Wall clock time and date at job start Tue Mar 31 2020 22:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99958 * 2 1 4 4 C 1.50699 * 109.46996 * 179.97438 * 3 2 1 5 5 N 1.29434 * 124.79973 * 89.97292 * 4 3 2 6 6 C 1.30947 * 117.35702 * 180.02562 * 5 4 3 7 7 C 1.35654 * 114.19727 * 0.02562 * 6 5 4 8 8 C 1.46680 * 126.13454 * 179.97438 * 7 6 5 9 9 O 1.21683 * 119.99730 * 5.44763 * 8 7 6 10 10 N 1.34774 * 120.00116 * 185.44112 * 8 7 6 11 11 C 1.47429 * 125.64584 * 175.09570 * 10 8 7 12 12 C 1.54917 * 104.83229 * 204.16790 * 11 10 8 13 13 H 1.08995 * 111.00218 * 204.87917 * 12 11 10 14 14 N 1.46494 * 111.00169 * 81.06300 * 12 11 10 15 15 C 1.36933 * 120.00040 * 86.45957 * 14 12 11 16 16 H 1.08009 * 120.00050 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00234 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99738 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00200 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.46981 * 89.99725 * 19 17 15 21 21 H 1.48500 * 109.47315 * 209.99974 * 19 17 15 22 22 H 1.48499 * 109.46943 * 330.00154 * 19 17 15 23 23 C 1.55407 * 101.66335 * 323.07671 * 12 11 10 24 24 C 1.53002 * 110.69484 * 277.04881 * 23 12 11 25 25 C 1.52997 * 110.85380 * 153.69795 * 23 12 11 26 26 C 1.47015 * 125.65118 * 355.14328 * 10 8 7 27 27 S 1.70956 * 124.80622 * 270.33084 * 4 3 2 28 28 H 1.08995 * 109.47151 * 300.00262 * 1 2 3 29 29 H 1.09008 * 109.46574 * 59.99849 * 1 2 3 30 30 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47081 * 59.99986 * 3 2 1 32 32 H 1.09004 * 109.47031 * 300.00089 * 3 2 1 33 33 H 1.08007 * 122.89798 * 180.02562 * 6 5 4 34 34 H 1.09000 * 110.36865 * 323.00285 * 11 10 8 35 35 H 1.08996 * 110.36777 * 85.33257 * 11 10 8 36 36 H 0.97001 * 120.00254 * 266.44864 * 14 12 11 37 37 H 0.97011 * 119.99575 * 179.97438 * 18 17 15 38 38 H 1.08991 * 109.47217 * 174.82742 * 24 23 12 39 39 H 1.09003 * 109.46685 * 294.82431 * 24 23 12 40 40 H 1.08996 * 109.47117 * 54.82490 * 24 23 12 41 41 H 1.08996 * 109.47039 * 305.08808 * 25 23 12 42 42 H 1.09011 * 109.46852 * 65.08458 * 25 23 12 43 43 H 1.08994 * 109.47691 * 185.08121 * 25 23 12 44 44 H 1.09007 * 109.88229 * 298.32019 * 26 10 8 45 45 H 1.09001 * 109.88695 * 59.32488 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2494 1.1274 -1.0619 6 6 5.5436 1.0245 -0.8917 7 6 5.9329 0.9934 0.4074 8 6 7.3120 0.8832 0.8947 9 8 8.2394 0.9093 0.1073 10 7 7.5520 0.7530 2.2145 11 6 8.8733 0.5311 2.8297 12 6 8.5691 -0.1495 4.1877 13 1 9.3735 0.0267 4.9018 14 7 8.3299 -1.5843 4.0139 15 6 9.3834 -2.4590 4.0134 16 1 10.3909 -2.0910 4.1407 17 6 9.1567 -3.8186 3.8493 18 7 10.1695 -4.6593 3.8483 19 14 7.4143 -4.4552 3.6298 20 1 7.0735 -4.4766 2.1846 21 1 7.3165 -5.8303 4.1818 22 1 6.4678 -3.5648 4.3484 23 6 7.2675 0.5809 4.6207 24 6 7.5946 1.9164 5.2918 25 6 6.4303 -0.3021 5.5482 26 6 6.5395 0.8078 3.2790 27 16 4.4841 1.1016 1.4047 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.2409 0.9691 -1.7147 34 1 9.4779 -0.1250 2.2036 35 1 9.3827 1.4817 2.9876 36 1 7.4251 -1.9148 3.8994 37 1 10.0110 -5.6095 3.7339 38 1 6.6697 2.4525 5.5041 39 1 8.1304 1.7332 6.2233 40 1 8.2169 2.5146 4.6263 41 1 6.2367 -1.2584 5.0624 42 1 6.9739 -0.4703 6.4780 43 1 5.4841 0.1934 5.7652 44 1 6.0556 1.7846 3.2805 45 1 5.7957 0.0262 3.1239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996734400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:46 Heat of formation + Delta-G solvation = -6.572259 kcal Electronic energy + Delta-G solvation = -27940.925957 eV Core-core repulsion = 24086.484048 eV Total energy + Delta-G solvation = -3854.441909 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.38957 -39.81623 -38.25744 -37.78297 -34.18213 -33.28701 -31.84507 -31.11549 -29.29815 -28.13577 -26.99427 -26.63546 -26.21159 -24.39611 -23.59629 -21.95715 -20.83388 -19.33870 -18.87237 -18.52152 -17.65634 -16.99037 -16.68012 -16.17850 -15.92817 -15.84959 -15.21304 -14.87576 -14.51838 -14.38691 -14.24798 -13.96717 -13.68156 -13.15229 -13.05426 -12.85404 -12.75549 -12.53621 -12.42477 -12.23066 -11.86485 -11.86189 -11.73081 -11.67056 -11.36006 -11.05113 -10.84263 -10.68130 -10.33005 -10.25363 -10.12503 -9.98056 -9.70577 -9.61887 -9.60088 -9.22182 -9.07741 -8.42866 -7.35939 -5.83733 -3.20665 0.03949 0.98971 1.41496 2.28515 3.01191 3.22623 3.29491 3.35568 3.38349 3.41723 4.00039 4.44532 4.50807 4.52571 4.53001 4.84375 4.86061 4.91193 4.93346 4.97145 5.01733 5.15807 5.24408 5.29181 5.37814 5.38987 5.43943 5.59505 5.72814 5.74272 5.92092 5.99237 6.01636 6.04282 6.10614 6.17812 6.35969 6.48571 6.56751 6.59936 6.64814 7.41671 7.61399 7.90170 8.19100 8.34842 9.11229 9.83669 10.01291 11.34075 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.003960 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.687461 B = 7069.426795 C = 7705.777825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.140 3.860 4 C 0.022 3.978 5 N -0.460 5.460 6 C 0.111 3.889 7 C -0.274 4.274 8 C 0.605 3.395 9 O -0.526 6.526 10 N -0.597 5.597 11 C 0.081 3.919 12 C 0.183 3.817 13 H 0.084 0.916 14 N -0.734 5.734 15 C -0.249 4.249 16 H 0.093 0.907 17 C 0.012 3.988 18 N -0.928 5.928 19 Si 0.877 3.123 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.276 1.276 23 C -0.084 4.084 24 C -0.133 4.133 25 C -0.132 4.132 26 C 0.096 3.904 27 S 0.210 5.790 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.190 0.810 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.363 0.637 37 H 0.261 0.739 38 H 0.056 0.944 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.631 16.894 -0.818 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C 0.060 3.940 4 C -0.252 4.252 5 N -0.176 5.176 6 C -0.047 4.047 7 C -0.398 4.398 8 C 0.391 3.609 9 O -0.404 6.404 10 N -0.330 5.330 11 C -0.043 4.043 12 C 0.072 3.928 13 H 0.102 0.898 14 N -0.376 5.376 15 C -0.379 4.379 16 H 0.111 0.889 17 C -0.184 4.184 18 N -0.575 5.575 19 Si 0.707 3.293 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.085 4.085 24 C -0.191 4.191 25 C -0.190 4.190 26 C -0.028 4.028 27 S 0.468 5.532 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.207 0.793 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.197 0.803 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.345 16.624 -0.708 24.767 hybrid contribution -0.923 -0.551 -1.113 1.547 sum -19.268 16.073 -1.821 25.158 Atomic orbital electron populations 1.22818 0.79924 1.03447 1.00294 1.87997 1.20362 1.26139 1.95504 1.20795 0.84552 0.86189 1.02479 1.27154 1.00783 1.03987 0.93281 1.66184 1.04816 1.14911 1.31661 1.22144 0.90634 0.96385 0.95569 1.25971 0.98251 1.17659 0.97923 1.16254 0.85841 0.77524 0.81265 1.90843 1.43807 1.51364 1.54381 1.48179 1.10561 1.70030 1.04198 1.23365 0.83465 0.99867 0.97618 1.21431 0.94191 0.84386 0.92837 0.89839 1.42730 1.06202 1.00957 1.87750 1.19032 0.88492 0.87483 1.42886 0.88885 1.24632 0.96448 0.95864 1.01485 1.69692 1.29054 1.02513 1.56220 0.86687 0.85939 0.78479 0.78150 1.21043 1.21505 1.20278 1.21914 0.97034 0.96705 0.92860 1.21771 1.01485 0.95104 1.00691 1.21720 0.98439 0.99265 0.99572 1.22309 0.91440 1.01020 0.88030 1.84159 0.95980 1.63590 1.09511 0.93629 0.93592 0.89039 0.90763 0.89988 0.79300 0.89185 0.91962 0.80282 0.92925 0.92540 0.91680 0.92335 0.91794 0.91423 0.93059 0.91213 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.08 10.69 -35.23 -0.38 -4.45 16 3 C 0.14 1.26 6.51 36.01 0.23 1.50 16 4 C 0.02 0.27 7.01 -13.29 -0.09 0.18 16 5 N -0.46 -6.53 10.51 -11.50 -0.12 -6.65 16 6 C 0.11 1.63 11.09 -18.85 -0.21 1.42 16 7 C -0.27 -4.17 6.40 -37.10 -0.24 -4.41 16 8 C 0.60 10.85 7.81 -12.85 -0.10 10.75 16 9 O -0.53 -11.05 17.17 5.20 0.09 -10.96 16 10 N -0.60 -9.94 3.33 -172.05 -0.57 -10.51 16 11 C 0.08 1.43 6.27 -2.52 -0.02 1.41 16 12 C 0.18 3.19 2.94 -65.64 -0.19 2.99 16 13 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 14 N -0.73 -16.25 4.53 -51.22 -0.23 -16.48 16 15 C -0.25 -6.73 10.47 -15.06 -0.16 -6.89 16 16 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 17 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 18 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 19 Si 0.88 21.95 27.74 -169.99 -4.71 17.24 16 20 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 22 H -0.28 -6.33 6.52 56.52 0.37 -5.97 16 23 C -0.08 -1.11 0.81 -152.54 -0.12 -1.24 16 24 C -0.13 -1.37 8.44 37.16 0.31 -1.06 16 25 C -0.13 -1.75 8.17 37.16 0.30 -1.45 16 26 C 0.10 1.31 4.37 -3.07 -0.01 1.29 16 27 S 0.21 2.48 18.68 -107.50 -2.01 0.48 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.05 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.19 2.59 8.06 -52.48 -0.42 2.17 16 34 H 0.09 1.90 8.09 -51.93 -0.42 1.48 16 35 H 0.06 0.95 7.73 -51.93 -0.40 0.55 16 36 H 0.36 8.05 3.87 -40.82 -0.16 7.89 16 37 H 0.26 7.74 8.31 -40.81 -0.34 7.40 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.60 7.46 -51.93 -0.39 0.22 16 41 H 0.06 1.01 6.21 -51.93 -0.32 0.69 16 42 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.78 6.91 -51.93 -0.36 0.42 16 45 H 0.07 0.98 6.36 -51.93 -0.33 0.65 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -34.43 376.50 -7.38 -41.81 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.61 Total: 5.78 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 0.72 Total: 6.06 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.15 Total: -61.63 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.29 Total: -15.41 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -2.01 Total: 0.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.43 -7.38 -41.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996734400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.234 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds