Wall clock time and date at job start Tue Mar 31 2020 22:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.50701 * 109.46878 * 179.97438 * 3 2 1 5 5 N 1.28643 * 124.71773 * 89.99779 * 4 3 2 6 6 C 1.33567 * 115.76881 * 180.02562 * 5 4 3 7 7 C 1.47261 * 123.14350 * 180.02562 * 6 5 4 8 8 O 1.21628 * 119.99873 * 179.97438 * 7 6 5 9 9 N 1.34775 * 120.00421 * 359.97391 * 7 6 5 10 10 C 1.46499 * 120.00417 * 180.02562 * 9 7 6 11 11 H 1.08997 * 110.88262 * 328.87520 * 10 9 7 12 12 C 1.54903 * 111.00654 * 92.79871 * 10 9 7 13 13 N 1.47433 * 104.82912 * 81.06732 * 12 10 9 14 14 C 1.36934 * 125.64704 * 204.08086 * 13 12 10 15 15 H 1.08002 * 119.99896 * 180.02562 * 14 13 12 16 16 C 1.38816 * 120.00158 * 0.05388 * 14 13 12 17 17 N 1.31610 * 119.99784 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99870 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47063 * 90.00310 * 18 16 14 20 20 H 1.48498 * 109.47274 * 210.00005 * 18 16 14 21 21 H 1.48493 * 109.47413 * 330.00224 * 18 16 14 22 22 C 1.47025 * 108.70451 * 24.12884 * 13 12 10 23 23 C 1.54333 * 107.27004 * 358.93908 * 22 13 12 24 24 C 1.52993 * 110.71691 * 219.44523 * 23 22 13 25 25 C 1.52999 * 110.71570 * 96.17116 * 23 22 13 26 26 C 1.35210 * 113.71032 * 0.02562 * 6 5 4 27 27 S 1.70764 * 124.72122 * 269.69894 * 4 3 2 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 30 30 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 31 31 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 33 33 H 0.97001 * 119.99803 * 0.02562 * 9 7 6 34 34 H 1.08999 * 110.36941 * 199.90002 * 12 10 9 35 35 H 1.08993 * 110.37229 * 322.23184 * 12 10 9 36 36 H 0.96998 * 120.00495 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.87946 * 239.52455 * 22 13 12 38 38 H 1.08998 * 109.88290 * 118.35392 * 22 13 12 39 39 H 1.09008 * 109.46708 * 173.52492 * 24 23 22 40 40 H 1.09001 * 109.47292 * 293.51876 * 24 23 22 41 41 H 1.08995 * 109.47726 * 53.52571 * 24 23 22 42 42 H 1.08995 * 109.47586 * 306.47273 * 25 23 22 43 43 H 1.09000 * 109.46994 * 66.48040 * 25 23 22 44 44 H 1.09004 * 109.46552 * 186.47697 * 25 23 22 45 45 H 1.08005 * 125.57949 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2433 1.1285 -1.0565 6 6 5.5584 1.0239 -0.8481 7 6 6.5430 0.9462 -1.9405 8 8 7.7284 0.8523 -1.6852 9 7 6.1305 0.9791 -3.2232 10 6 7.1099 0.9012 -4.3099 11 1 8.0560 1.3540 -4.0134 12 6 7.3143 -0.5640 -4.7692 13 7 6.1825 -0.8373 -5.6736 14 6 5.6683 -2.0744 -5.9572 15 1 4.8341 -2.1696 -6.6364 16 6 6.2190 -3.2059 -5.3712 17 7 7.2349 -3.0897 -4.5427 18 14 5.5171 -4.8933 -5.7576 19 1 6.2203 -5.4643 -6.9345 20 1 5.7050 -5.7875 -4.5870 21 1 4.0683 -4.7698 -6.0586 22 6 5.6980 0.4382 -6.2213 23 6 6.5595 1.5593 -5.6027 24 6 5.6998 2.7790 -5.2656 25 6 7.7032 1.9443 -6.5432 26 6 5.9012 0.9959 0.4595 27 16 4.4821 1.1174 1.4046 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 5.1851 1.0543 -3.4268 34 1 8.2593 -0.6659 -5.3028 35 1 7.2867 -1.2375 -3.9127 36 1 7.6196 -3.8803 -4.1329 37 1 4.6517 0.5835 -5.9523 38 1 5.8081 0.4416 -7.3057 39 1 6.3024 3.5107 -4.7273 40 1 5.3243 3.2248 -6.1868 41 1 4.8602 2.4709 -4.6426 42 1 8.2666 1.0517 -6.8148 43 1 7.2944 2.4039 -7.4432 44 1 8.3634 2.6520 -6.0416 45 1 6.9075 0.9162 0.8438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977646494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:05 Heat of formation + Delta-G solvation = -30.069699 kcal Electronic energy + Delta-G solvation = -28034.753967 eV Core-core repulsion = 24179.293133 eV Total energy + Delta-G solvation = -3855.460835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.71817 -40.56558 -39.25166 -38.59813 -35.69821 -34.54079 -32.67321 -32.62099 -29.98645 -29.18228 -28.17820 -27.48895 -26.98692 -26.15367 -24.69168 -22.73715 -21.91050 -20.99293 -20.29248 -19.59735 -18.73072 -17.83815 -17.59909 -17.20535 -16.90250 -16.66040 -16.49694 -16.20116 -15.72540 -15.48942 -15.28656 -14.96832 -14.74921 -14.65622 -14.14625 -13.75232 -13.70430 -13.67127 -13.15212 -13.09495 -13.04415 -13.01623 -12.83362 -12.65388 -12.60424 -12.35155 -12.12078 -11.83093 -11.79977 -11.50432 -11.39282 -11.23623 -10.96829 -10.78484 -10.77118 -10.66862 -10.15833 -9.85909 -8.86488 -7.77300 -5.22206 -0.60868 0.18439 0.50215 0.80449 1.41389 1.44240 1.52605 2.12020 2.34613 2.47121 2.68258 3.21207 3.32471 3.54123 3.66236 3.74104 3.95117 4.04113 4.05637 4.17366 4.19824 4.39081 4.42588 4.48879 4.54073 4.61493 4.65428 4.78366 4.82857 4.84986 4.89503 4.91154 5.01176 5.09111 5.17877 5.26140 5.30114 5.45588 5.51053 5.63970 5.80005 6.11239 6.27204 6.29389 6.61128 7.07448 7.15105 7.77236 8.41211 9.23635 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008858 B = 0.004128 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.382338 B = 6781.888551 C = 8026.006079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.139 3.861 4 C -0.005 4.005 5 N -0.451 5.451 6 C -0.014 4.014 7 C 0.584 3.416 8 O -0.576 6.576 9 N -0.676 5.676 10 C 0.132 3.868 11 H 0.087 0.913 12 C 0.156 3.844 13 N -0.618 5.618 14 C -0.233 4.233 15 H 0.083 0.917 16 C -0.069 4.069 17 N -0.949 5.949 18 Si 0.978 3.022 19 H -0.284 1.284 20 H -0.298 1.298 21 H -0.267 1.267 22 C 0.139 3.861 23 C -0.074 4.074 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.235 4.235 27 S 0.332 5.668 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.409 0.591 34 H -0.008 1.008 35 H 0.066 0.934 36 H 0.243 0.757 37 H 0.028 0.972 38 H 0.030 0.970 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.036 0.964 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 16.130 12.121 23.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C 0.060 3.940 4 C -0.284 4.284 5 N -0.168 5.168 6 C -0.150 4.150 7 C 0.369 3.631 8 O -0.457 6.457 9 N -0.325 5.325 10 C 0.026 3.974 11 H 0.105 0.895 12 C 0.029 3.971 13 N -0.344 5.344 14 C -0.362 4.362 15 H 0.101 0.899 16 C -0.262 4.262 17 N -0.599 5.599 18 Si 0.806 3.194 19 H -0.211 1.211 20 H -0.225 1.225 21 H -0.192 1.192 22 C 0.014 3.986 23 C -0.075 4.075 24 C -0.180 4.180 25 C -0.182 4.182 26 C -0.378 4.378 27 S 0.589 5.411 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.010 0.990 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -12.060 15.746 12.831 23.622 hybrid contribution 0.405 -1.478 -1.304 2.012 sum -11.655 14.268 11.527 21.732 Atomic orbital electron populations 1.22992 0.78143 1.04018 1.01768 1.87941 1.22429 1.27423 1.95809 1.21018 0.82451 0.85914 1.04597 1.27209 1.02297 1.06138 0.92765 1.66832 1.02902 1.13853 1.33250 1.20226 0.90146 1.10834 0.93759 1.17466 0.86826 0.76063 0.82762 1.90746 1.17766 1.52831 1.84371 1.45556 1.11288 1.71221 1.04402 1.22332 0.91757 0.97115 0.86244 0.89499 1.21937 0.88182 0.92670 0.94283 1.44680 1.36036 1.01789 1.51882 1.19444 1.11716 0.83411 1.21640 0.89871 1.25641 0.98937 1.01579 1.00005 1.70111 1.27331 1.27614 1.34890 0.85080 0.78280 0.79472 0.76553 1.21116 1.22535 1.19183 1.21636 0.95782 0.84970 0.96216 1.21845 0.96989 0.95187 0.93453 1.21660 0.98650 0.95386 1.02284 1.21681 0.96709 1.00830 0.98969 1.26993 1.08432 1.05427 0.96939 1.82180 0.90958 1.60312 1.07610 0.89099 0.91204 0.92941 0.86866 0.89540 0.75400 0.99003 0.91603 0.94765 0.95401 0.95192 0.91634 0.90108 0.93149 0.94501 0.89978 0.91086 0.78606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -9.18 10.69 -148.98 -1.59 -10.77 16 3 C 0.14 2.42 6.51 71.24 0.46 2.88 16 4 C -0.01 -0.13 6.97 88.58 0.62 0.49 16 5 N -0.45 -14.44 10.12 -180.84 -1.83 -16.27 16 6 C -0.01 -0.49 6.70 40.55 0.27 -0.22 16 7 C 0.58 24.59 7.80 86.62 0.68 25.26 16 8 O -0.58 -27.33 16.35 -4.12 -0.07 -27.40 16 9 N -0.68 -27.66 4.54 -439.38 -2.00 -29.66 16 10 C 0.13 5.56 2.67 46.38 0.12 5.68 16 11 H 0.09 3.71 7.44 -2.39 -0.02 3.69 16 12 C 0.16 8.40 5.27 86.85 0.46 8.86 16 13 N -0.62 -33.07 3.39 -691.96 -2.35 -35.42 16 14 C -0.23 -13.60 10.27 84.03 0.86 -12.74 16 15 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 16 C -0.07 -4.16 5.49 84.86 0.47 -3.69 16 17 N -0.95 -60.91 10.09 21.65 0.22 -60.69 16 18 Si 0.98 48.25 29.55 68.60 2.03 50.28 16 19 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 22 C 0.14 5.79 6.41 86.73 0.56 6.35 16 23 C -0.07 -2.53 0.80 -50.99 -0.04 -2.57 16 24 C -0.12 -3.23 8.07 71.98 0.58 -2.65 16 25 C -0.12 -3.74 8.41 71.98 0.61 -3.13 16 26 C -0.23 -6.45 10.62 67.12 0.71 -5.74 16 27 S 0.33 6.08 22.92 -56.49 -1.29 4.78 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.41 16.09 6.70 -92.71 -0.62 15.47 16 34 H -0.01 -0.45 7.80 -2.39 -0.02 -0.47 16 35 H 0.07 4.20 5.87 -2.39 -0.01 4.19 16 36 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.03 1.14 7.76 -2.39 -0.02 1.12 16 38 H 0.03 1.23 7.84 -2.39 -0.02 1.21 16 39 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.38 6.48 -2.39 -0.02 1.37 16 42 H 0.04 1.30 7.57 -2.39 -0.02 1.28 16 43 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 45 H 0.20 4.98 8.03 -2.91 -0.02 4.96 16 Total: -1.00 -81.09 380.89 1.10 -79.99 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.39 Total: 24.77 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 7.60 Total: 20.39 kcal Atomic # 7 Polarization: -136.08 SS G_CDS: -5.96 Total: -142.03 kcal Atomic # 8 Polarization: -36.52 SS G_CDS: -1.66 Total: -38.17 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.29 Total: 4.78 kcal Total: -81.09 1.10 -79.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977646494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.920 kcal (2) G-P(sol) polarization free energy of solvation -81.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds