Wall clock time and date at job start Tue Mar 31 2020 22:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99577 * 2 1 4 4 C 1.53005 * 109.60394 * 54.76398 * 3 2 1 5 5 N 1.46506 * 109.46898 * 59.92324 * 4 3 2 6 6 C 1.34777 * 119.99943 * 174.93355 * 5 4 3 7 7 O 1.21611 * 119.99601 * 359.97438 * 6 5 4 8 8 C 1.47420 * 120.00007 * 179.97438 * 6 5 4 9 9 C 1.41286 * 126.41643 * 0.04442 * 8 6 5 10 10 N 1.30449 * 108.02293 * 179.70261 * 9 8 6 11 11 N 1.39935 * 108.89965 * 0.40661 * 10 9 8 12 12 C 1.46493 * 125.75600 * 179.84814 * 11 10 9 13 13 C 1.50699 * 109.47368 * 269.69133 * 12 11 10 14 14 H 1.07996 * 119.99815 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00328 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99729 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00136 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47027 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47448 * 119.99868 * 17 15 13 20 20 H 1.48502 * 109.46865 * 240.00081 * 17 15 13 21 21 C 1.34259 * 108.48523 * 359.58314 * 11 10 9 22 22 C 1.50705 * 126.28767 * 180.22207 * 21 11 10 23 23 C 1.53848 * 109.47095 * 294.51596 * 3 2 1 24 24 C 1.55142 * 106.89956 * 287.42139 * 23 3 2 25 25 S 1.83459 * 102.20057 * 317.88314 * 24 23 3 26 26 C 1.54277 * 109.60982 * 175.09837 * 3 2 1 27 27 H 1.08992 * 109.47134 * 59.18631 * 1 2 3 28 28 H 1.09005 * 109.46380 * 179.18541 * 1 2 3 29 29 H 1.09000 * 109.46972 * 299.18250 * 1 2 3 30 30 H 1.08992 * 109.47317 * 299.92154 * 4 3 2 31 31 H 1.08997 * 109.46931 * 179.91492 * 4 3 2 32 32 H 0.96995 * 120.00202 * 354.92843 * 5 4 3 33 33 H 1.08006 * 125.98931 * 359.97438 * 9 8 6 34 34 H 1.09000 * 109.47293 * 149.69115 * 12 11 10 35 35 H 1.09005 * 109.47285 * 29.69029 * 12 11 10 36 36 H 0.97008 * 119.99703 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.47125 * 89.99871 * 22 21 11 38 38 H 1.08996 * 109.47057 * 209.99845 * 22 21 11 39 39 H 1.09000 * 109.47231 * 330.00076 * 22 21 11 40 40 H 1.08997 * 109.97816 * 46.77840 * 23 3 2 41 41 H 1.08995 * 109.97986 * 168.06199 * 23 3 2 42 42 H 1.09001 * 110.85533 * 199.70271 * 24 23 3 43 43 H 1.08996 * 111.03142 * 76.13950 * 24 23 3 44 44 H 1.08996 * 110.40547 * 210.58754 * 26 3 2 45 45 H 1.09000 * 110.40004 * 333.00631 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4592 2.1127 1.1773 5 7 1.7877 1.4320 2.4323 6 6 1.4911 2.0130 3.6117 7 8 0.9512 3.1025 3.6340 8 6 1.8211 1.3278 4.8746 9 6 2.4455 0.0673 5.0066 10 7 2.5703 -0.1899 6.2794 11 7 2.0312 0.8736 7.0118 12 6 1.9756 0.9656 8.4728 13 6 0.6836 0.3661 8.9651 14 1 -0.0254 -0.0423 8.2602 15 6 0.4062 0.3398 10.3154 16 7 1.2693 0.8375 11.1738 17 14 -1.1950 -0.4041 10.9257 18 1 -1.9871 -0.8917 9.7681 19 1 -0.8983 -1.5390 11.8363 20 1 -1.9727 0.6277 11.6577 21 6 1.5787 1.7980 6.1497 22 6 0.9258 3.1081 6.5081 23 6 1.6689 2.0188 -1.3197 24 6 2.5195 1.3460 -2.4291 25 16 4.1463 1.1487 -1.6042 26 6 3.5436 1.1897 0.1242 27 1 -0.3633 0.5264 -0.8825 28 1 -0.3632 -1.0277 -0.0146 29 1 -0.3633 0.5011 0.8972 30 1 0.3768 2.1994 1.0835 31 1 1.9050 3.1074 1.1761 32 1 2.2186 0.5632 2.4145 33 1 2.7675 -0.5695 4.1959 34 1 2.0282 2.0121 8.7732 35 1 2.8161 0.4212 8.9034 36 1 1.0740 0.8193 12.1238 37 1 1.6888 3.8809 6.6014 38 1 0.2192 3.3877 5.7267 39 1 0.3970 3.0033 7.4555 40 1 0.6082 1.9029 -1.5422 41 1 1.9210 3.0767 -1.2473 42 1 2.6027 1.9945 -3.3013 43 1 2.1049 0.3769 -2.7063 44 1 3.9490 2.0556 0.6475 45 1 3.8144 0.2701 0.6429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928499314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:24 Heat of formation + Delta-G solvation = -14.414249 kcal Electronic energy + Delta-G solvation = -27317.990810 eV Core-core repulsion = 23463.208846 eV Total energy + Delta-G solvation = -3854.781963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86263 -40.13704 -38.43446 -34.90144 -34.08498 -33.78762 -32.09164 -31.20809 -30.26367 -28.31682 -27.08478 -26.68097 -26.33359 -24.13105 -23.28094 -21.86754 -20.63659 -19.85356 -19.07271 -17.52537 -17.36671 -16.82111 -16.60339 -16.13215 -15.90033 -15.33218 -15.06047 -14.93895 -14.51342 -14.44479 -14.08738 -14.01987 -13.64606 -13.41658 -13.16150 -12.77879 -12.63301 -12.56175 -12.50010 -12.35737 -12.21851 -12.08097 -11.90294 -11.79160 -11.49880 -11.18208 -11.12047 -10.93602 -10.47182 -10.39339 -10.21380 -9.98450 -9.93499 -9.46506 -9.08491 -8.73739 -8.60587 -8.00219 -7.94759 -6.35799 -4.43756 1.42697 1.95342 2.14573 2.76909 2.96310 3.15317 3.22772 3.24210 3.31064 3.52644 3.85284 3.98971 4.08270 4.20574 4.22571 4.53363 4.66478 4.84077 4.95597 4.98078 5.02382 5.08528 5.09638 5.17614 5.22445 5.25857 5.29678 5.37582 5.47066 5.49697 5.61010 5.75032 5.92349 6.06812 6.36102 6.51583 6.56545 6.66650 6.76491 6.87979 7.13942 7.54129 7.65508 7.74949 7.76855 8.35394 8.53205 8.62506 9.23413 10.72396 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023689 B = 0.002284 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.698676 B =12255.660978 C =12402.937676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.366 6.366 3 C 0.100 3.900 4 C 0.106 3.894 5 N -0.730 5.730 6 C 0.605 3.395 7 O -0.556 6.556 8 C -0.334 4.334 9 C 0.059 3.941 10 N -0.295 5.295 11 N -0.313 5.313 12 C 0.250 3.750 13 C -0.540 4.540 14 H 0.066 0.934 15 C 0.067 3.933 16 N -0.889 5.889 17 Si 0.908 3.092 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.166 3.834 22 C -0.098 4.098 23 C -0.151 4.151 24 C -0.065 4.065 25 S -0.283 6.283 26 C -0.060 4.060 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.402 0.598 33 H 0.175 0.825 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.269 0.731 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.408 2.621 -24.799 24.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.285 6.285 3 C 0.058 3.942 4 C -0.020 4.020 5 N -0.384 5.384 6 C 0.396 3.604 7 O -0.436 6.436 8 C -0.349 4.349 9 C -0.129 4.129 10 N -0.114 5.114 11 N -0.090 5.090 12 C 0.133 3.867 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.735 3.265 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.205 1.205 21 C 0.029 3.971 22 C -0.156 4.156 23 C -0.190 4.190 24 C -0.213 4.213 25 S -0.056 6.056 26 C -0.208 4.208 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.237 0.763 33 H 0.192 0.808 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.129 0.871 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.720 2.272 -23.971 24.140 hybrid contribution -2.190 -0.122 0.287 2.212 sum -0.471 2.150 -23.684 23.786 Atomic orbital electron populations 1.22925 0.80560 1.03414 1.00649 1.88025 1.20228 1.25396 1.94826 1.22569 0.92666 0.84724 0.94211 1.21753 1.00989 0.96480 0.82769 1.45586 1.64699 1.23581 1.04509 1.17315 0.76683 0.84085 0.82308 1.90697 1.44172 1.21207 1.87495 1.19624 1.22605 1.00428 0.92242 1.23725 0.99094 0.95151 0.94895 1.77149 1.20279 1.10176 1.03847 1.49384 1.39560 1.11116 1.08963 1.19862 0.99818 0.99536 0.67456 1.21288 1.02887 1.41090 0.92589 0.91604 1.24930 0.97713 0.94869 0.96179 1.69926 1.35369 1.44469 1.02869 0.86269 0.82397 0.78969 0.78896 1.19527 1.20542 1.20541 1.21476 0.93731 0.92987 0.88905 1.20614 1.00712 0.90390 1.03861 1.23070 1.01936 1.01316 0.92724 1.24145 0.93135 1.04261 0.99771 1.87666 1.15663 1.97468 1.04852 1.24032 0.93553 1.07423 0.95747 0.93690 0.89059 0.92884 0.90912 0.89969 0.76265 0.80804 0.92550 0.92466 0.92143 0.90499 0.88673 0.89889 0.88872 0.88722 0.87782 0.88728 0.87119 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 10.21 101.05 1.03 1.18 16 2 O -0.37 -3.12 9.90 -35.23 -0.35 -3.46 16 3 C 0.10 0.76 0.47 -89.51 -0.04 0.71 16 4 C 0.11 0.98 3.91 -4.04 -0.02 0.97 16 5 N -0.73 -8.34 5.17 -61.38 -0.32 -8.65 16 6 C 0.61 9.53 7.81 -12.52 -0.10 9.43 16 7 O -0.56 -10.07 14.83 5.27 0.08 -9.99 16 8 C -0.33 -5.94 6.13 -105.07 -0.64 -6.59 16 9 C 0.06 1.00 11.50 -16.98 -0.20 0.81 16 10 N -0.29 -6.28 12.50 30.86 0.39 -5.90 16 11 N -0.31 -7.02 3.56 -57.78 -0.21 -7.22 16 12 C 0.25 6.19 5.78 -5.20 -0.03 6.16 16 13 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 14 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -24.43 13.29 55.43 0.74 -23.69 16 17 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.17 3.34 7.01 -81.60 -0.57 2.76 16 22 C -0.10 -1.74 9.34 36.01 0.34 -1.40 16 23 C -0.15 -0.89 5.25 -25.16 -0.13 -1.03 16 24 C -0.07 -0.42 7.27 38.29 0.28 -0.14 16 25 S -0.28 -2.56 23.26 -107.50 -2.50 -5.06 16 26 C -0.06 -0.49 5.91 37.83 0.22 -0.26 16 27 H 0.04 0.24 6.29 -51.93 -0.33 -0.09 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.42 6.40 -51.93 -0.33 0.09 16 30 H 0.07 0.69 6.52 -51.93 -0.34 0.35 16 31 H 0.08 0.79 8.13 -51.93 -0.42 0.36 16 32 H 0.40 4.06 6.94 -40.82 -0.28 3.77 16 33 H 0.17 2.18 7.50 -52.48 -0.39 1.79 16 34 H 0.06 1.38 7.62 -51.93 -0.40 0.99 16 35 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.09 1.65 6.50 -51.93 -0.34 1.32 16 39 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 40 H 0.09 0.44 6.19 -51.93 -0.32 0.12 16 41 H 0.09 0.51 8.11 -51.93 -0.42 0.09 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.11 0.88 7.89 -51.93 -0.41 0.47 16 45 H 0.11 0.92 8.08 -51.93 -0.42 0.50 16 LS Contribution 379.52 15.07 5.72 5.72 Total: -1.00 -31.16 379.52 -8.21 -39.37 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.46 Total: 3.72 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -0.28 Total: -0.47 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.60 Total: -45.47 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.27 Total: -13.46 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.50 Total: -5.06 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.16 -8.21 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928499314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.959 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds