Wall clock time and date at job start Tue Mar 31 2020 22:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99577 * 2 1 4 4 C 1.53005 * 109.60394 * 54.76398 * 3 2 1 5 5 N 1.46506 * 109.46898 * 59.92324 * 4 3 2 6 6 C 1.34777 * 119.99943 * 174.93355 * 5 4 3 7 7 O 1.21611 * 119.99601 * 359.97438 * 6 5 4 8 8 C 1.47420 * 120.00007 * 179.97438 * 6 5 4 9 9 C 1.41286 * 126.41643 * 0.04442 * 8 6 5 10 10 N 1.30449 * 108.02293 * 179.70261 * 9 8 6 11 11 N 1.39935 * 108.89965 * 0.40661 * 10 9 8 12 12 C 1.46493 * 125.75600 * 179.84814 * 11 10 9 13 13 C 1.50699 * 109.47368 * 269.69133 * 12 11 10 14 14 H 1.07996 * 119.99815 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00328 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99729 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00136 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47027 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47448 * 119.99868 * 17 15 13 20 20 H 1.48502 * 109.46865 * 240.00081 * 17 15 13 21 21 C 1.34259 * 108.48523 * 359.58314 * 11 10 9 22 22 C 1.50705 * 126.28767 * 180.22207 * 21 11 10 23 23 C 1.53848 * 109.47095 * 294.51596 * 3 2 1 24 24 C 1.55142 * 106.89956 * 287.42139 * 23 3 2 25 25 S 1.83459 * 102.20057 * 317.88314 * 24 23 3 26 26 C 1.54277 * 109.60982 * 175.09837 * 3 2 1 27 27 H 1.08992 * 109.47134 * 59.18631 * 1 2 3 28 28 H 1.09005 * 109.46380 * 179.18541 * 1 2 3 29 29 H 1.09000 * 109.46972 * 299.18250 * 1 2 3 30 30 H 1.08992 * 109.47317 * 299.92154 * 4 3 2 31 31 H 1.08997 * 109.46931 * 179.91492 * 4 3 2 32 32 H 0.96995 * 120.00202 * 354.92843 * 5 4 3 33 33 H 1.08006 * 125.98931 * 359.97438 * 9 8 6 34 34 H 1.09000 * 109.47293 * 149.69115 * 12 11 10 35 35 H 1.09005 * 109.47285 * 29.69029 * 12 11 10 36 36 H 0.97008 * 119.99703 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.47125 * 89.99871 * 22 21 11 38 38 H 1.08996 * 109.47057 * 209.99845 * 22 21 11 39 39 H 1.09000 * 109.47231 * 330.00076 * 22 21 11 40 40 H 1.08997 * 109.97816 * 46.77840 * 23 3 2 41 41 H 1.08995 * 109.97986 * 168.06199 * 23 3 2 42 42 H 1.09001 * 110.85533 * 199.70271 * 24 23 3 43 43 H 1.08996 * 111.03142 * 76.13950 * 24 23 3 44 44 H 1.08996 * 110.40547 * 210.58754 * 26 3 2 45 45 H 1.09000 * 110.40004 * 333.00631 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4592 2.1127 1.1773 5 7 1.7877 1.4320 2.4323 6 6 1.4911 2.0130 3.6117 7 8 0.9512 3.1025 3.6340 8 6 1.8211 1.3278 4.8746 9 6 2.4455 0.0673 5.0066 10 7 2.5703 -0.1899 6.2794 11 7 2.0312 0.8736 7.0118 12 6 1.9756 0.9656 8.4728 13 6 0.6836 0.3661 8.9651 14 1 -0.0254 -0.0423 8.2602 15 6 0.4062 0.3398 10.3154 16 7 1.2693 0.8375 11.1738 17 14 -1.1950 -0.4041 10.9257 18 1 -1.9871 -0.8917 9.7681 19 1 -0.8983 -1.5390 11.8363 20 1 -1.9727 0.6277 11.6577 21 6 1.5787 1.7980 6.1497 22 6 0.9258 3.1081 6.5081 23 6 1.6689 2.0188 -1.3197 24 6 2.5195 1.3460 -2.4291 25 16 4.1463 1.1487 -1.6042 26 6 3.5436 1.1897 0.1242 27 1 -0.3633 0.5264 -0.8825 28 1 -0.3632 -1.0277 -0.0146 29 1 -0.3633 0.5011 0.8972 30 1 0.3768 2.1994 1.0835 31 1 1.9050 3.1074 1.1761 32 1 2.2186 0.5632 2.4145 33 1 2.7675 -0.5695 4.1959 34 1 2.0282 2.0121 8.7732 35 1 2.8161 0.4212 8.9034 36 1 1.0740 0.8193 12.1238 37 1 1.6888 3.8809 6.6014 38 1 0.2192 3.3877 5.7267 39 1 0.3970 3.0033 7.4555 40 1 0.6082 1.9029 -1.5422 41 1 1.9210 3.0767 -1.2473 42 1 2.6027 1.9945 -3.3013 43 1 2.1049 0.3769 -2.7063 44 1 3.9490 2.0556 0.6475 45 1 3.8144 0.2701 0.6429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928499314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:24 Heat of formation + Delta-G solvation = -34.807832 kcal Electronic energy + Delta-G solvation = -27318.875142 eV Core-core repulsion = 23463.208846 eV Total energy + Delta-G solvation = -3855.666295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.32618 -40.95102 -39.55859 -35.86325 -35.67721 -34.77186 -33.78093 -32.75269 -30.98573 -29.53154 -28.56498 -27.82179 -27.07741 -25.43777 -24.58372 -23.13034 -21.36685 -21.18031 -20.45987 -18.88088 -18.63306 -18.03072 -17.49338 -17.09315 -16.75950 -16.47399 -16.36772 -16.21519 -15.96893 -15.48492 -15.27281 -14.92494 -14.65979 -14.37525 -14.29900 -14.06520 -14.02060 -13.64847 -13.60052 -13.53878 -13.14819 -13.09375 -12.95973 -12.92751 -12.85110 -12.72986 -12.39042 -12.33690 -11.84156 -11.76552 -11.72986 -11.08208 -10.85395 -10.77259 -10.55847 -10.26628 -10.13936 -9.44607 -8.69007 -8.38816 -6.55248 0.67971 0.82327 1.31888 1.35791 1.37262 1.38548 1.49257 1.65229 2.21097 2.32170 2.53917 2.68357 2.93367 3.38888 3.43070 3.63549 3.74666 3.75340 4.00143 4.13448 4.19030 4.22743 4.34101 4.39289 4.44061 4.49314 4.57967 4.59214 4.66090 4.67014 4.73883 4.79267 4.87378 4.90082 4.92227 5.01342 5.07318 5.16510 5.43634 5.48740 5.66856 5.74052 6.04593 6.08171 6.54306 6.57289 6.84341 7.16076 7.32852 8.69265 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023689 B = 0.002284 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.698676 B =12255.660978 C =12402.937676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.378 6.378 3 C 0.108 3.892 4 C 0.106 3.894 5 N -0.711 5.711 6 C 0.608 3.392 7 O -0.580 6.580 8 C -0.331 4.331 9 C 0.079 3.921 10 N -0.337 5.337 11 N -0.338 5.338 12 C 0.267 3.733 13 C -0.555 4.555 14 H 0.051 0.949 15 C 0.023 3.977 16 N -0.916 5.916 17 Si 0.972 3.028 18 H -0.272 1.272 19 H -0.274 1.274 20 H -0.268 1.268 21 C 0.146 3.854 22 C -0.090 4.090 23 C -0.148 4.148 24 C -0.052 4.052 25 S -0.333 6.333 26 C -0.054 4.054 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.411 0.589 33 H 0.222 0.778 34 H 0.051 0.949 35 H 0.031 0.969 36 H 0.274 0.726 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.120 0.880 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 2.470 -26.985 27.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.298 6.298 3 C 0.067 3.933 4 C -0.019 4.019 5 N -0.364 5.364 6 C 0.398 3.602 7 O -0.462 6.462 8 C -0.346 4.346 9 C -0.108 4.108 10 N -0.156 5.156 11 N -0.115 5.115 12 C 0.148 3.852 13 C -0.593 4.593 14 H 0.070 0.930 15 C -0.178 4.178 16 N -0.554 5.554 17 Si 0.796 3.204 18 H -0.197 1.197 19 H -0.199 1.199 20 H -0.193 1.193 21 C 0.010 3.990 22 C -0.148 4.148 23 C -0.187 4.187 24 C -0.199 4.199 25 S -0.107 6.107 26 C -0.202 4.202 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.238 0.762 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.115 0.885 44 H 0.130 0.870 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.577 2.111 -26.203 26.294 hybrid contribution -1.797 -0.081 0.801 1.969 sum -1.221 2.030 -25.403 25.513 Atomic orbital electron populations 1.23023 0.79755 1.04048 1.01010 1.88020 1.21107 1.25729 1.94900 1.22514 0.92041 0.84472 0.94322 1.21907 1.01388 0.96616 0.81989 1.45416 1.63209 1.23613 1.04114 1.17044 0.76762 0.83709 0.82707 1.90688 1.45422 1.22194 1.87861 1.19933 1.21588 1.00549 0.92515 1.24447 0.96754 0.95028 0.94571 1.77100 1.22131 1.10845 1.05553 1.49113 1.41731 1.12454 1.08246 1.19365 0.97997 0.98417 0.69381 1.21415 1.03468 1.41545 0.92853 0.93037 1.25736 1.00870 0.95020 0.96177 1.70006 1.36982 1.45127 1.03330 0.85293 0.78460 0.78449 0.78214 1.19686 1.19887 1.19315 1.21987 0.93976 0.93368 0.89637 1.20587 1.00961 0.90046 1.03176 1.23079 1.02829 1.01446 0.91307 1.24218 0.90802 1.04816 1.00108 1.87860 1.18781 1.97602 1.06475 1.24013 0.93987 1.07319 0.94871 0.91765 0.88480 0.93981 0.90503 0.89873 0.75251 0.76202 0.93153 0.95094 0.91650 0.89044 0.88158 0.91244 0.87116 0.87902 0.86140 0.88547 0.87025 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.21 113.37 1.16 1.35 16 2 O -0.38 -5.42 9.90 -148.98 -1.47 -6.90 16 3 C 0.11 1.36 0.47 -10.07 0.00 1.35 16 4 C 0.11 1.70 3.91 86.38 0.34 2.04 16 5 N -0.71 -14.56 5.17 -466.36 -2.41 -16.97 16 6 C 0.61 18.11 7.81 86.66 0.68 18.79 16 7 O -0.58 -20.18 14.83 -4.07 -0.06 -20.24 16 8 C -0.33 -11.43 6.13 -20.16 -0.12 -11.56 16 9 C 0.08 2.59 11.50 85.65 0.99 3.58 16 10 N -0.34 -14.42 12.50 -56.27 -0.70 -15.12 16 11 N -0.34 -15.53 3.56 -336.70 -1.20 -16.73 16 12 C 0.27 13.76 5.78 85.63 0.50 14.25 16 13 C -0.55 -30.47 9.39 25.60 0.24 -30.23 16 14 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 15 C 0.02 1.26 5.46 84.65 0.46 1.72 16 16 N -0.92 -51.12 13.29 21.45 0.28 -50.83 16 17 Si 0.97 42.47 29.54 68.60 2.03 44.50 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 21 C 0.15 5.90 7.01 42.14 0.30 6.20 16 22 C -0.09 -3.22 9.34 71.24 0.67 -2.55 16 23 C -0.15 -1.28 5.25 31.61 0.17 -1.12 16 24 C -0.05 -0.53 7.27 72.72 0.53 0.00 16 25 S -0.33 -5.58 23.26 -56.49 -1.31 -6.89 16 26 C -0.05 -0.79 5.91 72.41 0.43 -0.36 16 27 H 0.06 0.46 6.29 -2.39 -0.02 0.45 16 28 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.04 0.57 6.40 -2.39 -0.02 0.55 16 30 H 0.08 1.24 6.52 -2.39 -0.02 1.23 16 31 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 32 H 0.41 7.13 6.94 -92.71 -0.64 6.48 16 33 H 0.22 4.81 7.50 -2.91 -0.02 4.79 16 34 H 0.05 2.59 7.62 -2.39 -0.02 2.58 16 35 H 0.03 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 37 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 38 H 0.10 3.47 6.50 -2.39 -0.02 3.46 16 39 H 0.07 2.65 7.70 -2.39 -0.02 2.63 16 40 H 0.11 0.62 6.19 -2.39 -0.01 0.60 16 41 H 0.10 0.77 8.11 -2.39 -0.02 0.76 16 42 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.11 1.59 7.89 -2.39 -0.02 1.57 16 45 H 0.11 1.60 8.08 -2.39 -0.02 1.58 16 Total: -1.00 -68.30 379.52 1.83 -66.47 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.38 Total: 19.25 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 6.31 Total: 3.47 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -4.03 Total: -99.65 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -1.53 Total: -27.14 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -1.31 Total: -6.89 kcal Total: -68.30 1.83 -66.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928499314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.662 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds