Wall clock time and date at job start Tue Mar 31 2020 22:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.47200 * 109.55146 * 2 1 4 4 N 2.60801 * 109.55326 * 0.02562 * 2 1 3 5 5 C 1.52876 * 109.58584 * 240.00657 * 2 1 3 6 6 N 1.47149 * 108.60957 * 187.92108 * 5 2 1 7 7 C 1.34771 * 120.98440 * 230.49990 * 6 5 2 8 8 O 1.21674 * 119.99966 * 7.19058 * 7 6 5 9 9 C 1.46889 * 120.00421 * 187.18395 * 7 6 5 10 10 C 1.36120 * 125.43097 * 25.50994 * 9 7 6 11 11 C 1.41706 * 107.74949 * 180.28169 * 10 9 7 12 12 C 1.40020 * 133.34753 * 180.50313 * 11 10 9 13 13 C 1.36580 * 119.82679 * 179.58018 * 12 11 10 14 14 C 1.38853 * 120.60157 * 359.71219 * 13 12 11 15 15 C 1.37845 * 120.63190 * 359.97438 * 14 13 12 16 16 C 1.39080 * 119.81525 * 0.02562 * 15 14 13 17 17 N 1.37841 * 133.16262 * 179.97438 * 16 15 14 18 18 C 1.36892 * 125.62051 * 0.03534 * 17 16 15 19 19 H 1.07998 * 119.99277 * 134.75222 * 18 17 16 20 20 C 1.39006 * 120.00099 * 314.74852 * 18 17 16 21 21 N 1.31348 * 119.99564 * 169.74529 * 20 18 17 22 22 Si 1.86794 * 120.00110 * 349.74790 * 20 18 17 23 23 H 1.48500 * 109.47610 * 94.49849 * 22 20 18 24 24 H 1.48499 * 109.47175 * 214.49829 * 22 20 18 25 25 H 1.48500 * 109.47217 * 334.49652 * 22 20 18 26 26 C 1.47152 * 118.03168 * 50.22756 * 6 5 2 27 27 C 1.53289 * 108.38744 * 309.71330 * 26 6 5 28 28 O 1.42964 * 109.22009 * 52.30658 * 27 26 6 29 29 H 1.08994 * 109.47409 * 299.87350 * 1 2 3 30 30 H 1.09002 * 109.46852 * 59.87846 * 1 2 3 31 31 H 1.09004 * 109.47033 * 179.87216 * 1 2 3 32 32 H 1.09003 * 109.61972 * 68.10221 * 5 2 1 33 33 H 1.08995 * 109.52581 * 307.68954 * 5 2 1 34 34 H 1.08002 * 126.13168 * 0.02562 * 10 9 7 35 35 H 1.07994 * 120.08880 * 359.29377 * 12 11 10 36 36 H 1.07997 * 119.69872 * 179.68662 * 13 12 11 37 37 H 1.07998 * 119.68418 * 179.97438 * 14 13 12 38 38 H 1.08002 * 120.08863 * 180.02562 * 15 14 13 39 39 H 0.97001 * 119.99535 * 180.02562 * 21 20 18 40 40 H 1.09004 * 109.68005 * 69.44113 * 26 6 5 41 41 H 1.09006 * 109.67808 * 189.98904 * 26 6 5 42 42 H 1.08995 * 109.51288 * 172.22351 * 27 26 6 43 43 H 1.08997 * 109.51379 * 292.38137 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0227 1.3871 0.0000 4 7 2.4029 2.4576 0.0011 5 6 2.0425 -0.7200 -1.2474 6 7 3.5013 -0.8762 -1.1335 7 6 4.3194 -0.5034 -2.1375 8 8 3.8699 0.0888 -3.1006 9 6 5.7540 -0.8118 -2.0690 10 6 6.3082 -1.8354 -1.3634 11 6 7.7113 -1.7820 -1.5547 12 6 8.7748 -2.5674 -1.0934 13 6 10.0538 -2.2648 -1.4649 14 6 10.3105 -1.1872 -2.3022 15 6 9.2795 -0.4034 -2.7743 16 6 7.9687 -0.6919 -2.4098 17 7 6.7564 -0.1088 -2.7102 18 6 6.5751 0.9860 -3.5118 19 1 5.7936 0.9859 -4.2572 20 6 7.3968 2.0977 -3.3662 21 7 7.3608 3.0620 -4.2573 22 14 8.5521 2.2202 -1.9035 23 1 9.8923 1.7083 -2.2869 24 1 8.6666 3.6391 -1.4807 25 1 8.0158 1.4107 -0.7800 26 6 4.0407 -1.4457 0.1115 27 6 3.4313 -0.6854 1.2949 28 8 2.0075 -0.6763 1.1655 29 1 -0.3634 0.5118 0.8910 30 1 -0.3633 0.5157 -0.8889 31 1 -0.3633 -1.0277 -0.0023 32 1 1.8044 -0.1315 -2.1335 33 1 1.5729 -1.7009 -1.3206 34 1 5.7747 -2.5565 -0.7619 35 1 8.5847 -3.4074 -0.4419 36 1 10.8729 -2.8689 -1.1038 37 1 11.3276 -0.9611 -2.5863 38 1 9.4891 0.4324 -3.4254 39 1 7.9345 3.8376 -4.1560 40 1 3.7757 -2.5010 0.1774 41 1 5.1253 -1.3375 0.1249 42 1 3.7090 -1.1785 2.2263 43 1 3.8030 0.3393 1.2995 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887674814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:28 Heat of formation + Delta-G solvation = 19.854463 kcal Electronic energy + Delta-G solvation = -30108.074614 eV Core-core repulsion = 26119.334702 eV Total energy + Delta-G solvation = -3988.739912 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.67832 -41.50525 -39.70321 -37.73154 -37.49024 -36.24297 -35.37590 -34.36097 -33.18490 -30.90711 -30.36807 -29.92057 -27.73571 -26.74636 -24.94344 -24.78618 -23.66123 -22.77598 -21.75330 -20.80925 -19.90509 -19.13208 -18.16703 -17.84230 -17.55451 -17.36917 -16.77530 -16.47154 -16.31504 -15.98765 -15.66294 -15.50615 -15.26131 -15.02681 -14.88293 -14.82769 -14.59676 -14.41408 -14.04575 -13.94553 -13.84782 -13.32707 -13.25872 -13.15555 -12.96908 -12.80546 -12.72697 -12.69051 -12.48389 -12.37315 -12.00912 -11.89896 -11.59847 -11.52457 -11.31616 -10.97640 -10.38714 -9.77135 -9.05992 -8.88352 -8.62240 -6.64633 -0.03492 0.88555 1.01437 1.05605 1.16720 1.23052 1.32541 1.48375 1.60225 1.90034 2.23099 2.48968 2.60076 2.62340 2.70871 3.12335 3.35459 3.54632 3.85803 3.87890 3.99816 4.11189 4.26935 4.27383 4.36680 4.40608 4.51775 4.59807 4.64972 4.66955 4.77748 4.84029 4.85227 4.86513 4.97126 5.04814 5.23914 5.24720 5.32066 5.39176 5.65720 5.75961 5.77383 5.80229 5.95651 6.03903 6.22575 6.24491 6.37842 6.74390 7.04425 7.14182 8.22212 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.004689 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.390369 B = 5970.376802 C = 7036.241229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.209 3.791 3 C 0.196 3.804 4 N -0.469 5.469 5 C 0.092 3.908 6 N -0.610 5.610 7 C 0.584 3.416 8 O -0.574 6.574 9 C -0.042 4.042 10 C -0.164 4.164 11 C -0.138 4.138 12 C -0.062 4.062 13 C -0.154 4.154 14 C -0.107 4.107 15 C -0.161 4.161 16 C 0.035 3.965 17 N -0.295 5.295 18 C -0.352 4.352 19 H 0.075 0.925 20 C 0.035 3.965 21 N -0.883 5.883 22 Si 0.933 3.067 23 H -0.212 1.212 24 H -0.287 1.287 25 H -0.271 1.271 26 C 0.049 3.951 27 C 0.039 3.961 28 O -0.339 6.339 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.197 0.803 35 H 0.162 0.838 36 H 0.160 0.840 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.289 0.711 40 H 0.133 0.867 41 H 0.112 0.888 42 H 0.161 0.839 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.433 -16.659 15.140 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.165 3.835 3 C -0.123 4.123 4 N -0.147 5.147 5 C -0.031 4.031 6 N -0.344 5.344 7 C 0.374 3.626 8 O -0.454 6.454 9 C -0.156 4.156 10 C -0.190 4.190 11 C -0.142 4.142 12 C -0.080 4.080 13 C -0.173 4.173 14 C -0.127 4.127 15 C -0.181 4.181 16 C -0.077 4.077 17 N 0.040 4.960 18 C -0.480 4.480 19 H 0.093 0.907 20 C -0.172 4.172 21 N -0.516 5.516 22 Si 0.755 3.245 23 H -0.135 1.135 24 H -0.214 1.214 25 H -0.195 1.195 26 C -0.072 4.072 27 C -0.038 4.038 28 O -0.255 6.255 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.143 0.857 32 H 0.103 0.897 33 H 0.166 0.834 34 H 0.213 0.787 35 H 0.180 0.820 36 H 0.177 0.823 37 H 0.161 0.839 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.151 0.849 41 H 0.130 0.870 42 H 0.179 0.821 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.270 -14.306 14.434 21.268 hybrid contribution 0.466 1.469 -0.782 1.728 sum -5.805 -12.838 13.652 19.619 Atomic orbital electron populations 1.21900 0.84863 1.07333 1.04777 1.19778 0.98420 0.77171 0.88146 1.30864 0.92549 0.96462 0.92434 1.81213 1.09332 1.15522 1.08629 1.22509 0.79160 1.04257 0.97170 1.47837 1.06535 1.63657 1.16400 1.17442 0.85166 0.77449 0.82528 1.90782 1.77466 1.41854 1.35248 1.20280 0.89578 1.01744 1.04010 1.21262 0.92095 1.00960 1.04686 1.18479 0.95041 0.97750 1.02968 1.20720 0.90482 0.98210 0.98591 1.20945 0.97595 0.98428 1.00297 1.21106 0.97836 0.95499 0.98220 1.20388 0.90846 1.02448 1.04435 1.18997 0.87582 0.97166 1.03948 1.40177 1.03833 1.20280 1.31706 1.19068 1.20160 0.93115 1.15674 0.90707 1.26202 0.98003 0.93802 0.99228 1.69712 1.38164 1.09259 1.34477 0.86152 0.81922 0.77115 0.79262 1.13530 1.21374 1.19530 1.23424 1.02133 1.00469 0.81184 1.23350 0.80010 0.99477 1.00914 1.88135 1.21958 1.73939 1.41444 0.89894 0.89271 0.85740 0.89679 0.83442 0.78657 0.82032 0.82261 0.83940 0.88630 0.90031 0.84916 0.86993 0.82138 0.96041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.81 71.98 0.63 -0.85 16 2 C 0.21 4.29 1.05 -12.64 -0.01 4.27 16 3 C 0.20 6.25 12.34 89.44 1.10 7.35 16 4 N -0.47 -18.93 18.54 20.01 0.37 -18.56 16 5 C 0.09 2.10 5.27 86.21 0.45 2.56 16 6 N -0.61 -18.25 2.77 -822.64 -2.28 -20.53 16 7 C 0.58 25.69 7.51 86.51 0.65 26.34 16 8 O -0.57 -31.11 14.89 -4.27 -0.06 -31.18 16 9 C -0.04 -1.91 6.33 39.91 0.25 -1.66 16 10 C -0.16 -5.69 8.40 22.63 0.19 -5.50 16 11 C -0.14 -5.21 6.16 -21.33 -0.13 -5.34 16 12 C -0.06 -1.74 10.06 22.31 0.22 -1.52 16 13 C -0.15 -4.17 9.97 22.03 0.22 -3.95 16 14 C -0.11 -3.57 10.02 22.32 0.22 -3.34 16 15 C -0.16 -7.11 6.59 22.38 0.15 -6.96 16 16 C 0.04 1.68 4.96 39.06 0.19 1.88 16 17 N -0.29 -15.95 2.43 -331.35 -0.81 -16.76 16 18 C -0.35 -22.13 9.43 84.09 0.79 -21.34 16 19 H 0.08 5.36 7.22 -2.91 -0.02 5.34 16 20 C 0.03 2.12 5.19 84.95 0.44 2.56 16 21 N -0.88 -55.20 13.95 21.67 0.30 -54.90 16 22 Si 0.93 47.05 23.70 68.60 1.63 48.67 16 23 H -0.21 -9.48 5.47 99.48 0.54 -8.94 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 25 H -0.27 -14.06 6.90 99.48 0.69 -13.38 16 26 C 0.05 0.98 5.15 86.35 0.44 1.43 16 27 C 0.04 0.73 6.69 72.08 0.48 1.21 16 28 O -0.34 -6.03 10.21 -148.98 -1.52 -7.55 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.08 2.44 7.04 -2.39 -0.02 2.42 16 33 H 0.15 1.97 8.13 -2.39 -0.02 1.95 16 34 H 0.20 4.44 6.00 -2.91 -0.02 4.43 16 35 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 38 H 0.10 4.60 5.53 -2.91 -0.02 4.59 16 39 H 0.29 16.49 8.31 -92.71 -0.77 15.72 16 40 H 0.13 1.49 8.11 -2.38 -0.02 1.47 16 41 H 0.11 2.62 4.37 -2.38 -0.01 2.61 16 42 H 0.16 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.02 0.56 7.02 -2.39 -0.02 0.54 16 Total: -1.00 -91.55 348.36 4.82 -86.73 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.88 Total: 16.94 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 6.31 Total: -2.87 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -2.41 Total: -110.75 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -1.58 Total: -38.73 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.63 Total: 48.67 kcal Total: -91.55 4.82 -86.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887674814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.589 kcal (2) G-P(sol) polarization free energy of solvation -91.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds