Wall clock time and date at job start Tue Mar 31 2020 22:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.50701 * 109.46878 * 179.97438 * 3 2 1 5 5 N 1.29429 * 124.80067 * 89.69604 * 4 3 2 6 6 C 1.30949 * 117.36235 * 179.76438 * 5 4 3 7 7 C 1.35671 * 114.18875 * 0.52146 * 6 5 4 8 8 C 1.46681 * 126.12923 * 179.75015 * 7 6 5 9 9 O 1.21686 * 120.00123 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00006 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00076 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.64109 * 31.85325 * 11 10 8 13 13 C 1.54325 * 110.71979 * 268.51730 * 11 10 8 14 14 N 1.47023 * 107.27378 * 263.83226 * 13 11 10 15 15 C 1.36935 * 125.64808 * 181.02064 * 14 13 11 16 16 H 1.08001 * 119.99958 * 180.02562 * 15 14 13 17 17 C 1.38816 * 120.00109 * 0.04370 * 15 14 13 18 18 N 1.31623 * 119.99758 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99969 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46745 * 90.00161 * 19 17 15 21 21 H 1.48498 * 109.47098 * 209.99737 * 19 17 15 22 22 H 1.48501 * 109.47271 * 330.00196 * 19 17 15 23 23 C 1.47426 * 108.70204 * 1.05964 * 14 13 11 24 24 C 1.54909 * 104.83156 * 335.87081 * 23 14 13 25 25 C 1.53006 * 111.00715 * 278.93951 * 24 23 14 26 26 C 1.52993 * 111.00389 * 155.08768 * 24 23 14 27 27 S 1.70951 * 124.80463 * 269.99971 * 4 3 2 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 30 30 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 31 31 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 33 33 H 1.07998 * 122.90477 * 180.24703 * 6 5 4 34 34 H 0.97001 * 119.99981 * 359.97438 * 10 8 7 35 35 H 1.09008 * 109.87996 * 23.24870 * 13 11 10 36 36 H 1.08992 * 109.88229 * 144.41049 * 13 11 10 37 37 H 0.96996 * 119.99423 * 180.02562 * 18 17 15 38 38 H 1.09006 * 110.36341 * 217.03566 * 23 14 13 39 39 H 1.08994 * 110.36906 * 94.71009 * 23 14 13 40 40 H 1.08990 * 109.47259 * 172.19416 * 25 24 23 41 41 H 1.09002 * 109.46937 * 292.19884 * 25 24 23 42 42 H 1.08999 * 109.47187 * 52.19129 * 25 24 23 43 43 H 1.09002 * 109.47143 * 307.80182 * 26 24 23 44 44 H 1.08994 * 109.47473 * 67.80409 * 26 24 23 45 45 H 1.09000 * 109.47571 * 187.80599 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2488 1.1224 -1.0618 6 6 5.5436 1.0256 -0.8918 7 6 5.9329 0.9950 0.4075 8 6 7.3121 0.8863 0.8947 9 8 8.2332 0.8132 0.1029 10 7 7.5592 0.8664 2.2195 11 6 8.9368 0.7584 2.7061 12 1 9.6270 1.2447 2.0168 13 6 9.3253 -0.7194 2.9220 14 7 9.1131 -1.0232 4.3448 15 6 9.3599 -2.2269 4.9493 16 1 9.1698 -2.3499 6.0053 17 6 9.8546 -3.2890 4.2048 18 7 10.0861 -3.1391 2.9178 19 14 10.1919 -4.9307 5.0296 20 1 8.9731 -5.7767 4.9650 21 1 11.3079 -5.6163 4.3297 22 1 10.5627 -4.7044 6.4496 23 6 8.5899 0.1824 5.0127 24 6 9.0651 1.3629 4.1293 25 6 10.5175 1.7305 4.4400 26 6 8.1474 2.5758 4.2948 27 16 4.4846 1.1098 1.4047 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 6.2409 0.9703 -1.7147 34 1 6.8250 0.9243 2.8507 35 1 8.6946 -1.3621 2.3077 36 1 10.3735 -0.8687 2.6634 37 1 10.4314 -3.8814 2.3976 38 1 9.0041 0.2696 6.0172 39 1 7.5011 0.1522 5.0517 40 1 10.8695 2.4646 3.7154 41 1 10.5790 2.1518 5.4434 42 1 11.1387 0.8367 4.3827 43 1 7.1125 2.2727 4.1359 44 1 8.2572 2.9799 5.3011 45 1 8.4185 3.3389 3.5653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977665863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:58 Heat of formation + Delta-G solvation = -2.897999 kcal Electronic energy + Delta-G solvation = -27494.307743 eV Core-core repulsion = 23640.025162 eV Total energy + Delta-G solvation = -3854.282581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.26827 -39.53408 -38.19931 -37.71823 -33.93010 -33.10728 -31.72078 -30.70806 -29.06292 -27.88395 -26.87187 -26.41193 -25.64439 -24.33336 -23.45931 -21.76193 -20.14198 -19.80901 -18.78605 -18.49420 -16.97732 -16.87796 -16.70818 -16.18977 -15.80882 -15.38379 -15.07481 -14.76801 -14.48105 -14.02621 -13.95356 -13.86633 -13.70717 -13.26264 -13.01505 -12.74294 -12.59217 -12.10494 -12.00565 -11.84194 -11.73217 -11.68255 -11.39639 -11.10118 -11.00433 -10.77484 -10.43346 -10.30790 -10.26055 -10.05659 -10.03915 -9.89272 -9.72038 -9.64876 -9.62666 -9.15690 -8.65168 -8.52855 -6.83348 -5.68859 -3.03871 0.06110 0.98584 1.41927 2.32176 3.21580 3.40302 3.41092 3.42184 3.45931 3.48526 4.02001 4.50459 4.51961 4.83125 4.88309 4.92960 4.95795 4.99298 5.04429 5.22045 5.24579 5.27530 5.31220 5.53474 5.61348 5.77224 5.89461 5.95031 5.98652 6.13737 6.16073 6.20415 6.35018 6.53431 6.57900 6.61416 6.63211 6.65471 6.90883 7.41508 7.53245 7.60718 7.73453 7.85286 8.25172 8.38945 9.21986 9.82776 10.47746 11.41878 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.003252 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.152760 B = 8608.730453 C = 9660.626773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.139 3.861 4 C 0.039 3.961 5 N -0.458 5.458 6 C 0.109 3.891 7 C -0.270 4.270 8 C 0.592 3.408 9 O -0.522 6.522 10 N -0.701 5.701 11 C 0.123 3.877 12 H 0.094 0.906 13 C 0.174 3.826 14 N -0.602 5.602 15 C -0.231 4.231 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.911 3.089 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.143 3.857 24 C -0.090 4.090 25 C -0.125 4.125 26 C -0.131 4.131 27 S 0.195 5.805 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.191 0.809 34 H 0.393 0.607 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.253 0.747 38 H 0.043 0.957 39 H 0.014 0.986 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.037 14.344 -2.286 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.060 3.940 4 C -0.236 4.236 5 N -0.174 5.174 6 C -0.048 4.048 7 C -0.395 4.395 8 C 0.376 3.624 9 O -0.400 6.400 10 N -0.351 5.351 11 C 0.019 3.981 12 H 0.112 0.888 13 C 0.049 3.951 14 N -0.329 5.329 15 C -0.359 4.359 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.742 3.258 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.016 3.984 24 C -0.091 4.091 25 C -0.183 4.183 26 C -0.189 4.189 27 S 0.451 5.549 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.208 0.792 34 H 0.228 0.772 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.032 0.968 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.679 13.925 -2.304 21.096 hybrid contribution 0.143 -0.899 -0.092 0.915 sum -15.536 13.026 -2.396 20.416 Atomic orbital electron populations 1.22818 0.79903 1.03462 1.00294 1.87999 1.20371 1.26076 1.95507 1.20808 0.84378 0.86258 1.02600 1.26874 1.00547 1.04410 0.91789 1.66142 1.04948 1.15016 1.31260 1.22173 0.90460 0.96470 0.95702 1.26075 0.98497 1.17053 0.97887 1.16626 0.85558 0.77248 0.82995 1.90848 1.43951 1.50049 1.55155 1.45925 1.10260 1.73349 1.05543 1.22596 0.81090 1.00266 0.94197 0.88848 1.21544 1.00425 0.87459 0.85689 1.44430 1.76021 1.07730 1.04674 1.19011 1.37148 0.86641 0.93079 0.90451 1.24815 1.01428 0.98227 0.95853 1.69954 1.50336 1.30879 1.05332 0.86138 0.77548 0.83916 0.78239 1.21683 1.21698 1.20731 1.21643 0.95471 0.86124 0.95122 1.22033 0.96622 0.95126 0.95361 1.21596 0.94622 1.01739 1.00356 1.21683 0.98607 0.97203 1.01440 1.83872 0.96690 1.63592 1.10773 0.89025 0.93629 0.93587 0.90669 0.89821 0.79183 0.77154 0.93318 0.92527 0.93657 0.93922 0.96801 0.93272 0.92801 0.91099 0.93274 0.92457 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.99 10.69 -35.23 -0.38 -4.36 16 3 C 0.14 1.23 6.51 36.01 0.23 1.46 16 4 C 0.04 0.46 7.01 -13.29 -0.09 0.37 16 5 N -0.46 -6.34 10.51 -11.50 -0.12 -6.47 16 6 C 0.11 1.57 11.09 -18.85 -0.21 1.36 16 7 C -0.27 -4.04 6.49 -37.09 -0.24 -4.28 16 8 C 0.59 10.54 7.79 -12.86 -0.10 10.44 16 9 O -0.52 -10.99 16.51 5.20 0.09 -10.90 16 10 N -0.70 -11.92 4.45 -53.34 -0.24 -12.16 16 11 C 0.12 2.33 2.59 -66.10 -0.17 2.15 16 12 H 0.09 1.82 7.45 -51.93 -0.39 1.43 16 13 C 0.17 4.25 4.79 -3.06 -0.01 4.24 16 14 N -0.60 -14.87 3.38 -170.07 -0.57 -15.44 16 15 C -0.23 -6.33 10.28 -15.06 -0.15 -6.48 16 16 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 18 N -0.92 -27.33 10.31 55.49 0.57 -26.76 16 19 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.14 2.78 6.12 -2.53 -0.02 2.76 16 24 C -0.09 -1.46 0.83 -152.36 -0.13 -1.59 16 25 C -0.13 -1.95 8.57 37.16 0.32 -1.63 16 26 C -0.13 -1.66 8.22 37.15 0.31 -1.36 16 27 S 0.19 2.28 22.31 -107.50 -2.40 -0.12 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.19 2.55 8.06 -52.49 -0.42 2.12 16 34 H 0.39 5.94 6.29 -40.82 -0.26 5.68 16 35 H 0.05 1.37 7.41 -51.92 -0.38 0.99 16 36 H 0.06 1.55 7.38 -51.93 -0.38 1.17 16 37 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 39 H 0.01 0.27 7.98 -51.93 -0.41 -0.14 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 43 H 0.05 0.58 6.48 -51.93 -0.34 0.24 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 382.25 15.07 5.76 5.76 Total: -1.00 -33.74 382.25 -8.33 -42.07 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.77 Total: 2.68 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 0.75 Total: 8.48 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.36 Total: -60.82 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.29 Total: -15.26 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.40 Total: -0.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.74 -8.33 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977665863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.171 kcal (2) G-P(sol) polarization free energy of solvation -33.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds