Wall clock time and date at job start Tue Mar 31 2020 22:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00121 * 2 1 4 4 C 1.52995 * 109.60176 * 55.00411 * 3 2 1 5 5 N 1.46500 * 109.47196 * 59.15398 * 4 3 2 6 6 C 1.34783 * 120.00050 * 184.66281 * 5 4 3 7 7 O 1.21599 * 119.99993 * 0.02562 * 6 5 4 8 8 C 1.47427 * 119.99470 * 180.02562 * 6 5 4 9 9 C 1.41290 * 126.42149 * 359.68631 * 8 6 5 10 10 N 1.30448 * 108.02468 * 179.87905 * 9 8 6 11 11 N 1.39928 * 108.89632 * 0.38766 * 10 9 8 12 12 C 1.46498 * 125.75389 * 179.72814 * 11 10 9 13 13 C 1.50700 * 109.47327 * 270.02218 * 12 11 10 14 14 H 1.07999 * 120.00209 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00100 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99952 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99849 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47250 * 89.99813 * 17 15 13 19 19 H 1.48503 * 109.46950 * 209.99328 * 17 15 13 20 20 H 1.48491 * 109.47094 * 329.99453 * 17 15 13 21 21 C 1.34261 * 108.49634 * 359.75021 * 11 10 9 22 22 C 1.50703 * 126.29686 * 180.02562 * 21 11 10 23 23 C 1.52946 * 109.45601 * 175.23623 * 3 2 1 24 24 C 1.53704 * 112.48952 * 89.73892 * 23 3 2 25 25 S 1.83457 * 104.98660 * 2.86585 * 24 23 3 26 26 C 1.55158 * 109.60445 * 294.68095 * 3 2 1 27 27 H 1.09001 * 109.47119 * 59.26290 * 1 2 3 28 28 H 1.09004 * 109.46988 * 179.25751 * 1 2 3 29 29 H 1.09000 * 109.47044 * 299.26022 * 1 2 3 30 30 H 1.09005 * 109.47647 * 179.15923 * 4 3 2 31 31 H 1.09006 * 109.47438 * 299.15562 * 4 3 2 32 32 H 0.96994 * 119.99903 * 4.66885 * 5 4 3 33 33 H 1.08000 * 125.98346 * 0.02562 * 9 8 6 34 34 H 1.09000 * 109.47153 * 30.02513 * 12 11 10 35 35 H 1.09004 * 109.47002 * 150.02511 * 12 11 10 36 36 H 0.97008 * 119.99824 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46969 * 270.00185 * 22 21 11 38 38 H 1.09003 * 109.46952 * 29.99602 * 22 21 11 39 39 H 1.09000 * 109.47104 * 149.99901 * 22 21 11 40 40 H 1.09001 * 108.88418 * 210.53289 * 23 3 2 41 41 H 1.08999 * 108.88459 * 329.08356 * 23 3 2 42 42 H 1.09004 * 110.34303 * 121.69825 * 24 23 3 43 43 H 1.08999 * 110.33909 * 243.95135 * 24 23 3 44 44 H 1.08998 * 111.12895 * 39.59848 * 26 3 2 45 45 H 1.09004 * 111.13330 * 163.73724 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4639 2.1105 1.1807 5 7 1.7811 1.4183 2.4323 6 6 1.3153 1.8961 3.6034 7 8 0.6315 2.9014 3.6210 8 6 1.6351 1.1997 4.8629 9 6 2.4078 0.0247 4.9990 10 7 2.4645 -0.2765 6.2669 11 7 1.7341 0.6722 6.9912 12 6 1.5497 0.6833 8.4445 13 6 0.3162 -0.1058 8.8004 14 1 -0.2715 -0.5697 8.0220 15 6 -0.0617 -0.2366 10.1199 16 7 -1.1379 -0.9257 10.4305 17 14 0.9550 0.5651 11.4664 18 1 0.4500 1.9390 11.7165 19 1 0.8469 -0.2363 12.7119 20 1 2.3763 0.6298 11.0413 21 6 1.2304 1.5703 6.1297 22 6 0.3800 2.7639 6.4809 23 6 3.5303 1.1862 0.1198 24 6 4.2219 1.0860 -1.2492 25 16 2.8683 1.2448 -2.4773 26 6 1.6644 2.0292 -1.3281 27 1 -0.3633 0.5252 -0.8833 28 1 -0.3633 -1.0276 -0.0133 29 1 -0.3633 0.5023 0.8965 30 1 1.9197 3.1006 1.1874 31 1 0.3826 2.2091 1.0840 32 1 2.3263 0.6163 2.4182 33 1 2.8723 -0.5260 4.1944 34 1 2.4193 0.2344 8.9245 35 1 1.4351 1.7113 8.7883 36 1 -1.4039 -1.0173 11.3589 37 1 -0.6718 2.4784 6.4632 38 1 0.6438 3.1172 7.4777 39 1 0.5529 3.5592 5.7558 40 1 3.9125 2.0615 0.6450 41 1 3.7697 0.2950 0.6999 42 1 4.9402 1.8968 -1.3712 43 1 4.7175 0.1208 -1.3536 44 1 0.6385 1.8225 -1.6327 45 1 1.8394 3.1021 -1.2480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928499315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:27 Heat of formation + Delta-G solvation = -6.145682 kcal Electronic energy + Delta-G solvation = -27366.911244 eV Core-core repulsion = 23512.487833 eV Total energy + Delta-G solvation = -3854.423411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94890 -40.08341 -38.41925 -35.08575 -34.08153 -33.72815 -32.19699 -31.35875 -30.30064 -28.33537 -27.44671 -27.11280 -26.18770 -23.97683 -23.04088 -22.04974 -20.43297 -19.90830 -19.09844 -17.55801 -17.39738 -17.24969 -16.84862 -15.82371 -15.52333 -15.36548 -15.15188 -15.01714 -14.80676 -14.52320 -14.27147 -14.04018 -13.69046 -13.32795 -13.28876 -12.75612 -12.65581 -12.60314 -12.55158 -12.35383 -12.28436 -12.11060 -12.00995 -11.85012 -11.64227 -11.24965 -11.09190 -10.86723 -10.50870 -10.43473 -10.28417 -9.95218 -9.82216 -9.51007 -9.10946 -8.87450 -8.69050 -8.02243 -8.01043 -6.35331 -4.40181 1.42016 1.87766 2.07115 2.68597 2.95429 3.08537 3.15721 3.16898 3.27309 3.47241 3.80705 3.97387 4.09095 4.13355 4.22725 4.53113 4.68170 4.76745 4.88640 4.92168 5.02016 5.09967 5.13614 5.17739 5.22517 5.30521 5.33209 5.38074 5.48085 5.54850 5.58274 5.65051 5.81893 6.00183 6.22193 6.35388 6.41199 6.50077 6.56018 6.75349 6.97769 7.15641 7.51960 7.62736 8.17183 8.23874 8.49366 8.67751 9.18446 10.76864 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027179 B = 0.002258 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.963694 B =12398.778368 C =12456.618719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.357 6.357 3 C 0.105 3.895 4 C 0.105 3.895 5 N -0.728 5.728 6 C 0.605 3.395 7 O -0.555 6.555 8 C -0.330 4.330 9 C 0.062 3.938 10 N -0.292 5.292 11 N -0.313 5.313 12 C 0.224 3.776 13 C -0.546 4.546 14 H 0.082 0.918 15 C 0.081 3.919 16 N -0.882 5.882 17 Si 0.872 3.128 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.263 1.263 21 C 0.169 3.831 22 C -0.094 4.094 23 C -0.120 4.120 24 C -0.067 4.067 25 S -0.277 6.277 26 C -0.096 4.096 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.402 0.598 33 H 0.177 0.823 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.270 0.730 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.214 6.849 -21.881 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.276 6.276 3 C 0.063 3.937 4 C -0.021 4.021 5 N -0.382 5.382 6 C 0.396 3.604 7 O -0.435 6.435 8 C -0.345 4.345 9 C -0.125 4.125 10 N -0.111 5.111 11 N -0.090 5.090 12 C 0.106 3.894 13 C -0.584 4.584 14 H 0.100 0.900 15 C -0.124 4.124 16 N -0.519 5.519 17 Si 0.698 3.302 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.188 1.188 21 C 0.032 3.968 22 C -0.152 4.152 23 C -0.159 4.159 24 C -0.215 4.215 25 S -0.050 6.050 26 C -0.245 4.245 27 H 0.062 0.938 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.237 0.763 33 H 0.194 0.806 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.131 0.869 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.117 6.159 -21.843 24.103 hybrid contribution 0.149 0.792 1.324 1.550 sum 8.265 6.950 -20.519 23.188 Atomic orbital electron populations 1.22910 0.80743 1.03469 1.00397 1.88066 1.20097 1.24897 1.94530 1.22570 0.93824 0.84723 0.92602 1.21797 1.01618 0.95894 0.82821 1.45574 1.56191 1.31221 1.05190 1.17286 0.77932 0.82948 0.82268 1.90699 1.39616 1.26026 1.87128 1.19623 1.17902 1.04421 0.92603 1.23745 0.98664 0.95252 0.94862 1.77156 1.16811 1.12828 1.04316 1.48908 1.34689 1.16690 1.08666 1.20158 0.99852 0.98886 0.70529 1.21082 1.08447 1.34306 0.94525 0.90037 1.24792 0.94845 0.94557 0.98165 1.69863 1.23684 1.39184 1.19144 0.86906 0.81132 0.80067 0.82081 1.19498 1.20336 1.18783 1.21474 0.93691 0.92619 0.88990 1.20596 0.98765 0.93381 1.02470 1.21988 0.91083 1.05399 0.97402 1.23922 0.97918 1.06093 0.93565 1.87876 1.14707 1.81255 1.21139 1.24951 1.02009 1.02660 0.94844 0.93840 0.89037 0.93000 0.90500 0.90450 0.76302 0.80595 0.92707 0.93421 0.91950 0.89472 0.91104 0.88681 0.88931 0.88592 0.88885 0.87964 0.86897 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.24 101.05 1.03 1.21 16 2 O -0.36 -3.29 9.95 -35.23 -0.35 -3.64 16 3 C 0.11 0.80 0.43 -89.51 -0.04 0.76 16 4 C 0.10 0.95 3.86 -4.04 -0.02 0.93 16 5 N -0.73 -8.03 5.21 -61.38 -0.32 -8.35 16 6 C 0.61 9.28 7.81 -12.52 -0.10 9.18 16 7 O -0.56 -9.84 14.84 5.28 0.08 -9.77 16 8 C -0.33 -5.71 6.13 -105.06 -0.64 -6.35 16 9 C 0.06 1.03 11.50 -16.98 -0.20 0.83 16 10 N -0.29 -6.02 12.50 30.86 0.39 -5.64 16 11 N -0.31 -6.77 3.56 -57.77 -0.21 -6.97 16 12 C 0.22 5.15 5.04 -5.19 -0.03 5.12 16 13 C -0.55 -14.79 9.94 -34.44 -0.34 -15.13 16 14 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 15 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 16 N -0.88 -25.64 13.96 55.43 0.77 -24.87 16 17 Si 0.87 19.55 27.47 -169.99 -4.67 14.88 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.26 -5.61 6.54 56.52 0.37 -5.24 16 21 C 0.17 3.29 7.01 -81.60 -0.57 2.71 16 22 C -0.09 -1.61 9.57 36.01 0.34 -1.27 16 23 C -0.12 -0.78 4.94 -26.39 -0.13 -0.91 16 24 C -0.07 -0.43 7.38 37.52 0.28 -0.15 16 25 S -0.28 -2.42 23.13 -107.50 -2.49 -4.91 16 26 C -0.10 -0.68 6.34 38.30 0.24 -0.43 16 27 H 0.04 0.30 6.26 -51.93 -0.32 -0.03 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.47 6.41 -51.93 -0.33 0.14 16 30 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.08 0.76 6.56 -51.93 -0.34 0.42 16 32 H 0.40 3.83 6.66 -40.82 -0.27 3.55 16 33 H 0.18 2.09 7.50 -52.49 -0.39 1.69 16 34 H 0.06 1.26 7.20 -51.93 -0.37 0.89 16 35 H 0.05 1.01 6.44 -51.93 -0.33 0.67 16 36 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.07 1.14 7.05 -51.93 -0.37 0.77 16 39 H 0.09 1.54 6.50 -51.93 -0.34 1.20 16 40 H 0.09 0.52 7.76 -51.93 -0.40 0.12 16 41 H 0.10 0.61 7.76 -51.93 -0.40 0.20 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.11 0.75 6.17 -51.93 -0.32 0.43 16 45 H 0.10 0.60 8.11 -51.93 -0.42 0.18 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -32.64 374.44 -7.74 -40.37 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.32 Total: 4.62 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -0.26 Total: -1.38 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.63 Total: -45.83 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.27 Total: -13.40 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.67 Total: 14.88 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.49 Total: -4.91 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.64 -7.74 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928499315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.228 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds