Wall clock time and date at job start Tue Mar 31 2020 22:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.50701 * 109.46878 * 179.97438 * 3 2 1 5 5 N 1.28643 * 124.71773 * 89.99779 * 4 3 2 6 6 C 1.33567 * 115.76881 * 180.02562 * 5 4 3 7 7 C 1.47261 * 123.14350 * 180.02562 * 6 5 4 8 8 O 1.21628 * 119.99873 * 179.97438 * 7 6 5 9 9 N 1.34775 * 120.00421 * 359.97391 * 7 6 5 10 10 C 1.46499 * 120.00417 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.88262 * 328.87520 * 10 9 7 12 12 C 1.54903 * 111.00654 * 92.79871 * 10 9 7 13 13 N 1.47433 * 104.82912 * 81.06732 * 12 10 9 14 14 C 1.36934 * 125.64704 * 204.08086 * 13 12 10 15 15 H 1.08002 * 119.99896 * 180.02562 * 14 13 12 16 16 C 1.38816 * 120.00158 * 0.05388 * 14 13 12 17 17 N 1.31610 * 119.99784 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99870 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47063 * 90.00310 * 18 16 14 20 20 H 1.48498 * 109.47274 * 210.00005 * 18 16 14 21 21 H 1.48493 * 109.47413 * 330.00224 * 18 16 14 22 22 C 1.47025 * 108.70451 * 24.12884 * 13 12 10 23 23 C 1.54333 * 107.27004 * 358.93908 * 22 13 12 24 24 C 1.52993 * 110.71691 * 219.44523 * 23 22 13 25 25 C 1.52999 * 110.71570 * 96.17116 * 23 22 13 26 26 C 1.35210 * 113.71032 * 0.02562 * 6 5 4 27 27 S 1.70764 * 124.72122 * 269.69894 * 4 3 2 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 30 30 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 31 31 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 33 33 H 0.97001 * 119.99803 * 0.02562 * 9 7 6 34 34 H 1.08999 * 110.36941 * 199.90002 * 12 10 9 35 35 H 1.08993 * 110.37229 * 322.23184 * 12 10 9 36 36 H 0.96998 * 120.00495 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.87946 * 239.52455 * 22 13 12 38 38 H 1.08998 * 109.88290 * 118.35392 * 22 13 12 39 39 H 1.09008 * 109.46708 * 173.52492 * 24 23 22 40 40 H 1.09001 * 109.47292 * 293.51876 * 24 23 22 41 41 H 1.08995 * 109.47726 * 53.52571 * 24 23 22 42 42 H 1.08995 * 109.47586 * 306.47273 * 25 23 22 43 43 H 1.09000 * 109.46994 * 66.48040 * 25 23 22 44 44 H 1.09004 * 109.46552 * 186.47697 * 25 23 22 45 45 H 1.08005 * 125.57949 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2433 1.1285 -1.0565 6 6 5.5584 1.0239 -0.8481 7 6 6.5430 0.9462 -1.9405 8 8 7.7284 0.8523 -1.6852 9 7 6.1305 0.9791 -3.2232 10 6 7.1099 0.9012 -4.3099 11 1 8.0560 1.3540 -4.0134 12 6 7.3143 -0.5640 -4.7692 13 7 6.1825 -0.8373 -5.6736 14 6 5.6683 -2.0744 -5.9572 15 1 4.8341 -2.1696 -6.6364 16 6 6.2190 -3.2059 -5.3712 17 7 7.2349 -3.0897 -4.5427 18 14 5.5171 -4.8933 -5.7576 19 1 6.2203 -5.4643 -6.9345 20 1 5.7050 -5.7875 -4.5870 21 1 4.0683 -4.7698 -6.0586 22 6 5.6980 0.4382 -6.2213 23 6 6.5595 1.5593 -5.6027 24 6 5.6998 2.7790 -5.2656 25 6 7.7032 1.9443 -6.5432 26 6 5.9012 0.9959 0.4595 27 16 4.4821 1.1174 1.4046 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 5.1851 1.0543 -3.4268 34 1 8.2593 -0.6659 -5.3028 35 1 7.2867 -1.2375 -3.9127 36 1 7.6196 -3.8803 -4.1329 37 1 4.6517 0.5835 -5.9523 38 1 5.8081 0.4416 -7.3057 39 1 6.3024 3.5107 -4.7273 40 1 5.3243 3.2248 -6.1868 41 1 4.8602 2.4709 -4.6426 42 1 8.2666 1.0517 -6.8148 43 1 7.2944 2.4039 -7.4432 44 1 8.3634 2.6520 -6.0416 45 1 6.9075 0.9162 0.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977646494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:06 Heat of formation + Delta-G solvation = -4.376080 kcal Electronic energy + Delta-G solvation = -28033.639809 eV Core-core repulsion = 24179.293133 eV Total energy + Delta-G solvation = -3854.346676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.40494 -39.14350 -38.07679 -37.41153 -33.75674 -32.94639 -31.66812 -30.63444 -28.30941 -28.22239 -26.92495 -26.22482 -25.56202 -24.82877 -23.06608 -21.41108 -20.15096 -19.67933 -18.89038 -18.26433 -16.84773 -16.66209 -16.46964 -16.04683 -15.88189 -15.43432 -14.98747 -14.59211 -14.23507 -13.84185 -13.75972 -13.70573 -13.45597 -13.08798 -12.91664 -12.64767 -12.45984 -12.12575 -12.02686 -11.84765 -11.70207 -11.67966 -11.22912 -11.10587 -10.92743 -10.73175 -10.36294 -10.15237 -10.08177 -9.92997 -9.91449 -9.76458 -9.72327 -9.62985 -9.58829 -9.01370 -8.62210 -8.26487 -6.74355 -5.56656 -2.99080 0.44234 1.13059 1.52874 2.02668 3.36925 3.44628 3.49077 3.51735 3.72025 3.76745 4.13784 4.54791 4.62940 4.94276 5.03503 5.05382 5.06491 5.16311 5.21653 5.31000 5.32348 5.38434 5.44602 5.59415 5.68935 5.85905 5.87826 5.95200 6.10102 6.15852 6.24848 6.35039 6.46248 6.55264 6.66774 6.76123 6.76611 6.82657 7.04862 7.37260 7.55638 7.68699 7.93932 8.11698 8.45212 8.69775 9.28528 9.90346 10.54517 11.46357 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008858 B = 0.004128 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.382338 B = 6781.888551 C = 8026.006079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.143 3.857 4 C 0.014 3.986 5 N -0.418 5.418 6 C 0.021 3.979 7 C 0.591 3.409 8 O -0.541 6.541 9 N -0.679 5.679 10 C 0.121 3.879 11 H 0.089 0.911 12 C 0.147 3.853 13 N -0.600 5.600 14 C -0.223 4.223 15 H 0.076 0.924 16 C -0.009 4.009 17 N -0.918 5.918 18 Si 0.912 3.088 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C 0.143 3.857 23 C -0.087 4.087 24 C -0.131 4.131 25 C -0.128 4.128 26 C -0.222 4.222 27 S 0.219 5.781 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.406 0.594 34 H 0.022 0.978 35 H 0.112 0.888 36 H 0.252 0.748 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.982 14.222 11.204 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C 0.063 3.937 4 C -0.265 4.265 5 N -0.135 5.135 6 C -0.114 4.114 7 C 0.373 3.627 8 O -0.419 6.419 9 N -0.328 5.328 10 C 0.016 3.984 11 H 0.107 0.893 12 C 0.021 3.979 13 N -0.327 5.327 14 C -0.351 4.351 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.743 3.257 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C 0.017 3.983 23 C -0.088 4.088 24 C -0.188 4.188 25 C -0.185 4.185 26 C -0.364 4.364 27 S 0.475 5.525 28 H 0.109 0.891 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.243 0.757 34 H 0.040 0.960 35 H 0.130 0.870 36 H 0.062 0.938 37 H 0.040 0.960 38 H 0.042 0.958 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -9.476 13.798 11.925 20.552 hybrid contribution -0.315 -0.890 -1.126 1.469 sum -9.791 12.908 10.799 19.471 Atomic orbital electron populations 1.22804 0.80048 1.03408 1.00172 1.88009 1.20236 1.26167 1.95469 1.20744 0.84402 0.86173 1.02375 1.26545 1.00633 1.07355 0.92013 1.66868 1.03304 1.12169 1.31207 1.20593 0.89810 1.07154 0.93872 1.16917 0.86473 0.77234 0.82030 1.90790 1.16106 1.51196 1.83760 1.45608 1.11440 1.71278 1.04435 1.22608 0.90990 1.00319 0.84506 0.89265 1.22307 0.89191 0.90122 0.96286 1.44450 1.36048 1.00709 1.51445 1.19024 1.11832 0.82072 1.22161 0.90588 1.24776 0.98263 0.97815 0.99651 1.69795 1.25806 1.27452 1.33568 0.86113 0.78275 0.84171 0.77171 1.21690 1.21758 1.20775 1.21415 0.95005 0.85943 0.95928 1.21849 0.96494 0.95079 0.95425 1.21713 0.99312 0.96941 1.00874 1.21683 0.97290 1.01425 0.98125 1.26660 1.06014 1.06843 0.96865 1.82628 0.95014 1.63627 1.11205 0.89101 0.93859 0.93515 0.90933 0.89925 0.75745 0.96036 0.87009 0.93760 0.96022 0.95834 0.92948 0.92782 0.92734 0.91728 0.92708 0.93080 0.79127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.55 10.69 -35.23 -0.38 -4.93 16 3 C 0.14 1.42 6.51 36.01 0.23 1.66 16 4 C 0.01 0.18 6.97 -13.61 -0.09 0.08 16 5 N -0.42 -6.75 10.12 -8.51 -0.09 -6.84 16 6 C 0.02 0.36 6.70 -84.52 -0.57 -0.20 16 7 C 0.59 11.91 7.80 -12.59 -0.10 11.81 16 8 O -0.54 -12.15 16.35 5.25 0.09 -12.07 16 9 N -0.68 -13.42 4.54 -52.85 -0.24 -13.66 16 10 C 0.12 2.48 2.67 -65.78 -0.18 2.30 16 11 H 0.09 1.83 7.44 -51.93 -0.39 1.44 16 12 C 0.15 3.73 5.27 -2.53 -0.01 3.72 16 13 N -0.60 -15.57 3.39 -170.07 -0.58 -16.15 16 14 C -0.22 -6.34 10.27 -15.06 -0.15 -6.50 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 17 N -0.92 -27.95 10.09 55.49 0.56 -27.39 16 18 Si 0.91 22.90 29.55 -169.99 -5.02 17.88 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.14 3.00 6.41 -3.06 -0.02 2.98 16 23 C -0.09 -1.53 0.80 -152.67 -0.12 -1.65 16 24 C -0.13 -1.89 8.07 37.15 0.30 -1.59 16 25 C -0.13 -2.00 8.41 37.16 0.31 -1.69 16 26 C -0.22 -3.11 10.62 29.65 0.31 -2.79 16 27 S 0.22 2.31 22.92 -107.50 -2.46 -0.16 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.41 7.81 6.70 -40.82 -0.27 7.53 16 34 H 0.02 0.59 7.80 -51.93 -0.41 0.18 16 35 H 0.11 3.32 5.87 -51.93 -0.30 3.02 16 36 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.02 0.45 7.76 -51.93 -0.40 0.05 16 38 H 0.02 0.50 7.84 -51.93 -0.41 0.09 16 39 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.80 6.48 -51.93 -0.34 0.46 16 42 H 0.06 1.14 7.57 -51.93 -0.39 0.75 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.19 2.43 8.03 -52.48 -0.42 2.01 16 LS Contribution 380.89 15.07 5.74 5.74 Total: -1.00 -34.74 380.89 -8.13 -42.87 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.68 Total: 5.57 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 0.93 Total: 9.13 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.34 Total: -64.04 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.29 Total: -17.00 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.46 Total: -0.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.74 -8.13 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977646494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.498 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds