Wall clock time and date at job start Tue Mar 31 2020 22:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.50701 * 109.46878 * 179.97438 * 3 2 1 5 5 N 1.29429 * 124.80067 * 89.69604 * 4 3 2 6 6 C 1.30949 * 117.36235 * 179.76438 * 5 4 3 7 7 C 1.35671 * 114.18875 * 0.52146 * 6 5 4 8 8 C 1.46681 * 126.12923 * 179.75015 * 7 6 5 9 9 O 1.21686 * 120.00123 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00006 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00076 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.64109 * 31.85325 * 11 10 8 13 13 C 1.54325 * 110.71979 * 268.51730 * 11 10 8 14 14 N 1.47023 * 107.27378 * 263.83226 * 13 11 10 15 15 C 1.36935 * 125.64808 * 181.02064 * 14 13 11 16 16 H 1.08001 * 119.99958 * 180.02562 * 15 14 13 17 17 C 1.38816 * 120.00109 * 0.04370 * 15 14 13 18 18 N 1.31623 * 119.99758 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99969 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46745 * 90.00161 * 19 17 15 21 21 H 1.48498 * 109.47098 * 209.99737 * 19 17 15 22 22 H 1.48501 * 109.47271 * 330.00196 * 19 17 15 23 23 C 1.47426 * 108.70204 * 1.05964 * 14 13 11 24 24 C 1.54909 * 104.83156 * 335.87081 * 23 14 13 25 25 C 1.53006 * 111.00715 * 278.93951 * 24 23 14 26 26 C 1.52993 * 111.00389 * 155.08768 * 24 23 14 27 27 S 1.70951 * 124.80463 * 269.99971 * 4 3 2 28 28 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 30 30 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 31 31 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 32 32 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 33 33 H 1.07998 * 122.90477 * 180.24703 * 6 5 4 34 34 H 0.97001 * 119.99981 * 359.97438 * 10 8 7 35 35 H 1.09008 * 109.87996 * 23.24870 * 13 11 10 36 36 H 1.08992 * 109.88229 * 144.41049 * 13 11 10 37 37 H 0.96996 * 119.99423 * 180.02562 * 18 17 15 38 38 H 1.09006 * 110.36341 * 217.03566 * 23 14 13 39 39 H 1.08994 * 110.36906 * 94.71009 * 23 14 13 40 40 H 1.08990 * 109.47259 * 172.19416 * 25 24 23 41 41 H 1.09002 * 109.46937 * 292.19884 * 25 24 23 42 42 H 1.08999 * 109.47187 * 52.19129 * 25 24 23 43 43 H 1.09002 * 109.47143 * 307.80182 * 26 24 23 44 44 H 1.08994 * 109.47473 * 67.80409 * 26 24 23 45 45 H 1.09000 * 109.47571 * 187.80599 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 7 4.2488 1.1224 -1.0618 6 6 5.5436 1.0256 -0.8918 7 6 5.9329 0.9950 0.4075 8 6 7.3121 0.8863 0.8947 9 8 8.2332 0.8132 0.1029 10 7 7.5592 0.8664 2.2195 11 6 8.9368 0.7584 2.7061 12 1 9.6270 1.2447 2.0168 13 6 9.3253 -0.7194 2.9220 14 7 9.1131 -1.0232 4.3448 15 6 9.3599 -2.2269 4.9493 16 1 9.1698 -2.3499 6.0053 17 6 9.8546 -3.2890 4.2048 18 7 10.0861 -3.1391 2.9178 19 14 10.1919 -4.9307 5.0296 20 1 8.9731 -5.7767 4.9650 21 1 11.3079 -5.6163 4.3297 22 1 10.5627 -4.7044 6.4496 23 6 8.5899 0.1824 5.0127 24 6 9.0651 1.3629 4.1293 25 6 10.5175 1.7305 4.4400 26 6 8.1474 2.5758 4.2948 27 16 4.4846 1.1098 1.4047 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6885 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 6.2409 0.9703 -1.7147 34 1 6.8250 0.9243 2.8507 35 1 8.6946 -1.3621 2.3077 36 1 10.3735 -0.8687 2.6634 37 1 10.4314 -3.8814 2.3976 38 1 9.0041 0.2696 6.0172 39 1 7.5011 0.1522 5.0517 40 1 10.8695 2.4646 3.7154 41 1 10.5790 2.1518 5.4434 42 1 11.1387 0.8367 4.3827 43 1 7.1125 2.2727 4.1359 44 1 8.2572 2.9799 5.3011 45 1 8.4185 3.3389 3.5653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977665863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:58 Heat of formation + Delta-G solvation = -27.399447 kcal Electronic energy + Delta-G solvation = -27495.370206 eV Core-core repulsion = 23640.025162 eV Total energy + Delta-G solvation = -3855.345044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54835 -40.79138 -39.39728 -38.71502 -35.74216 -34.63768 -32.70568 -32.60313 -30.30673 -29.22251 -28.04246 -27.43099 -27.09221 -25.53885 -24.83244 -23.16910 -21.91377 -21.09622 -20.03135 -19.65444 -18.69527 -18.06948 -17.63207 -17.41749 -16.79728 -16.59618 -16.42646 -16.14509 -15.79534 -15.59777 -15.41390 -15.14980 -14.99919 -14.75077 -14.02595 -13.84050 -13.73198 -13.46499 -13.27457 -13.14776 -12.97309 -12.88429 -12.73704 -12.67522 -12.58879 -12.37793 -12.13597 -11.87785 -11.77708 -11.57008 -11.42223 -11.33322 -10.93602 -10.75745 -10.74220 -10.68291 -10.20411 -10.06093 -8.89516 -7.83521 -5.20028 -0.99418 -0.01256 0.39387 1.21979 1.44292 1.46263 1.55100 1.89687 2.07229 2.49235 2.63122 3.24903 3.35165 3.45208 3.65283 3.72673 3.79136 3.94488 4.05569 4.10185 4.23557 4.35591 4.37487 4.49182 4.53262 4.60751 4.66739 4.84480 4.87251 4.89192 4.90851 4.94154 5.01617 5.10577 5.16166 5.24167 5.34733 5.46198 5.55531 5.65398 5.72014 6.05850 6.17271 6.30424 6.44684 6.99348 7.08688 7.77725 8.41827 9.25792 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.003252 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.152760 B = 8608.730453 C = 9660.626773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.135 3.865 4 C 0.044 3.956 5 N -0.481 5.481 6 C 0.114 3.886 7 C -0.308 4.308 8 C 0.592 3.408 9 O -0.566 6.566 10 N -0.692 5.692 11 C 0.135 3.865 12 H 0.086 0.914 13 C 0.191 3.809 14 N -0.619 5.619 15 C -0.235 4.235 16 H 0.088 0.912 17 C -0.070 4.070 18 N -0.953 5.953 19 Si 0.977 3.023 20 H -0.289 1.289 21 H -0.300 1.300 22 H -0.264 1.264 23 C 0.136 3.864 24 C -0.074 4.074 25 C -0.123 4.123 26 C -0.125 4.125 27 S 0.252 5.748 28 H 0.093 0.907 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.189 0.811 34 H 0.405 0.595 35 H -0.001 1.001 36 H 0.011 0.989 37 H 0.243 0.757 38 H 0.052 0.948 39 H 0.030 0.970 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.031 0.969 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.772 16.454 -0.132 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.055 3.945 4 C -0.230 4.230 5 N -0.197 5.197 6 C -0.045 4.045 7 C -0.432 4.432 8 C 0.378 3.622 9 O -0.446 6.446 10 N -0.343 5.343 11 C 0.030 3.970 12 H 0.104 0.896 13 C 0.065 3.935 14 N -0.346 5.346 15 C -0.364 4.364 16 H 0.106 0.894 17 C -0.263 4.263 18 N -0.603 5.603 19 Si 0.806 3.194 20 H -0.216 1.216 21 H -0.227 1.227 22 H -0.188 1.188 23 C 0.012 3.988 24 C -0.076 4.076 25 C -0.181 4.181 26 C -0.183 4.183 27 S 0.509 5.491 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.206 0.794 34 H 0.242 0.758 35 H 0.018 0.982 36 H 0.029 0.971 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.473 16.076 -0.079 24.489 hybrid contribution 0.865 -1.545 -0.746 1.921 sum -17.608 14.531 -0.825 22.844 Atomic orbital electron populations 1.23022 0.77862 1.04218 1.01881 1.87938 1.22643 1.26959 1.95852 1.21115 0.82041 0.86283 1.05050 1.27627 1.02197 1.01655 0.91530 1.66233 1.04576 1.16603 1.32239 1.22263 0.91041 0.95511 0.95704 1.25774 0.98388 1.20011 0.99077 1.16997 0.86479 0.76013 0.82718 1.90815 1.45782 1.51931 1.56104 1.45731 1.09736 1.73075 1.05710 1.22229 0.82096 0.96509 0.96190 0.89596 1.21104 0.96784 0.90376 0.85251 1.44672 1.76011 1.08778 1.05097 1.19470 1.35561 0.87705 0.93623 0.89384 1.25676 1.02304 1.01899 0.96421 1.70227 1.51975 1.31182 1.06890 0.85093 0.76805 0.79585 0.77954 1.21578 1.22656 1.18817 1.21922 0.96092 0.85111 0.95713 1.22015 0.98140 0.95636 0.91812 1.21591 0.93372 1.00554 1.02561 1.21670 0.97945 0.95250 1.03437 1.83551 0.94018 1.62285 1.09234 0.88809 0.91671 0.92337 0.87226 0.88347 0.79409 0.75786 0.98248 0.97124 0.94809 0.92957 0.95216 0.91505 0.90106 0.94994 0.92193 0.89898 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.68 10.69 -148.98 -1.59 -9.27 16 3 C 0.13 1.95 6.51 71.24 0.46 2.41 16 4 C 0.04 0.96 7.01 88.46 0.62 1.58 16 5 N -0.48 -12.89 10.51 -190.29 -2.00 -14.89 16 6 C 0.11 3.30 11.09 84.23 0.93 4.24 16 7 C -0.31 -9.18 6.49 23.88 0.15 -9.03 16 8 C 0.59 21.66 7.79 86.45 0.67 22.34 16 9 O -0.57 -25.13 16.51 -4.30 -0.07 -25.20 16 10 N -0.69 -23.54 4.45 -440.89 -1.96 -25.50 16 11 C 0.14 5.22 2.59 46.18 0.12 5.34 16 12 H 0.09 3.47 7.45 -2.39 -0.02 3.45 16 13 C 0.19 9.89 4.79 86.73 0.42 10.30 16 14 N -0.62 -31.22 3.38 -691.98 -2.34 -33.56 16 15 C -0.23 -13.06 10.28 84.03 0.86 -12.19 16 16 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 17 C -0.07 -4.09 5.49 84.86 0.47 -3.63 16 18 N -0.95 -60.09 10.31 21.65 0.22 -59.87 16 19 Si 0.98 46.84 29.55 68.60 2.03 48.86 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 22 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 23 C 0.14 5.10 6.12 86.85 0.53 5.63 16 24 C -0.07 -2.30 0.83 -50.79 -0.04 -2.34 16 25 C -0.12 -3.65 8.57 71.98 0.62 -3.04 16 26 C -0.13 -2.66 8.22 71.98 0.59 -2.07 16 27 S 0.25 5.36 22.31 -56.49 -1.26 4.10 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.06 0.42 8.14 -2.38 -0.02 0.41 16 31 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.19 5.31 8.06 -2.91 -0.02 5.29 16 34 H 0.40 11.63 6.29 -92.71 -0.58 11.05 16 35 H 0.00 -0.04 7.41 -2.38 -0.02 -0.06 16 36 H 0.01 0.64 7.38 -2.39 -0.02 0.62 16 37 H 0.24 15.10 8.31 -92.71 -0.77 14.32 16 38 H 0.05 1.87 8.05 -2.38 -0.02 1.85 16 39 H 0.03 1.05 7.98 -2.39 -0.02 1.03 16 40 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.03 1.18 7.91 -2.39 -0.02 1.16 16 43 H 0.06 1.16 6.48 -2.39 -0.02 1.14 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -79.00 382.25 1.10 -77.89 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.42 Total: 16.40 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 7.66 Total: 21.04 kcal Atomic # 7 Polarization: -127.75 SS G_CDS: -6.08 Total: -133.82 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -1.66 Total: -34.48 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.86 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.26 Total: 4.10 kcal Total: -79.00 1.10 -77.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977665863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.494 kcal (2) G-P(sol) polarization free energy of solvation -78.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds