155 3.845 14 C -0.064 4.064 15 C -0.124 4.124 16 C -0.125 4.125 17 C 0.039 3.961 18 C -0.510 4.510 19 H 0.076 0.924 20 C -0.007 4.007 21 N -0.939 5.939 22 Si 0.957 3.043 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.257 1.257 26 C -0.041 4.041 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.198 0.802 31 H 0.428 0.572 32 H 0.443 0.557 33 H 0.403 0.597 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.060 0.940 41 H 0.068 0.932 42 H -0.013 1.013 43 H -0.012 1.012 44 H 0.258 0.742 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.187 -0.382 -0.130 30.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.144 4.144 3 C -0.354 4.354 4 S 0.510 5.490 5 C -0.420 4.420 6 C 0.387 3.613 7 O -0.437 6.437 8 N -0.267 5.267 9 N -0.282 5.282 10 C 0.412 3.588 11 O -0.486 6.486 12 N -0.377 5.377 13 C 0.031 3.969 14 C -0.065 4.065 15 C -0.182 4.182 16 C -0.182 4.182 17 C 0.002 3.998 18 C -0.548 4.548 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.580 5.580 22 Si 0.783 3.217 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.181 1.181 26 C -0.076 4.076 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.215 0.785 31 H 0.271 0.729 32 H 0.289 0.711 33 H 0.241 0.759 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.006 0.994 43 H 0.006 0.994 44 H 0.067 0.933 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -28.139 -0.736 -0.127 28.149 hybrid contribution -0.516 0.022 0.004 0.516 sum -28.655 -0.714 -0.123 28.664 Atomic orbital electron populations 1.20583 0.87568 1.03883 1.03280 1.18980 0.99316 0.90846 1.05214 1.25622 0.97961 1.04725 1.07105 1.83033 1.04738 0.94707 1.66541 1.24033 0.96913 0.98181 1.22860 1.17206 0.79946 0.88268 0.75847 1.90851 1.81369 1.19541 1.51961 1.44635 1.00418 1.04612 1.77045 1.44412 0.97537 1.05151 1.81099 1.15759 0.80867 0.84009 0.78156 1.91017 1.47367 1.49972 1.60245 1.45067 1.09480 1.04591 1.78518 1.21271 0.79032 0.95653 1.00967 1.20731 0.97420 0.91020 0.97312 1.21729 0.99082 1.01646 0.95699 1.21733 0.99040 1.01693 0.95708 1.18972 0.90534 0.95771 0.94567 1.21592 0.92232 0.92511 1.48431 0.90626 1.25942 0.96047 1.02679 0.95659 1.70127 0.98194 1.36971 1.52726 0.85565 0.77625 0.80415 0.78138 1.20304 1.21953 1.18104 1.20846 0.90583 1.00923 0.95233 0.90364 0.90947 0.90029 0.78492 0.72884 0.71071 0.75896 0.92924 0.92916 0.91277 0.92110 0.94270 0.94278 0.92071 0.91281 0.99422 0.99406 0.93306 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.13 71.23 0.72 0.17 16 2 C -0.13 -1.35 5.78 -21.05 -0.12 -1.47 16 3 C -0.22 -1.78 10.67 66.81 0.71 -1.07 16 4 S 0.24 2.37 22.16 -56.49 -1.25 1.11 16 5 C -0.30 -4.75 6.45 24.08 0.16 -4.60 16 6 C 0.60 12.60 7.90 86.42 0.68 13.28 16 7 O -0.56 -15.46 16.68 -4.35 -0.07 -15.53 16 8 N -0.52 -9.78 6.25 -176.45 -1.10 -10.88 16 9 N -0.53 -12.66 6.26 -184.74 -1.16 -13.81 16 10 C 0.71 21.04 8.68 179.05 1.55 22.59 16 11 O -0.61 -23.42 17.18 -3.99 -0.07 -23.49 16 12 N -0.72 -18.79 4.92 -478.54 -2.36 -21.14 16 13 C 0.15 5.19 4.56 86.38 0.39 5.58 16 14 C -0.06 -2.24 0.54 -52.18 -0.03 -2.26 16 15 C -0.12 -3.75 8.05 71.98 0.58 -3.17 16 16 C -0.12 -3.75 8.05 71.98 0.58 -3.17 16 17 C 0.04 1.90 4.04 29.85 0.12 2.02 16 18 C -0.51 -26.03 7.65 25.60 0.20 -25.83 16 19 H 0.08 3.56 5.68 -2.91 -0.02 3.54 16 20 C -0.01 -0.36 5.46 84.65 0.46 0.11 16 21 N -0.94 -55.92 13.29 21.45 0.28 -55.64 16 22 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 C -0.04 -0.59 9.80 21.72 0.21 -0.37 16 27 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.07 0.40 8.13 -2.39 -0.02 0.38 16 29 H 0.08 0.27 8.12 -2.39 -0.02 0.25 16 30 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 31 H 0.43 6.04 5.81 -213.32 -1.24 4.80 16 32 H 0.44 10.92 8.10 -213.32 -1.73 9.20 16 33 H 0.40 7.86 4.08 -92.71 -0.38 7.48 16 34 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.47 6.86 -2.39 -0.02 1.45 16 37 H 0.06 1.96 6.62 -2.39 -0.02 1.95 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.06 1.97 6.62 -2.38 -0.02 1.95 16 41 H 0.07 1.47 6.86 -2.39 -0.02 1.45 16 42 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 43 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -72.69 383.65 0.22 -72.47 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -2.30 Total: 20.87 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.22 Total: 1.79 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -4.33 Total: -101.47 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.14 Total: -39.02 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.25 Total: 1.11 kcal Total: -72.69 0.22 -72.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858459102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.579 kcal (2) G-P(sol) polarization free energy of solvation -72.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds