Wall clock time and date at job start Tue Mar 31 2020 22:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.50698 * 109.47306 * 179.97438 * 3 2 1 5 5 N 1.30942 * 122.90339 * 269.70861 * 4 3 2 6 6 C 1.29432 * 117.36297 * 179.74847 * 5 4 3 7 7 S 1.70952 * 110.39133 * 0.49745 * 6 5 4 8 8 C 1.35663 * 122.90403 * 89.99695 * 4 3 2 9 9 C 1.46682 * 126.13099 * 0.02562 * 8 4 3 10 10 O 1.21686 * 120.00063 * 0.02562 * 9 8 4 11 11 N 1.34773 * 120.00090 * 179.97438 * 9 8 4 12 12 C 1.47022 * 125.64823 * 0.03354 * 11 9 8 13 13 C 1.54323 * 107.27132 * 181.01964 * 12 11 9 14 14 H 1.09005 * 110.71801 * 263.82198 * 13 12 11 15 15 N 1.46506 * 110.71971 * 140.55233 * 13 12 11 16 16 C 1.36935 * 119.99817 * 86.45625 * 15 13 12 17 17 H 1.08004 * 120.00363 * 359.97438 * 16 15 13 18 18 C 1.38817 * 119.99885 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99907 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47170 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47029 * 119.99955 * 20 18 16 23 23 H 1.48501 * 109.47294 * 239.99904 * 20 18 16 24 24 C 1.55157 * 102.94453 * 22.18811 * 13 12 11 25 25 C 1.53000 * 111.00279 * 82.57234 * 24 13 12 26 26 C 1.52991 * 111.00488 * 206.38763 * 24 13 12 27 27 C 1.47423 * 125.64885 * 179.71409 * 11 9 8 28 28 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 29 29 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 31 31 H 1.09000 * 109.47170 * 299.99544 * 3 2 1 32 32 H 1.09004 * 109.47235 * 59.99983 * 3 2 1 33 33 H 1.07999 * 124.80769 * 180.23344 * 6 5 4 34 34 H 1.08999 * 109.88238 * 300.43491 * 12 11 9 35 35 H 1.09001 * 109.88504 * 61.60171 * 12 11 9 36 36 H 0.97000 * 120.00041 * 266.45078 * 15 13 12 37 37 H 0.96993 * 119.99857 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.47170 * 59.99935 * 25 24 13 39 39 H 1.08996 * 109.47147 * 180.02562 * 25 24 13 40 40 H 1.09005 * 109.47295 * 300.00119 * 25 24 13 41 41 H 1.09003 * 109.47739 * 60.00247 * 26 24 13 42 42 H 1.09000 * 109.47043 * 180.02562 * 26 24 13 43 43 H 1.09007 * 109.47311 * 299.99633 * 26 24 13 44 44 H 1.09000 * 110.36941 * 274.75412 * 27 11 9 45 45 H 1.09005 * 110.36540 * 37.07716 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2216 1.1361 1.1003 6 6 5.5055 1.0288 0.9759 7 16 5.9430 0.9938 -0.6763 8 6 4.2477 1.1281 -1.1381 9 6 3.7251 1.1697 -2.5080 10 8 2.5272 1.2655 -2.6996 11 7 4.5717 1.1029 -3.5545 12 6 6.0346 0.9864 -3.4671 13 6 6.5801 0.9702 -4.9106 14 1 6.7393 -0.0530 -5.2511 15 7 7.8178 1.7482 -5.0058 16 6 9.0215 1.1563 -4.7300 17 1 9.0584 0.1161 -4.4419 18 6 10.1943 1.8934 -4.8208 19 7 10.1494 3.1609 -5.1724 20 14 11.8362 1.0862 -4.4438 21 1 11.6158 -0.3351 -4.0746 22 1 12.7094 1.1570 -5.6429 23 1 12.4885 1.7953 -3.3138 24 6 5.4424 1.6473 -5.7197 25 6 5.5435 3.1717 -5.6376 26 6 5.4505 1.1777 -7.1757 27 6 4.1836 1.1279 -4.9765 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 1.6887 1.8463 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 6.2021 0.9737 1.7993 34 1 6.4428 1.8402 -2.9262 35 1 6.3031 0.0603 -2.9589 36 1 7.7847 2.6825 -5.2643 37 1 10.9689 3.6758 -5.2361 38 1 6.5017 3.4947 -6.0445 39 1 4.7341 3.6210 -6.2129 40 1 5.4665 3.4855 -4.5965 41 1 5.3084 0.0975 -7.2100 42 1 4.6434 1.6680 -7.7201 43 1 6.4056 1.4333 -7.6347 44 1 3.9259 0.1251 -5.3172 45 1 3.3458 1.8083 -5.1292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996388069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:40 Heat of formation + Delta-G solvation = -29.432183 kcal Electronic energy + Delta-G solvation = -28150.789250 eV Core-core repulsion = 24295.356060 eV Total energy + Delta-G solvation = -3855.433190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.70654 -40.90377 -39.14322 -38.53190 -35.89340 -34.70653 -32.73418 -32.39842 -29.75444 -29.15393 -28.28931 -27.56288 -26.77466 -25.85272 -25.55956 -23.28476 -22.14975 -20.31471 -19.81152 -19.42550 -19.12216 -17.68495 -17.63289 -17.41171 -17.04292 -16.51657 -16.40874 -16.09098 -15.75828 -15.70443 -15.31828 -15.17858 -14.87491 -14.59471 -14.28453 -13.98820 -13.86919 -13.64135 -13.46689 -13.25004 -12.97572 -12.85998 -12.78778 -12.61210 -12.47747 -12.28629 -12.09791 -12.01541 -11.89023 -11.53344 -11.43983 -11.27872 -10.96884 -10.69301 -10.64197 -10.54605 -10.20161 -9.66075 -9.02587 -7.90757 -5.19805 -0.88678 0.12643 0.55296 1.23376 1.51915 1.54271 1.62314 1.79411 1.90658 2.59700 2.83197 3.20435 3.35532 3.39682 3.65543 3.76163 3.80327 3.87431 4.04165 4.14943 4.22309 4.34270 4.37048 4.40761 4.46680 4.53448 4.59806 4.64403 4.74216 4.78495 4.81457 4.85640 4.90342 5.00219 5.06628 5.10258 5.19176 5.24357 5.43416 5.51351 5.59787 6.11550 6.26675 6.31023 6.49020 6.88028 7.39597 8.10230 8.35323 9.32184 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013403 B = 0.003792 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.641042 B = 7381.663290 C = 8994.381313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.406 6.406 3 C 0.134 3.866 4 C 0.125 3.875 5 N -0.490 5.490 6 C 0.021 3.979 7 S 0.232 5.768 8 C -0.301 4.301 9 C 0.604 3.396 10 O -0.553 6.553 11 N -0.603 5.603 12 C 0.071 3.929 13 C 0.179 3.821 14 H 0.073 0.927 15 N -0.719 5.719 16 C -0.238 4.238 17 H 0.081 0.919 18 C -0.065 4.065 19 N -0.965 5.965 20 Si 0.963 3.037 21 H -0.264 1.264 22 H -0.300 1.300 23 H -0.297 1.297 24 C -0.078 4.078 25 C -0.127 4.127 26 C -0.124 4.124 27 C 0.123 3.877 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.244 0.756 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.382 0.618 37 H 0.250 0.750 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.072 -4.662 6.873 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.325 6.325 3 C 0.055 3.945 4 C -0.015 4.015 5 N -0.204 5.204 6 C -0.273 4.273 7 S 0.490 5.510 8 C -0.426 4.426 9 C 0.392 3.608 10 O -0.434 6.434 11 N -0.335 5.335 12 C -0.056 4.056 13 C 0.068 3.932 14 H 0.091 0.909 15 N -0.360 5.360 16 C -0.370 4.370 17 H 0.099 0.901 18 C -0.258 4.258 19 N -0.615 5.615 20 Si 0.793 3.207 21 H -0.188 1.188 22 H -0.227 1.227 23 H -0.224 1.224 24 C -0.079 4.079 25 C -0.184 4.184 26 C -0.182 4.182 27 C 0.001 3.999 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.260 0.740 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.218 0.782 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.655 -4.963 6.908 16.088 hybrid contribution 0.299 0.531 0.362 0.708 sum -13.356 -4.432 7.270 15.839 Atomic orbital electron populations 1.22920 0.78772 1.03952 1.00918 1.87844 1.22002 1.27018 1.95646 1.20963 0.85121 0.85985 1.02446 1.20414 0.97642 0.97696 0.85760 1.66152 1.06176 1.17168 1.30891 1.29636 0.95121 0.99037 1.03476 1.84927 1.02594 1.62495 1.00942 1.25590 0.98631 1.19786 0.98586 1.16454 0.85103 0.76765 0.82440 1.90728 1.14843 1.52702 1.85157 1.48311 1.07660 1.70861 1.06702 1.23267 0.78290 1.01314 1.02739 1.21341 0.85932 0.95777 0.90128 0.90923 1.42666 1.00726 1.11508 1.81101 1.19653 0.85056 0.95310 1.36972 0.90130 1.25418 1.00798 0.96407 1.03186 1.69797 1.27268 1.08411 1.56036 0.85233 0.80598 0.78302 0.76578 1.18801 1.22717 1.22413 1.21994 0.93322 0.96037 0.96559 1.21581 1.01855 0.94001 1.00961 1.21612 1.02235 1.01682 0.92626 1.22487 0.97309 1.02139 0.77973 0.92385 0.88226 0.93676 0.90134 0.90593 0.74035 0.91467 0.91079 0.78217 0.94124 0.93019 0.90791 0.94328 0.91284 0.90692 0.93210 0.89565 0.89972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -11.93 10.69 -148.98 -1.59 -13.52 16 3 C 0.13 3.81 5.75 71.24 0.41 4.21 16 4 C 0.13 3.83 6.42 42.09 0.27 4.10 16 5 N -0.49 -13.70 10.50 -190.40 -2.00 -15.70 16 6 C 0.02 0.46 12.22 130.60 1.60 2.06 16 7 S 0.23 5.98 18.70 -56.49 -1.06 4.93 16 8 C -0.30 -9.38 6.40 23.88 0.15 -9.23 16 9 C 0.60 20.27 7.81 86.45 0.68 20.94 16 10 O -0.55 -20.25 14.52 -4.30 -0.06 -20.31 16 11 N -0.60 -18.71 3.31 -816.05 -2.70 -21.41 16 12 C 0.07 2.30 4.62 86.73 0.40 2.70 16 13 C 0.18 6.15 2.85 46.18 0.13 6.29 16 14 H 0.07 2.46 8.02 -2.38 -0.02 2.45 16 15 N -0.72 -31.60 5.08 -317.31 -1.61 -33.21 16 16 C -0.24 -11.73 9.98 84.04 0.84 -10.89 16 17 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 18 C -0.07 -3.43 5.50 84.86 0.47 -2.96 16 19 N -0.96 -54.79 13.06 21.65 0.28 -54.51 16 20 Si 0.96 42.80 29.55 68.60 2.03 44.82 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 24 C -0.08 -2.22 0.87 -50.71 -0.04 -2.26 16 25 C -0.13 -3.85 7.94 71.98 0.57 -3.27 16 26 C -0.12 -3.05 8.68 71.98 0.62 -2.42 16 27 C 0.12 3.32 5.85 86.93 0.51 3.83 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.08 2.43 6.01 -2.39 -0.01 2.42 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.24 3.10 8.06 -2.91 -0.02 3.08 16 34 H 0.07 2.39 6.75 -2.39 -0.02 2.38 16 35 H 0.07 2.20 7.03 -2.39 -0.02 2.19 16 36 H 0.38 18.19 5.26 -92.71 -0.49 17.71 16 37 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 38 H 0.05 1.82 6.34 -2.39 -0.02 1.80 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.04 1.26 7.91 -2.38 -0.02 1.24 16 41 H 0.07 1.50 8.07 -2.39 -0.02 1.48 16 42 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.09 2.08 7.99 -2.39 -0.02 2.06 16 45 H 0.08 2.19 7.95 -2.38 -0.02 2.17 16 Total: -1.00 -65.48 375.14 1.66 -63.82 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.52 Total: 30.14 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 7.85 Total: 14.95 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -6.03 Total: -124.83 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -1.65 Total: -33.83 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -1.06 Total: 4.93 kcal Total: -65.48 1.66 -63.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996388069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.384 kcal (2) G-P(sol) polarization free energy of solvation -65.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds