Wall clock time and date at job start Tue Mar 31 2020 22:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99958 * 2 1 4 4 C 1.50699 * 109.46996 * 179.97438 * 3 2 1 5 5 N 1.29434 * 124.79973 * 89.97292 * 4 3 2 6 6 C 1.30947 * 117.35702 * 180.02562 * 5 4 3 7 7 C 1.35654 * 114.19727 * 0.02562 * 6 5 4 8 8 C 1.46680 * 126.13454 * 179.97438 * 7 6 5 9 9 O 1.21683 * 119.99730 * 5.44763 * 8 7 6 10 10 N 1.34774 * 120.00116 * 185.44112 * 8 7 6 11 11 C 1.47429 * 125.64584 * 175.09570 * 10 8 7 12 12 C 1.54917 * 104.83229 * 204.16790 * 11 10 8 13 13 H 1.08995 * 111.00218 * 204.87917 * 12 11 10 14 14 N 1.46494 * 111.00169 * 81.06300 * 12 11 10 15 15 C 1.36933 * 120.00040 * 86.45957 * 14 12 11 16 16 H 1.08009 * 120.00050 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00234 * 179.97438 * 15 14 12 18 18 N 1.31622 * 119.99738 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00200 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.46981 * 89.99725 * 19 17 15 21 21 H 1.48500 * 109.47315 * 209.99974 * 19 17 15 22 22 H 1.48499 * 109.46943 * 330.00154 * 19 17 15 23 23 C 1.55407 * 101.66335 * 323.07671 * 12 11 10 24 24 C 1.53002 * 110.69484 * 277.04881 * 23 12 11 25 25 C 1.52997 * 110.85380 * 153.69795 * 23 12 11 26 26 C 1.47015 * 125.65118 * 355.14328 * 10 8 7 27 27 S 1.70956 * 124.80622 * 270.33084 * 4 3 2 28 28 H 1.08995 * 109.47151 * 300.00262 * 1 2 3 29 29 H 1.09008 * 109.46574 * 59.99849 * 1 2 3 30 30 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47081 * 59.99986 * 3 2 1 32 32 H 1.09004 * 109.47031 * 300.00089 * 3 2 1 33 33 H 1.08007 * 122.89798 * 180.02562 * 6 5 4 34 34 H 1.09000 * 110.36865 * 323.00285 * 11 10 8 35 35 H 1.08996 * 110.36777 * 85.33257 * 11 10 8 36 36 H 0.97001 * 120.00254 * 266.44864 * 14 12 11 37 37 H 0.97011 * 119.99575 * 179.97438 * 18 17 15 38 38 H 1.08991 * 109.47217 * 174.82742 * 24 23 12 39 39 H 1.09003 * 109.46685 * 294.82431 * 24 23 12 40 40 H 1.08996 * 109.47117 * 54.82490 * 24 23 12 41 41 H 1.08996 * 109.47039 * 305.08808 * 25 23 12 42 42 H 1.09011 * 109.46852 * 65.08458 * 25 23 12 43 43 H 1.08994 * 109.47691 * 185.08121 * 25 23 12 44 44 H 1.09007 * 109.88229 * 298.32019 * 26 10 8 45 45 H 1.09001 * 109.88695 * 59.32488 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 0.0006 5 7 4.2494 1.1274 -1.0619 6 6 5.5436 1.0245 -0.8917 7 6 5.9329 0.9934 0.4074 8 6 7.3120 0.8832 0.8947 9 8 8.2394 0.9093 0.1073 10 7 7.5520 0.7530 2.2145 11 6 8.8733 0.5311 2.8297 12 6 8.5691 -0.1495 4.1877 13 1 9.3735 0.0267 4.9018 14 7 8.3299 -1.5843 4.0139 15 6 9.3834 -2.4590 4.0134 16 1 10.3909 -2.0910 4.1407 17 6 9.1567 -3.8186 3.8493 18 7 10.1695 -4.6593 3.8483 19 14 7.4143 -4.4552 3.6298 20 1 7.0735 -4.4766 2.1846 21 1 7.3165 -5.8303 4.1818 22 1 6.4678 -3.5648 4.3484 23 6 7.2675 0.5809 4.6207 24 6 7.5946 1.9164 5.2918 25 6 6.4303 -0.3021 5.5482 26 6 6.5395 0.8078 3.2790 27 16 4.4841 1.1016 1.4047 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 6.2409 0.9691 -1.7147 34 1 9.4779 -0.1250 2.2036 35 1 9.3827 1.4817 2.9876 36 1 7.4251 -1.9148 3.8994 37 1 10.0110 -5.6095 3.7339 38 1 6.6697 2.4525 5.5041 39 1 8.1304 1.7332 6.2233 40 1 8.2169 2.5146 4.6263 41 1 6.2367 -1.2584 5.0624 42 1 6.9739 -0.4703 6.4780 43 1 5.4841 0.1934 5.7652 44 1 6.0556 1.7846 3.2805 45 1 5.7957 0.0262 3.1239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996734400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:45 Heat of formation + Delta-G solvation = -32.185994 kcal Electronic energy + Delta-G solvation = -27942.036652 eV Core-core repulsion = 24086.484048 eV Total energy + Delta-G solvation = -3855.552604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64054 -40.90286 -39.34955 -38.71842 -35.96249 -34.64404 -33.16595 -32.70206 -30.51670 -29.22609 -28.05263 -27.56050 -27.05320 -25.76321 -24.90002 -23.40717 -22.08756 -20.66364 -20.19828 -19.61386 -19.33294 -17.86595 -17.66126 -17.39408 -17.13634 -16.60951 -16.55126 -16.20344 -16.04075 -15.50282 -15.42360 -15.14307 -14.98645 -14.64817 -14.35959 -14.00045 -13.77724 -13.74778 -13.53628 -13.26805 -13.18440 -12.94393 -12.83784 -12.76771 -12.71265 -12.39349 -12.21017 -12.06291 -11.97406 -11.63331 -11.42935 -11.33070 -11.06024 -10.85600 -10.72701 -10.62711 -10.26722 -9.79613 -9.29626 -8.05513 -5.38229 -1.00461 -0.00523 0.40140 1.18550 1.28144 1.34423 1.39966 1.73280 1.98182 2.43133 2.62313 3.17818 3.24328 3.29696 3.41398 3.51745 3.76522 3.83315 3.91524 4.08402 4.20950 4.22323 4.32833 4.35705 4.39404 4.51828 4.52654 4.59134 4.69271 4.81323 4.86006 4.89223 4.90838 4.93573 5.04979 5.11821 5.21004 5.25844 5.42302 5.54451 5.75421 6.04615 6.18704 6.27067 6.44644 6.84042 7.04494 7.79825 7.96815 9.15921 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010776 B = 0.003960 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.687461 B = 7069.426795 C = 7705.777825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.135 3.865 4 C 0.024 3.976 5 N -0.484 5.484 6 C 0.111 3.889 7 C -0.311 4.311 8 C 0.599 3.401 9 O -0.574 6.574 10 N -0.599 5.599 11 C 0.087 3.913 12 C 0.172 3.828 13 H 0.085 0.915 14 N -0.736 5.736 15 C -0.224 4.224 16 H 0.063 0.937 17 C -0.058 4.058 18 N -0.981 5.981 19 Si 0.937 3.063 20 H -0.296 1.296 21 H -0.292 1.292 22 H -0.239 1.239 23 C -0.069 4.069 24 C -0.129 4.129 25 C -0.132 4.132 26 C 0.090 3.910 27 S 0.276 5.724 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.185 0.815 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.365 0.635 37 H 0.256 0.744 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.105 0.895 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.903 19.389 0.904 30.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.056 3.944 4 C -0.250 4.250 5 N -0.200 5.200 6 C -0.049 4.049 7 C -0.435 4.435 8 C 0.387 3.613 9 O -0.456 6.456 10 N -0.330 5.330 11 C -0.038 4.038 12 C 0.062 3.938 13 H 0.103 0.897 14 N -0.379 5.379 15 C -0.355 4.355 16 H 0.081 0.919 17 C -0.250 4.250 18 N -0.631 5.631 19 Si 0.765 3.235 20 H -0.223 1.223 21 H -0.219 1.219 22 H -0.163 1.163 23 C -0.071 4.071 24 C -0.186 4.186 25 C -0.190 4.190 26 C -0.033 4.033 27 S 0.535 5.465 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.112 0.888 33 H 0.202 0.798 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.200 0.800 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.682 19.192 1.072 29.731 hybrid contribution 0.388 -1.221 -1.654 2.092 sum -22.294 17.971 -0.582 28.641 Atomic orbital electron populations 1.23022 0.77890 1.04201 1.01880 1.87936 1.22623 1.26999 1.95845 1.21091 0.82259 0.86219 1.04877 1.27887 1.02465 1.01468 0.93136 1.66265 1.04477 1.16508 1.32779 1.22202 0.91195 0.95812 0.95647 1.25750 0.98410 1.20220 0.99143 1.16655 0.86649 0.76766 0.81246 1.90801 1.45602 1.53589 1.55560 1.48255 1.10843 1.69376 1.04572 1.23157 0.83992 1.00090 0.96577 1.21707 0.97217 0.82133 0.92750 0.89706 1.42696 1.04927 1.02508 1.87755 1.19020 0.88666 0.88129 1.39730 0.91924 1.25368 1.00366 0.96365 1.02877 1.69864 1.31495 1.02578 1.59212 0.85692 0.82075 0.78224 0.77503 1.22317 1.21895 1.16336 1.21903 0.94184 0.97840 0.93140 1.21784 1.03206 0.93121 1.00525 1.21737 1.00204 0.98191 0.98857 1.22601 0.90791 1.02975 0.86905 1.83690 0.92959 1.62134 1.07735 0.91545 0.92479 0.88821 0.87169 0.88791 0.79782 0.93947 0.89488 0.80001 0.93463 0.89427 0.91079 0.92325 0.94486 0.91592 0.89217 0.87692 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.59 10.69 -148.98 -1.59 -9.18 16 3 C 0.13 1.94 6.51 71.24 0.46 2.40 16 4 C 0.02 0.52 7.01 88.46 0.62 1.14 16 5 N -0.48 -13.14 10.51 -190.30 -2.00 -15.14 16 6 C 0.11 3.25 11.09 84.23 0.93 4.19 16 7 C -0.31 -9.22 6.40 23.88 0.15 -9.07 16 8 C 0.60 21.66 7.81 86.45 0.68 22.34 16 9 O -0.57 -25.28 17.17 -4.29 -0.07 -25.35 16 10 N -0.60 -19.42 3.33 -816.48 -2.72 -22.14 16 11 C 0.09 3.06 6.27 86.86 0.54 3.61 16 12 C 0.17 5.82 2.94 46.48 0.14 5.96 16 13 H 0.09 2.87 8.03 -2.39 -0.02 2.85 16 14 N -0.74 -32.46 4.53 -315.96 -1.43 -33.89 16 15 C -0.22 -12.47 10.47 84.03 0.88 -11.59 16 16 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 17 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 18 N -0.98 -63.34 13.97 21.65 0.30 -63.04 16 19 Si 0.94 45.82 27.74 68.60 1.90 47.73 16 20 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 21 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 22 H -0.24 -10.10 6.52 99.48 0.65 -9.45 16 23 C -0.07 -1.61 0.81 -50.90 -0.04 -1.65 16 24 C -0.13 -2.07 8.44 71.98 0.61 -1.46 16 25 C -0.13 -2.96 8.17 71.98 0.59 -2.38 16 26 C 0.09 2.15 4.37 86.73 0.38 2.53 16 27 S 0.28 5.61 18.68 -56.49 -1.06 4.56 16 28 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.19 5.32 8.06 -2.91 -0.02 5.30 16 34 H 0.04 1.89 8.09 -2.39 -0.02 1.87 16 35 H 0.09 2.61 7.73 -2.39 -0.02 2.59 16 36 H 0.37 15.73 3.87 -92.71 -0.36 15.37 16 37 H 0.26 15.89 8.31 -92.70 -0.77 15.12 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 0.97 7.46 -2.39 -0.02 0.95 16 41 H 0.04 1.03 6.21 -2.39 -0.01 1.02 16 42 H 0.07 1.51 8.14 -2.38 -0.02 1.50 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.11 1.80 6.91 -2.38 -0.02 1.78 16 45 H 0.07 1.69 6.36 -2.39 -0.02 1.67 16 Total: -1.00 -80.31 376.50 1.58 -78.73 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.59 Total: 23.18 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 7.66 Total: 14.54 kcal Atomic # 7 Polarization: -128.36 SS G_CDS: -5.84 Total: -134.20 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.67 Total: -34.53 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.90 Total: 47.73 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.06 Total: 4.56 kcal Total: -80.31 1.58 -78.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996734400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.545 kcal (2) G-P(sol) polarization free energy of solvation -80.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds