Wall clock time and date at job start Tue Mar 31 2020 22:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 113.99932 * 2 1 4 4 C 1.50700 * 109.46866 * 180.02562 * 3 2 1 5 5 N 1.28652 * 124.72086 * 90.28704 * 4 3 2 6 6 C 1.33559 * 115.76912 * 180.21768 * 5 4 3 7 7 C 1.47264 * 123.14313 * 179.75680 * 6 5 4 8 8 O 1.21633 * 119.99975 * 179.70730 * 7 6 5 9 9 N 1.34777 * 119.99990 * 359.43377 * 7 6 5 10 10 C 1.47022 * 125.64657 * 0.29298 * 9 7 6 11 11 C 1.54325 * 107.26819 * 181.02607 * 10 9 7 12 12 H 1.09007 * 110.71916 * 263.82985 * 11 10 9 13 13 N 1.46495 * 110.72105 * 140.56191 * 11 10 9 14 14 C 1.36942 * 120.00590 * 86.45011 * 13 11 10 15 15 H 1.08006 * 119.99063 * 0.02562 * 14 13 11 16 16 C 1.38808 * 120.00600 * 180.02562 * 14 13 11 17 17 N 1.31619 * 119.99714 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00127 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47114 * 59.99933 * 18 16 14 20 20 H 1.48499 * 109.46973 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47155 * 299.99686 * 18 16 14 22 22 C 1.55148 * 102.94316 * 22.19597 * 11 10 9 23 23 C 1.53006 * 111.00273 * 82.57136 * 22 11 10 24 24 C 1.53004 * 111.00836 * 206.38236 * 22 11 10 25 25 C 1.47423 * 125.65040 * 179.97438 * 9 7 6 26 26 C 1.35203 * 113.71168 * 359.48716 * 6 5 4 27 27 S 1.70765 * 124.72209 * 269.97377 * 4 3 2 28 28 H 1.09003 * 109.47087 * 299.99799 * 1 2 3 29 29 H 1.09001 * 109.47489 * 59.99545 * 1 2 3 30 30 H 1.08997 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46972 * 60.00017 * 3 2 1 32 32 H 1.09001 * 109.46573 * 300.00056 * 3 2 1 33 33 H 1.08992 * 109.88825 * 300.44379 * 10 9 7 34 34 H 1.09005 * 109.88151 * 61.45865 * 10 9 7 35 35 H 0.97003 * 120.00116 * 266.45546 * 13 11 10 36 36 H 0.97006 * 120.00056 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.46893 * 60.00381 * 23 22 11 38 38 H 1.09006 * 109.46554 * 179.97438 * 23 22 11 39 39 H 1.08997 * 109.47051 * 299.99492 * 23 22 11 40 40 H 1.09002 * 109.46821 * 59.99870 * 24 22 11 41 41 H 1.08997 * 109.47695 * 179.97438 * 24 22 11 42 42 H 1.08999 * 109.46800 * 300.00514 * 24 22 11 43 43 H 1.09004 * 110.36391 * 274.74595 * 25 9 7 44 44 H 1.09006 * 110.36657 * 37.06144 * 25 9 7 45 45 H 1.08009 * 125.58380 * 180.28784 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2430 1.1341 -1.0584 6 6 5.5578 1.0242 -0.8511 7 6 6.5414 0.9460 -1.9443 8 8 7.7271 0.8521 -1.6900 9 7 6.1273 0.9728 -3.2266 10 6 4.7312 1.0830 -3.6740 11 6 4.7404 1.0480 -5.2168 12 1 4.7204 2.0583 -5.6257 13 7 3.6146 0.2597 -5.7241 14 6 2.3957 0.8529 -5.9186 15 1 2.2647 1.9021 -5.6983 16 6 1.3289 0.1060 -6.3988 17 7 1.4889 -1.1725 -6.6677 18 14 -0.3335 0.9154 -6.6646 19 1 -0.1953 2.0180 -7.6498 20 1 -1.2970 -0.0902 -7.1799 21 1 -0.8296 1.4622 -5.3761 22 6 6.0883 0.3513 -5.5406 23 6 5.9550 -1.1702 -5.4496 24 6 6.6065 0.7721 -6.9173 25 6 6.9998 0.9032 -4.4129 26 6 5.9018 0.9974 0.4561 27 16 4.4827 1.1100 1.4025 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 4.1508 0.2453 -3.2877 34 1 4.3031 2.0227 -3.3248 35 1 3.7324 -0.6825 -5.9223 36 1 0.7434 -1.6945 -7.0036 37 1 5.2048 -1.5124 -6.1624 38 1 6.9141 -1.6334 -5.6816 39 1 5.6513 -1.4486 -4.4405 40 1 6.7581 1.8514 -6.9342 41 1 7.5526 0.2696 -7.1187 42 1 5.8782 0.4955 -7.6797 43 1 7.3685 1.8959 -4.6714 44 1 7.8326 0.2235 -4.2320 45 1 6.9084 0.9181 0.8396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996715146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:51 Heat of formation + Delta-G solvation = -8.491748 kcal Electronic energy + Delta-G solvation = -28235.748195 eV Core-core repulsion = 24381.223051 eV Total energy + Delta-G solvation = -3854.525144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.58875 -39.24302 -37.97731 -37.46556 -34.06572 -33.05072 -31.63299 -30.73917 -28.24492 -27.52623 -27.05995 -26.91766 -25.98090 -24.14746 -23.75846 -21.67207 -20.56092 -19.48982 -18.66097 -18.07406 -17.16479 -16.70324 -16.17724 -16.03158 -15.79764 -15.66203 -15.18587 -14.74438 -14.24779 -14.06603 -13.92349 -13.73285 -13.37773 -13.03711 -12.79127 -12.61115 -12.39782 -12.30469 -12.22609 -11.95303 -11.84355 -11.53888 -11.48502 -11.15514 -11.00093 -10.87003 -10.53446 -10.44457 -10.21517 -10.00471 -9.89762 -9.80585 -9.73494 -9.65785 -9.58528 -9.06056 -8.90120 -8.20065 -7.00018 -5.78677 -3.07673 0.39797 1.11361 1.50112 1.96635 3.26368 3.41085 3.43280 3.46307 3.47060 3.64398 4.17563 4.56557 4.68739 4.82259 5.00406 5.08068 5.16786 5.18911 5.23638 5.25341 5.31848 5.42020 5.57310 5.63832 5.66879 5.74211 5.87861 5.88879 5.92320 6.05069 6.09651 6.22141 6.34508 6.42650 6.47901 6.67102 6.70942 6.74563 6.82374 6.93015 7.06690 7.43249 7.68526 7.83350 8.34259 8.40153 9.51489 10.07068 10.42448 11.43763 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.008091 B = 0.005226 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3459.670890 B = 5356.975297 C = 8312.242288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.140 3.860 4 C 0.021 3.979 5 N -0.406 5.406 6 C 0.019 3.981 7 C 0.602 3.398 8 O -0.552 6.552 9 N -0.591 5.591 10 C 0.090 3.910 11 C 0.177 3.823 12 H 0.063 0.937 13 N -0.710 5.710 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.009 4.009 17 N -0.931 5.931 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.086 4.086 23 C -0.132 4.132 24 C -0.128 4.128 25 C 0.118 3.882 26 C -0.226 4.226 27 S 0.217 5.783 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.389 0.611 36 H 0.256 0.744 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 5.139 14.575 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C 0.060 3.940 4 C -0.259 4.259 5 N -0.123 5.123 6 C -0.116 4.116 7 C 0.387 3.613 8 O -0.432 6.432 9 N -0.322 5.322 10 C -0.035 4.035 11 C 0.064 3.936 12 H 0.081 0.919 13 N -0.352 5.352 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.088 4.088 23 C -0.189 4.189 24 C -0.186 4.186 25 C -0.005 4.005 26 C -0.368 4.368 27 S 0.473 5.527 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.226 0.774 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 4.759 5.042 15.242 16.745 hybrid contribution -0.580 0.250 -0.839 1.050 sum 4.180 5.293 14.403 15.904 Atomic orbital electron populations 1.22807 0.79848 1.03429 1.00313 1.87960 1.20427 1.25970 1.95503 1.20771 0.84178 0.86424 1.02591 1.26720 1.00911 1.06601 0.91629 1.67178 1.02982 1.11723 1.30367 1.20406 0.90056 1.07838 0.93344 1.16685 0.86252 0.77389 0.80944 1.90772 1.16196 1.52735 1.83497 1.48305 1.10509 1.69293 1.04076 1.23359 0.79624 1.02474 0.98070 1.21296 0.87027 0.95180 0.90068 0.91911 1.42497 1.06241 1.10150 1.76328 1.19188 0.87343 0.94098 1.36529 0.91243 1.24708 0.98068 0.95737 1.02010 1.69644 1.31335 1.06067 1.50857 0.86298 0.84143 0.78061 0.77820 1.21295 1.21751 1.21359 1.22027 0.96070 0.96606 0.94094 1.21640 1.01248 0.93489 1.02520 1.21644 1.00566 1.00560 0.95814 1.22411 0.93447 1.00687 0.83964 1.26620 1.05953 1.07391 0.96845 1.82665 0.94896 1.63509 1.11598 0.94029 0.93108 0.89115 0.91048 0.89487 0.89981 0.91981 0.77355 0.93429 0.90854 0.93346 0.92777 0.92852 0.93130 0.91298 0.91450 0.90743 0.79341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.30 10.69 -35.23 -0.38 -5.68 16 3 C 0.14 1.68 6.51 36.01 0.23 1.92 16 4 C 0.02 0.29 6.97 -13.61 -0.09 0.19 16 5 N -0.41 -6.78 7.65 -8.51 -0.07 -6.84 16 6 C 0.02 0.32 6.62 -84.53 -0.56 -0.24 16 7 C 0.60 11.04 7.83 -12.59 -0.10 10.94 16 8 O -0.55 -10.90 16.97 5.25 0.09 -10.82 16 9 N -0.59 -10.61 3.31 -171.69 -0.57 -11.18 16 10 C 0.09 1.74 4.89 -3.06 -0.01 1.73 16 11 C 0.18 3.48 2.84 -66.10 -0.19 3.29 16 12 H 0.06 1.24 8.02 -51.93 -0.42 0.83 16 13 N -0.71 -17.06 5.08 -51.65 -0.26 -17.33 16 14 C -0.24 -6.41 9.98 -15.06 -0.15 -6.56 16 15 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 18 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.09 -1.44 0.87 -152.23 -0.13 -1.57 16 23 C -0.13 -2.27 7.94 37.16 0.30 -1.98 16 24 C -0.13 -1.88 8.68 37.16 0.32 -1.56 16 25 C 0.12 1.89 5.85 -2.41 -0.01 1.88 16 26 C -0.23 -2.95 10.62 29.65 0.31 -2.63 16 27 S 0.22 2.26 22.92 -107.50 -2.46 -0.20 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.81 7.40 -51.93 -0.38 1.43 16 34 H 0.06 1.21 7.63 -51.93 -0.40 0.82 16 35 H 0.39 9.91 5.26 -40.82 -0.21 9.70 16 36 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.07 1.40 6.34 -51.93 -0.33 1.07 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 1.01 7.91 -51.93 -0.41 0.60 16 40 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.00 7.99 -51.93 -0.41 0.58 16 44 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 45 H 0.19 2.15 8.03 -52.48 -0.42 1.72 16 LS Contribution 382.55 15.07 5.76 5.76 Total: -1.00 -32.32 382.55 -8.00 -40.32 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.75 Total: 9.31 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 0.93 Total: 6.50 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.17 Total: -61.95 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.29 Total: -16.49 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.46 Total: -0.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.32 -8.00 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996715146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.829 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds