Wall clock time and date at job start Tue Mar 31 2020 22:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42893 * 114.00121 * 2 1 4 4 C 1.52995 * 109.60176 * 55.00411 * 3 2 1 5 5 N 1.46500 * 109.47196 * 59.15398 * 4 3 2 6 6 C 1.34783 * 120.00050 * 184.66281 * 5 4 3 7 7 O 1.21599 * 119.99993 * 0.02562 * 6 5 4 8 8 C 1.47427 * 119.99470 * 180.02562 * 6 5 4 9 9 C 1.41290 * 126.42149 * 359.68631 * 8 6 5 10 10 N 1.30448 * 108.02468 * 179.87905 * 9 8 6 11 11 N 1.39928 * 108.89632 * 0.38766 * 10 9 8 12 12 C 1.46498 * 125.75389 * 179.72814 * 11 10 9 13 13 C 1.50700 * 109.47327 * 270.02218 * 12 11 10 14 14 H 1.07999 * 120.00209 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00100 * 179.97438 * 13 12 11 16 16 N 1.31511 * 119.99952 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99849 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47250 * 89.99813 * 17 15 13 19 19 H 1.48503 * 109.46950 * 209.99328 * 17 15 13 20 20 H 1.48491 * 109.47094 * 329.99453 * 17 15 13 21 21 C 1.34261 * 108.49634 * 359.75021 * 11 10 9 22 22 C 1.50703 * 126.29686 * 180.02562 * 21 11 10 23 23 C 1.52946 * 109.45601 * 175.23623 * 3 2 1 24 24 C 1.53704 * 112.48952 * 89.73892 * 23 3 2 25 25 S 1.83457 * 104.98660 * 2.86585 * 24 23 3 26 26 C 1.55158 * 109.60445 * 294.68095 * 3 2 1 27 27 H 1.09001 * 109.47119 * 59.26290 * 1 2 3 28 28 H 1.09004 * 109.46988 * 179.25751 * 1 2 3 29 29 H 1.09000 * 109.47044 * 299.26022 * 1 2 3 30 30 H 1.09005 * 109.47647 * 179.15923 * 4 3 2 31 31 H 1.09006 * 109.47438 * 299.15562 * 4 3 2 32 32 H 0.96994 * 119.99903 * 4.66885 * 5 4 3 33 33 H 1.08000 * 125.98346 * 0.02562 * 9 8 6 34 34 H 1.09000 * 109.47153 * 30.02513 * 12 11 10 35 35 H 1.09004 * 109.47002 * 150.02511 * 12 11 10 36 36 H 0.97008 * 119.99824 * 180.02562 * 16 15 13 37 37 H 1.09001 * 109.46969 * 270.00185 * 22 21 11 38 38 H 1.09003 * 109.46952 * 29.99602 * 22 21 11 39 39 H 1.09000 * 109.47104 * 149.99901 * 22 21 11 40 40 H 1.09001 * 108.88418 * 210.53289 * 23 3 2 41 41 H 1.08999 * 108.88459 * 329.08356 * 23 3 2 42 42 H 1.09004 * 110.34303 * 121.69825 * 24 23 3 43 43 H 1.08999 * 110.33909 * 243.95135 * 24 23 3 44 44 H 1.08998 * 111.12895 * 39.59848 * 26 3 2 45 45 H 1.09004 * 111.13330 * 163.73724 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4639 2.1105 1.1807 5 7 1.7811 1.4183 2.4323 6 6 1.3153 1.8961 3.6034 7 8 0.6315 2.9014 3.6210 8 6 1.6351 1.1997 4.8629 9 6 2.4078 0.0247 4.9990 10 7 2.4645 -0.2765 6.2669 11 7 1.7341 0.6722 6.9912 12 6 1.5497 0.6833 8.4445 13 6 0.3162 -0.1058 8.8004 14 1 -0.2715 -0.5697 8.0220 15 6 -0.0617 -0.2366 10.1199 16 7 -1.1379 -0.9257 10.4305 17 14 0.9550 0.5651 11.4664 18 1 0.4500 1.9390 11.7165 19 1 0.8469 -0.2363 12.7119 20 1 2.3763 0.6298 11.0413 21 6 1.2304 1.5703 6.1297 22 6 0.3800 2.7639 6.4809 23 6 3.5303 1.1862 0.1198 24 6 4.2219 1.0860 -1.2492 25 16 2.8683 1.2448 -2.4773 26 6 1.6644 2.0292 -1.3281 27 1 -0.3633 0.5252 -0.8833 28 1 -0.3633 -1.0276 -0.0133 29 1 -0.3633 0.5023 0.8965 30 1 1.9197 3.1006 1.1874 31 1 0.3826 2.2091 1.0840 32 1 2.3263 0.6163 2.4182 33 1 2.8723 -0.5260 4.1944 34 1 2.4193 0.2344 8.9245 35 1 1.4351 1.7113 8.7883 36 1 -1.4039 -1.0173 11.3589 37 1 -0.6718 2.4784 6.4632 38 1 0.6438 3.1172 7.4777 39 1 0.5529 3.5592 5.7558 40 1 3.9125 2.0615 0.6450 41 1 3.7697 0.2950 0.6999 42 1 4.9402 1.8968 -1.3712 43 1 4.7175 0.1208 -1.3536 44 1 0.6385 1.8225 -1.6327 45 1 1.8394 3.1021 -1.2480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928499315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:26 Heat of formation + Delta-G solvation = -29.086521 kcal Electronic energy + Delta-G solvation = -27367.906034 eV Core-core repulsion = 23512.487833 eV Total energy + Delta-G solvation = -3855.418201 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.35315 -40.91513 -39.50643 -35.89546 -35.73287 -34.76285 -33.91404 -32.85126 -31.00299 -29.79659 -28.54650 -28.04905 -27.22951 -24.98748 -24.43986 -23.32416 -21.24332 -21.11096 -20.47230 -19.28826 -18.66690 -18.02756 -17.80410 -16.88812 -16.57800 -16.43626 -16.30626 -16.07310 -15.89764 -15.53060 -15.33715 -15.26826 -14.75881 -14.67260 -14.37958 -14.12464 -13.86006 -13.78633 -13.70778 -13.50520 -13.16195 -13.13388 -13.00773 -12.90941 -12.60141 -12.56234 -12.38254 -12.15606 -11.85543 -11.74163 -11.69252 -11.10861 -10.92429 -10.89244 -10.53889 -10.26982 -10.14016 -9.44085 -8.67307 -8.43386 -6.55455 0.65471 0.84822 1.30233 1.32861 1.33947 1.35304 1.45272 1.62591 2.24373 2.25218 2.53686 2.74894 2.89132 3.35380 3.44878 3.64443 3.71484 3.74196 4.07114 4.10839 4.13501 4.20218 4.20897 4.37002 4.39535 4.43950 4.50531 4.57814 4.64566 4.68062 4.69968 4.75120 4.82242 4.88265 4.95234 5.02542 5.05285 5.13554 5.17604 5.44217 5.62739 5.83273 6.11258 6.20495 6.47551 6.58155 6.79931 7.08486 7.33421 8.73065 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027179 B = 0.002258 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.963694 B =12398.778368 C =12456.618719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.370 6.370 3 C 0.111 3.889 4 C 0.106 3.894 5 N -0.709 5.709 6 C 0.607 3.393 7 O -0.581 6.581 8 C -0.329 4.329 9 C 0.081 3.919 10 N -0.333 5.333 11 N -0.338 5.338 12 C 0.233 3.767 13 C -0.553 4.553 14 H 0.025 0.975 15 C 0.023 3.977 16 N -0.935 5.935 17 Si 0.949 3.051 18 H -0.252 1.252 19 H -0.278 1.278 20 H -0.242 1.242 21 C 0.147 3.853 22 C -0.089 4.089 23 C -0.121 4.121 24 C -0.055 4.055 25 S -0.331 6.331 26 C -0.085 4.085 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.412 0.588 33 H 0.224 0.776 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.274 0.726 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.340 8.233 -22.564 26.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.289 6.289 3 C 0.069 3.931 4 C -0.020 4.020 5 N -0.361 5.361 6 C 0.397 3.603 7 O -0.462 6.462 8 C -0.344 4.344 9 C -0.106 4.106 10 N -0.153 5.153 11 N -0.115 5.115 12 C 0.114 3.886 13 C -0.591 4.591 14 H 0.044 0.956 15 C -0.178 4.178 16 N -0.573 5.573 17 Si 0.770 3.230 18 H -0.176 1.176 19 H -0.203 1.203 20 H -0.165 1.165 21 C 0.012 3.988 22 C -0.147 4.147 23 C -0.160 4.160 24 C -0.202 4.202 25 S -0.104 6.104 26 C -0.234 4.234 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.249 0.751 33 H 0.240 0.760 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.265 7.535 -22.590 25.932 hybrid contribution -0.564 0.299 1.325 1.471 sum 9.702 7.834 -21.265 24.651 Atomic orbital electron populations 1.22936 0.80492 1.03770 1.00416 1.88056 1.20463 1.25838 1.94562 1.22595 0.94474 0.84009 0.92056 1.21925 1.01522 0.96442 0.82097 1.45393 1.54902 1.31125 1.04673 1.17060 0.77997 0.82577 0.82712 1.90689 1.40890 1.27131 1.87525 1.19949 1.17111 1.04500 0.92884 1.24471 0.96991 0.94542 0.94592 1.77099 1.18378 1.13777 1.06021 1.48760 1.36465 1.17937 1.08336 1.19890 0.97465 0.99156 0.72131 1.21183 1.09669 1.34673 0.93570 0.95615 1.25825 0.95991 0.94942 1.00997 1.70027 1.26012 1.41224 1.20058 0.85704 0.80145 0.79413 0.77760 1.17598 1.20327 1.16520 1.21995 0.94032 0.93004 0.89761 1.20598 0.97746 0.92991 1.03348 1.22037 0.90073 1.06265 0.97578 1.23983 0.97016 1.06980 0.92269 1.88094 1.16979 1.81815 1.23506 1.24964 1.01535 1.03261 0.93606 0.92636 0.88758 0.94102 0.89439 0.91087 0.75144 0.76007 0.92571 0.91105 0.91658 0.90545 0.90167 0.87653 0.87598 0.88141 0.87345 0.87583 0.86674 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.24 113.37 1.16 1.46 16 2 O -0.37 -6.07 9.95 -148.98 -1.48 -7.55 16 3 C 0.11 1.41 0.43 -10.07 0.00 1.41 16 4 C 0.11 1.65 3.86 86.38 0.33 1.98 16 5 N -0.71 -13.82 5.21 -466.36 -2.43 -16.25 16 6 C 0.61 17.54 7.81 86.66 0.68 18.22 16 7 O -0.58 -19.82 14.84 -4.03 -0.06 -19.88 16 8 C -0.33 -10.96 6.13 -20.15 -0.12 -11.08 16 9 C 0.08 2.54 11.50 85.65 0.99 3.52 16 10 N -0.33 -13.59 12.50 -56.27 -0.70 -14.30 16 11 N -0.34 -14.62 3.56 -336.69 -1.20 -15.82 16 12 C 0.23 10.66 5.04 85.63 0.43 11.09 16 13 C -0.55 -30.93 9.94 25.60 0.25 -30.67 16 14 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 15 C 0.02 1.25 5.47 84.66 0.46 1.71 16 16 N -0.94 -56.11 13.96 21.45 0.30 -55.81 16 17 Si 0.95 39.86 27.47 68.60 1.88 41.74 16 18 H -0.25 -9.83 7.11 99.48 0.71 -9.13 16 19 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.24 -9.27 6.54 99.48 0.65 -8.62 16 21 C 0.15 5.69 7.01 42.14 0.30 5.98 16 22 C -0.09 -3.03 9.57 71.24 0.68 -2.34 16 23 C -0.12 -1.19 4.94 30.81 0.15 -1.04 16 24 C -0.05 -0.56 7.38 72.22 0.53 -0.03 16 25 S -0.33 -5.29 23.13 -56.49 -1.31 -6.59 16 26 C -0.09 -1.02 6.34 72.72 0.46 -0.56 16 27 H 0.06 0.69 6.26 -2.39 -0.01 0.67 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 0.70 6.41 -2.39 -0.02 0.68 16 30 H 0.09 1.26 8.09 -2.38 -0.02 1.24 16 31 H 0.07 1.26 6.56 -2.38 -0.02 1.25 16 32 H 0.41 6.51 6.66 -92.71 -0.62 5.90 16 33 H 0.22 4.47 7.50 -2.91 -0.02 4.45 16 34 H 0.06 2.53 7.20 -2.39 -0.02 2.51 16 35 H 0.07 2.88 6.44 -2.39 -0.02 2.86 16 36 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 37 H 0.08 2.73 8.14 -2.39 -0.02 2.72 16 38 H 0.08 2.51 7.05 -2.39 -0.02 2.50 16 39 H 0.10 3.33 6.50 -2.39 -0.02 3.31 16 40 H 0.11 0.80 7.76 -2.39 -0.02 0.78 16 41 H 0.10 0.93 7.76 -2.39 -0.02 0.92 16 42 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.12 1.32 6.17 -2.39 -0.01 1.31 16 45 H 0.12 1.06 8.11 -2.38 -0.02 1.04 16 Total: -1.00 -73.84 374.44 1.65 -72.19 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.35 Total: 22.63 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 6.30 Total: -0.36 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -4.03 Total: -102.18 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.54 Total: -27.43 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 1.88 Total: 41.74 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.31 Total: -6.59 kcal Total: -73.84 1.65 -72.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928499315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.103 kcal (2) G-P(sol) polarization free energy of solvation -73.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds