Wall clock time and date at job start Tue Mar 31 2020 22:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99854 * 2 1 4 4 C 1.50697 * 109.47005 * 179.97438 * 3 2 1 5 5 N 1.28654 * 124.71514 * 90.00554 * 4 3 2 6 6 C 1.33567 * 115.76098 * 179.97438 * 5 4 3 7 7 C 1.47265 * 123.13803 * 179.97438 * 6 5 4 8 8 O 1.21630 * 119.99970 * 180.02562 * 7 6 5 9 9 N 1.34779 * 120.00005 * 0.02562 * 7 6 5 10 10 C 1.46496 * 120.00004 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.88417 * 34.29992 * 10 9 7 12 12 C 1.54911 * 111.00908 * 270.42193 * 10 9 7 13 13 N 1.47426 * 104.82751 * 278.89928 * 12 10 9 14 14 C 1.36937 * 125.64724 * 155.83852 * 13 12 10 15 15 H 1.07992 * 120.00188 * 353.87882 * 14 13 12 16 16 C 1.38814 * 119.99699 * 173.88757 * 14 13 12 17 17 N 1.31613 * 120.00529 * 6.82514 * 16 14 13 18 18 Si 1.86801 * 119.99792 * 186.82536 * 16 14 13 19 19 H 1.48503 * 109.47465 * 94.98386 * 18 16 14 20 20 H 1.48504 * 109.47431 * 214.98747 * 18 16 14 21 21 H 1.48507 * 109.47067 * 334.98280 * 18 16 14 22 22 C 1.47019 * 108.70530 * 335.86740 * 13 12 10 23 23 C 1.54369 * 107.28974 * 1.09437 * 22 13 12 24 24 C 1.53006 * 110.70637 * 263.79766 * 23 22 13 25 25 C 1.52995 * 110.75961 * 140.50608 * 23 22 13 26 26 C 1.35207 * 113.71671 * 0.24004 * 6 5 4 27 27 S 1.70771 * 124.72156 * 269.99516 * 4 3 2 28 28 H 1.09000 * 109.46748 * 299.99900 * 1 2 3 29 29 H 1.08990 * 109.47330 * 59.99833 * 1 2 3 30 30 H 1.09006 * 109.46896 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47432 * 59.99974 * 3 2 1 32 32 H 1.09002 * 109.47386 * 300.00254 * 3 2 1 33 33 H 0.96998 * 120.00108 * 359.97438 * 9 7 6 34 34 H 1.09000 * 110.36593 * 37.72848 * 12 10 9 35 35 H 1.08997 * 110.36783 * 160.06046 * 12 10 9 36 36 H 0.97001 * 120.00231 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.88692 * 120.48021 * 22 13 12 38 38 H 1.09007 * 109.88550 * 241.49514 * 22 13 12 39 39 H 1.09000 * 109.46976 * 173.48263 * 24 23 22 40 40 H 1.08999 * 109.46867 * 293.47814 * 24 23 22 41 41 H 1.08995 * 109.47426 * 53.48514 * 24 23 22 42 42 H 1.09003 * 109.47217 * 306.49042 * 25 23 22 43 43 H 1.08998 * 109.47090 * 66.48679 * 25 23 22 44 44 H 1.09001 * 109.47185 * 186.48713 * 25 23 22 45 45 H 1.08000 * 125.58202 * 179.75570 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2433 1.1285 -1.0566 6 6 5.5586 1.0249 -0.8481 7 6 6.5431 0.9464 -1.9405 8 8 7.7286 0.8526 -1.6852 9 7 6.1304 0.9785 -3.2232 10 6 7.1098 0.9010 -4.3099 11 1 7.9467 0.2594 -4.0337 12 6 7.6026 2.3126 -4.7152 13 7 6.5513 2.8381 -5.6051 14 6 6.2927 4.1622 -5.8397 15 1 6.8167 4.9223 -5.2795 16 6 5.3568 4.5274 -6.7977 17 7 4.6221 3.6067 -7.3847 18 14 5.1403 6.3259 -7.2538 19 1 5.9629 6.6357 -8.4508 20 1 3.7103 6.5919 -7.5537 21 1 5.5753 7.1801 -6.1196 22 6 5.8260 1.7053 -6.1983 23 6 6.4449 0.4129 -5.6241 24 6 7.4932 -0.1569 -6.5819 25 6 5.3590 -0.6237 -5.3288 26 6 5.9011 0.9931 0.4594 27 16 4.4816 1.1100 1.4047 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 5.1850 1.0530 -3.4268 34 1 7.7052 2.9460 -3.8341 35 1 8.5513 2.2449 -5.2475 36 1 3.9684 3.8619 -8.0544 37 1 4.7705 1.7602 -5.9318 38 1 5.9356 1.7217 -7.2827 39 1 7.9979 -0.9992 -6.1088 40 1 7.0049 -0.4931 -7.4966 41 1 8.2234 0.6156 -6.8227 42 1 4.5948 -0.1780 -4.6921 43 1 4.9062 -0.9521 -6.2643 44 1 5.8024 -1.4794 -4.8196 45 1 6.9069 0.9092 0.8437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977646491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:03 Heat of formation + Delta-G solvation = -30.649864 kcal Electronic energy + Delta-G solvation = -27877.656738 eV Core-core repulsion = 24022.170746 eV Total energy + Delta-G solvation = -3855.485992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.74811 -40.58115 -39.26115 -38.60362 -35.67640 -34.41211 -32.99529 -32.64726 -29.63446 -29.20246 -28.16971 -27.64596 -26.99434 -26.18447 -24.75821 -22.75445 -21.89133 -20.96200 -20.22439 -19.61100 -18.90442 -17.73792 -17.59995 -17.27439 -16.84592 -16.59866 -16.52118 -16.29460 -15.75997 -15.56542 -15.18309 -14.94067 -14.81529 -14.53864 -14.20823 -13.78005 -13.69303 -13.66547 -13.27364 -13.17417 -13.09427 -13.00108 -12.90041 -12.66056 -12.51746 -12.36956 -12.04819 -11.88509 -11.78760 -11.65269 -11.27786 -11.17405 -10.95194 -10.77881 -10.71513 -10.69214 -10.21779 -9.91273 -8.86042 -7.86442 -5.20007 -0.61223 0.17596 0.49572 0.77909 1.43142 1.45102 1.53598 2.15823 2.22800 2.47660 2.63874 3.19783 3.31505 3.53069 3.64886 3.72706 3.94261 4.02332 4.06754 4.16546 4.17926 4.39126 4.40155 4.41543 4.55351 4.60776 4.64382 4.74040 4.76755 4.83015 4.85569 4.90616 4.97029 5.02236 5.19000 5.29562 5.33293 5.46440 5.50756 5.70715 5.77359 6.07012 6.18414 6.26881 6.57119 7.07626 7.10469 7.75734 8.41644 9.23764 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009864 B = 0.003612 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.989007 B = 7750.413117 C = 8633.726478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.408 6.408 3 C 0.138 3.862 4 C -0.006 4.006 5 N -0.456 5.456 6 C -0.018 4.018 7 C 0.588 3.412 8 O -0.570 6.570 9 N -0.684 5.684 10 C 0.147 3.853 11 H 0.104 0.896 12 C 0.125 3.875 13 N -0.619 5.619 14 C -0.245 4.245 15 H 0.071 0.929 16 C -0.056 4.056 17 N -0.943 5.943 18 Si 0.973 3.027 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.274 1.274 22 C 0.204 3.796 23 C -0.091 4.091 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.229 4.229 27 S 0.335 5.665 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.409 0.591 34 H 0.023 0.977 35 H 0.037 0.963 36 H 0.248 0.752 37 H 0.009 0.991 38 H 0.016 0.984 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.138 -9.857 18.973 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.328 6.328 3 C 0.059 3.941 4 C -0.285 4.285 5 N -0.173 5.173 6 C -0.153 4.153 7 C 0.373 3.627 8 O -0.451 6.451 9 N -0.333 5.333 10 C 0.041 3.959 11 H 0.122 0.878 12 C -0.001 4.001 13 N -0.345 5.345 14 C -0.374 4.374 15 H 0.089 0.911 16 C -0.250 4.250 17 N -0.591 5.591 18 Si 0.802 3.198 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.199 1.199 22 C 0.079 3.921 23 C -0.092 4.092 24 C -0.178 4.178 25 C -0.178 4.178 26 C -0.372 4.372 27 S 0.593 5.407 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.094 0.906 33 H 0.246 0.754 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.034 0.966 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.827 -9.923 19.540 22.676 hybrid contribution -0.050 1.501 -1.701 2.269 sum -5.877 -8.421 17.839 20.584 Atomic orbital electron populations 1.23003 0.78245 1.04263 1.01500 1.87898 1.22250 1.26829 1.95773 1.20959 0.82936 0.86126 1.04112 1.27102 1.02102 1.06346 0.92956 1.66860 1.03324 1.13755 1.33403 1.20242 0.90012 1.11173 0.93905 1.17400 0.86833 0.76025 0.82424 1.90742 1.17123 1.52879 1.84318 1.45742 1.11533 1.71382 1.04592 1.22132 0.91502 0.96317 0.85952 0.87800 1.22033 0.91916 0.93650 0.92523 1.44657 1.36029 1.01973 1.51867 1.19337 1.19138 0.82714 1.16182 0.91067 1.25540 0.98736 1.01613 0.99065 1.70163 1.25918 1.32524 1.30510 0.85142 0.76599 0.79965 0.78102 1.21323 1.21795 1.19864 1.21013 0.92885 0.83344 0.94860 1.22118 0.97177 0.96068 0.93885 1.21642 0.97365 1.00415 0.98415 1.21604 0.96994 0.97501 1.01715 1.27018 1.08421 1.05106 0.96675 1.82236 0.91038 1.60084 1.07376 0.91514 0.93489 0.88310 0.87170 0.90574 0.75434 0.95839 0.94575 0.94294 0.97289 0.96576 0.90413 0.91644 0.93658 0.93872 0.91564 0.91087 0.78026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.15 10.69 -148.98 -1.59 -9.74 16 3 C 0.14 2.50 6.51 71.24 0.46 2.97 16 4 C -0.01 -0.15 6.97 88.57 0.62 0.47 16 5 N -0.46 -14.22 10.12 -180.83 -1.83 -16.05 16 6 C -0.02 -0.57 6.70 40.56 0.27 -0.29 16 7 C 0.59 22.11 7.80 86.62 0.68 22.79 16 8 O -0.57 -23.25 16.40 -4.12 -0.07 -23.32 16 9 N -0.68 -26.26 4.62 -439.35 -2.03 -28.29 16 10 C 0.15 5.66 2.61 46.39 0.12 5.78 16 11 H 0.10 3.76 7.53 -2.38 -0.02 3.74 16 12 C 0.13 5.72 6.62 86.86 0.57 6.30 16 13 N -0.62 -33.01 3.39 -691.90 -2.35 -35.36 16 14 C -0.24 -14.30 10.26 84.03 0.86 -13.44 16 15 H 0.07 4.10 7.84 -2.91 -0.02 4.08 16 16 C -0.06 -3.24 5.48 84.86 0.47 -2.78 16 17 N -0.94 -56.87 10.36 21.65 0.22 -56.65 16 18 Si 0.97 46.86 29.56 68.60 2.03 48.89 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 20 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 21 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 22 C 0.20 10.09 4.55 86.75 0.39 10.48 16 23 C -0.09 -3.39 0.81 -50.98 -0.04 -3.43 16 24 C -0.12 -3.86 8.41 71.98 0.61 -3.25 16 25 C -0.12 -3.85 8.07 71.98 0.58 -3.27 16 26 C -0.23 -5.49 10.62 67.12 0.71 -4.78 16 27 S 0.34 5.49 22.92 -56.49 -1.29 4.19 16 28 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.41 16.29 6.54 -92.71 -0.61 15.68 16 34 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.04 1.61 7.80 -2.39 -0.02 1.59 16 36 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.01 0.50 7.17 -2.39 -0.02 0.48 16 38 H 0.02 0.89 7.07 -2.38 -0.02 0.88 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 41 H 0.04 1.57 7.58 -2.39 -0.02 1.55 16 42 H 0.04 1.47 6.42 -2.39 -0.02 1.45 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.20 4.20 8.03 -2.91 -0.02 4.18 16 Total: -1.00 -75.36 381.51 1.04 -74.31 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.40 Total: 22.92 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 7.55 Total: 19.10 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -5.98 Total: -136.35 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -1.66 Total: -33.06 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 16 Polarization: 5.49 SS G_CDS: -1.29 Total: 4.19 kcal Total: -75.36 1.04 -74.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977646491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.665 kcal (2) G-P(sol) polarization free energy of solvation -75.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds