Wall clock time and date at job start Tue Mar 31 2020 22:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.50698 * 109.47306 * 179.97438 * 3 2 1 5 5 N 1.30942 * 122.90339 * 269.70861 * 4 3 2 6 6 C 1.29432 * 117.36297 * 179.74847 * 5 4 3 7 7 S 1.70952 * 110.39133 * 0.49745 * 6 5 4 8 8 C 1.35663 * 122.90403 * 89.99695 * 4 3 2 9 9 C 1.46682 * 126.13099 * 0.02562 * 8 4 3 10 10 O 1.21686 * 120.00063 * 0.02562 * 9 8 4 11 11 N 1.34773 * 120.00090 * 179.97438 * 9 8 4 12 12 C 1.47022 * 125.64823 * 0.03354 * 11 9 8 13 13 C 1.54323 * 107.27132 * 181.01964 * 12 11 9 14 14 H 1.09005 * 110.71801 * 263.82198 * 13 12 11 15 15 N 1.46506 * 110.71971 * 140.55233 * 13 12 11 16 16 C 1.36935 * 119.99817 * 86.45625 * 15 13 12 17 17 H 1.08004 * 120.00363 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99885 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47170 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47029 * 119.99955 * 20 18 16 23 23 H 1.48501 * 109.47294 * 239.99904 * 20 18 16 24 24 C 1.55157 * 102.94453 * 22.18811 * 13 12 11 25 25 C 1.53000 * 111.00279 * 82.57234 * 24 13 12 26 26 C 1.52991 * 111.00488 * 206.38763 * 24 13 12 27 27 C 1.47423 * 125.64885 * 179.71409 * 11 9 8 28 28 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 31 31 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 32 32 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 33 33 H 1.07999 * 124.80769 * 180.23344 * 6 5 4 34 34 H 1.08999 * 109.88238 * 300.43491 * 12 11 9 35 35 H 1.09001 * 109.88504 * 61.60171 * 12 11 9 36 36 H 0.97000 * 120.00041 * 266.45078 * 15 13 12 37 37 H 0.96993 * 119.99857 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.47170 * 59.99935 * 25 24 13 39 39 H 1.08996 * 109.47147 * 180.02562 * 25 24 13 40 40 H 1.09005 * 109.47295 * 300.00119 * 25 24 13 41 41 H 1.09003 * 109.47739 * 60.00247 * 26 24 13 42 42 H 1.09000 * 109.47043 * 180.02562 * 26 24 13 43 43 H 1.09007 * 109.47311 * 299.99633 * 26 24 13 44 44 H 1.09000 * 110.36941 * 274.75412 * 27 11 9 45 45 H 1.09005 * 110.36540 * 37.07716 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2216 1.1361 1.1003 6 6 5.5055 1.0288 0.9759 7 16 5.9430 0.9938 -0.6763 8 6 4.2477 1.1281 -1.1381 9 6 3.7251 1.1697 -2.5080 10 8 2.5272 1.2655 -2.6996 11 7 4.5717 1.1029 -3.5545 12 6 6.0346 0.9864 -3.4671 13 6 6.5801 0.9702 -4.9106 14 1 6.7393 -0.0530 -5.2511 15 7 7.8178 1.7482 -5.0058 16 6 9.0215 1.1563 -4.7300 17 1 9.0584 0.1161 -4.4419 18 6 10.1943 1.8934 -4.8208 19 7 10.1494 3.1609 -5.1724 20 14 11.8362 1.0862 -4.4438 21 1 11.6158 -0.3351 -4.0746 22 1 12.7094 1.1570 -5.6429 23 1 12.4885 1.7953 -3.3138 24 6 5.4424 1.6473 -5.7197 25 6 5.5435 3.1717 -5.6376 26 6 5.4505 1.1777 -7.1757 27 6 4.1836 1.1279 -4.9765 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 1.6887 1.8463 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 6.2021 0.9737 1.7993 34 1 6.4428 1.8402 -2.9262 35 1 6.3031 0.0603 -2.9589 36 1 7.7847 2.6825 -5.2643 37 1 10.9689 3.6758 -5.2361 38 1 6.5017 3.4947 -6.0445 39 1 4.7341 3.6210 -6.2129 40 1 5.4665 3.4855 -4.5965 41 1 5.3084 0.0975 -7.2100 42 1 4.6434 1.6680 -7.7201 43 1 6.4056 1.4333 -7.6347 44 1 3.9259 0.1251 -5.3172 45 1 3.3458 1.8083 -5.1292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996388069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:41 Heat of formation + Delta-G solvation = -9.051376 kcal Electronic energy + Delta-G solvation = -28149.905472 eV Core-core repulsion = 24295.356060 eV Total energy + Delta-G solvation = -3854.549412 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48872 -39.69884 -37.82816 -37.48439 -34.25342 -33.30835 -31.38514 -30.89581 -28.60565 -27.66139 -27.07082 -26.55267 -25.68046 -24.56068 -24.03434 -21.88686 -20.88684 -19.01411 -18.66270 -18.21579 -17.32541 -16.58551 -16.42600 -16.16371 -15.77366 -15.47187 -15.03216 -14.77649 -14.50454 -14.30602 -14.04807 -13.79859 -13.62325 -13.18369 -12.97852 -12.75283 -12.59541 -12.45648 -12.19895 -12.13158 -11.64614 -11.54814 -11.39127 -11.21996 -11.10456 -10.98157 -10.68557 -10.60730 -10.27449 -10.15986 -9.98389 -9.74872 -9.68286 -9.50050 -9.42488 -9.07644 -9.07298 -8.40135 -7.18060 -5.93141 -3.23989 0.22089 1.22055 1.62460 2.35083 3.04535 3.14763 3.33580 3.40431 3.42192 3.84745 4.29101 4.44123 4.54465 4.86267 4.93793 4.95512 5.04413 5.11258 5.24854 5.34189 5.41873 5.45321 5.50082 5.56433 5.59981 5.63409 5.68260 5.75131 5.87700 5.95455 5.98214 6.03426 6.09785 6.21389 6.28452 6.30703 6.47956 6.53617 6.66132 6.79122 7.09306 7.51661 7.57166 7.63919 8.16450 8.24885 9.37354 9.89901 10.25238 11.28725 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.003792 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.641042 B = 7381.663290 C = 8994.381313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.380 6.380 3 C 0.132 3.868 4 C 0.130 3.870 5 N -0.469 5.469 6 C -0.002 4.002 7 S 0.230 5.770 8 C -0.272 4.272 9 C 0.607 3.393 10 O -0.533 6.533 11 N -0.604 5.604 12 C 0.058 3.942 13 C 0.186 3.814 14 H 0.070 0.930 15 N -0.710 5.710 16 C -0.251 4.251 17 H 0.073 0.927 18 C -0.005 4.005 19 N -0.928 5.928 20 Si 0.906 3.094 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.086 4.086 25 C -0.133 4.133 26 C -0.129 4.129 27 C 0.121 3.879 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.202 0.798 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.391 0.609 37 H 0.257 0.743 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.305 -3.369 6.070 15.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.299 6.299 3 C 0.053 3.947 4 C -0.010 4.010 5 N -0.183 5.183 6 C -0.297 4.297 7 S 0.488 5.512 8 C -0.397 4.397 9 C 0.394 3.606 10 O -0.413 6.413 11 N -0.336 5.336 12 C -0.069 4.069 13 C 0.073 3.927 14 H 0.087 0.913 15 N -0.351 5.351 16 C -0.381 4.381 17 H 0.091 0.909 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.737 3.263 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.088 4.088 25 C -0.190 4.190 26 C -0.187 4.187 27 C -0.001 4.001 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.219 0.781 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.228 0.772 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.852 -3.625 6.109 14.684 hybrid contribution 0.155 0.162 0.543 0.587 sum -12.697 -3.463 6.652 14.746 Atomic orbital electron populations 1.22702 0.80755 1.02594 1.00006 1.87891 1.19735 1.26744 1.95481 1.20983 0.85437 0.85945 1.02292 1.20129 0.96916 0.98435 0.85503 1.66086 1.05259 1.15732 1.31259 1.28954 0.95380 1.02154 1.03171 1.84986 1.03916 1.62392 0.99875 1.25631 0.97313 1.17785 0.98990 1.16285 0.85276 0.77155 0.81870 1.90749 1.14139 1.51672 1.84722 1.48317 1.08139 1.71047 1.06133 1.23605 0.77883 1.01580 1.03857 1.21161 0.86585 0.95923 0.88992 0.91260 1.42564 0.99955 1.11583 1.81046 1.19296 0.84118 0.95163 1.39570 0.90879 1.24751 0.97866 0.95856 1.01763 1.69657 1.27202 1.07078 1.53535 0.86150 0.84148 0.78463 0.77584 1.20394 1.21775 1.21754 1.22041 0.94353 0.96705 0.95664 1.21655 1.02270 0.93351 1.01749 1.21646 1.02457 1.00525 0.94031 1.22397 0.97710 1.01096 0.78943 0.94271 0.89752 0.93653 0.89062 0.92093 0.78085 0.90078 0.91699 0.77202 0.93320 0.90747 0.93123 0.92832 0.92711 0.92960 0.91205 0.91228 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.73 10.69 -35.23 -0.38 -6.11 16 3 C 0.13 1.92 5.75 36.00 0.21 2.13 16 4 C 0.13 2.04 6.42 -83.89 -0.54 1.50 16 5 N -0.47 -6.96 10.50 -11.53 -0.12 -7.08 16 6 C 0.00 -0.03 12.22 51.75 0.63 0.60 16 7 S 0.23 3.11 18.70 -107.50 -2.01 1.10 16 8 C -0.27 -4.32 6.40 -37.10 -0.24 -4.56 16 9 C 0.61 10.31 7.81 -12.85 -0.10 10.21 16 10 O -0.53 -9.84 14.52 5.20 0.08 -9.76 16 11 N -0.60 -9.63 3.31 -171.92 -0.57 -10.20 16 12 C 0.06 0.96 4.62 -3.06 -0.01 0.95 16 13 C 0.19 3.27 2.85 -66.09 -0.19 3.08 16 14 H 0.07 1.23 8.02 -51.93 -0.42 0.81 16 15 N -0.71 -15.56 5.08 -51.64 -0.26 -15.82 16 16 C -0.25 -6.21 9.98 -15.06 -0.15 -6.36 16 17 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 18 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 19 N -0.93 -25.80 13.06 55.49 0.72 -25.08 16 20 Si 0.91 20.77 29.55 -169.99 -5.02 15.75 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.09 -1.28 0.87 -152.24 -0.13 -1.41 16 25 C -0.13 -2.04 7.94 37.16 0.30 -1.75 16 26 C -0.13 -1.71 8.68 37.15 0.32 -1.38 16 27 C 0.12 1.74 5.85 -2.41 -0.01 1.73 16 28 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 1.37 6.01 -51.93 -0.31 1.06 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.08 1.45 6.75 -51.93 -0.35 1.10 16 35 H 0.06 1.04 7.03 -51.93 -0.36 0.68 16 36 H 0.39 9.11 5.26 -40.82 -0.21 8.90 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 38 H 0.07 1.29 6.34 -51.93 -0.33 0.96 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.87 7.91 -51.93 -0.41 0.46 16 41 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 45 H 0.08 1.10 7.95 -51.93 -0.41 0.69 16 LS Contribution 375.14 15.07 5.65 5.65 Total: -1.00 -30.33 375.14 -7.38 -37.72 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.57 Total: 7.83 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 1.10 Total: 6.00 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.23 Total: -58.17 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.30 Total: -15.87 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -2.01 Total: 1.10 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.33 -7.38 -37.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996388069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.665 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds