Wall clock time and date at job start Tue Mar 31 2020 22:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29027 * 124.91445 * 2 1 4 4 C 1.31785 * 117.12433 * 179.97438 * 3 2 1 5 5 C 1.50697 * 122.74748 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47123 * 90.03048 * 5 4 3 7 7 O 1.21274 * 119.99860 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99975 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00113 * 359.97438 * 8 6 5 10 10 C 1.46497 * 120.00226 * 179.97438 * 8 6 5 11 11 H 1.09005 * 110.64035 * 3.14285 * 10 8 6 12 12 C 1.54324 * 110.72331 * 126.47595 * 10 8 6 13 13 N 1.47015 * 107.27320 * 140.55814 * 12 10 8 14 14 C 1.36932 * 125.65158 * 181.02293 * 13 12 10 15 15 H 1.08004 * 120.00054 * 0.02562 * 14 13 12 16 16 C 1.38820 * 120.00246 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99746 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99910 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47370 * 59.99985 * 18 16 14 20 20 H 1.48497 * 109.46818 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46961 * 300.00071 * 18 16 14 22 22 C 1.47428 * 108.70264 * 1.06081 * 13 12 10 23 23 C 1.54904 * 104.83239 * 335.87277 * 22 13 12 24 24 H 1.09005 * 111.00765 * 278.93271 * 23 22 13 25 25 O 1.42899 * 111.00547 * 155.08205 * 23 22 13 26 26 C 1.33639 * 114.49868 * 0.02562 * 4 3 2 27 27 C 1.50697 * 126.03807 * 179.97438 * 26 4 3 28 28 S 1.70977 * 124.91658 * 179.68981 * 2 1 3 29 29 H 1.09001 * 109.46953 * 90.00061 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99658 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00289 * 1 2 3 32 32 H 1.09005 * 109.46794 * 210.02660 * 5 4 3 33 33 H 1.08993 * 109.47499 * 330.02485 * 5 4 3 34 34 H 1.08996 * 109.47278 * 89.99663 * 9 8 6 35 35 H 1.09002 * 109.47188 * 210.00543 * 9 8 6 36 36 H 1.09005 * 109.46912 * 329.99547 * 9 8 6 37 37 H 1.09003 * 109.88214 * 259.97917 * 12 10 8 38 38 H 1.08996 * 109.87871 * 21.13942 * 12 10 8 39 39 H 0.97004 * 119.99658 * 180.02562 * 17 16 14 40 40 H 1.09003 * 110.36677 * 217.03261 * 22 13 12 41 41 H 1.09004 * 110.45872 * 94.75388 * 22 13 12 42 42 H 0.96707 * 114.00154 * 67.80354 * 25 23 22 43 43 H 1.09007 * 109.47306 * 89.99311 * 27 26 4 44 44 H 1.08993 * 109.47296 * 209.99347 * 27 26 4 45 45 H 1.09003 * 109.46900 * 329.99775 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 0.0000 6 6 4.8573 2.4069 1.4207 7 8 4.3448 1.8086 2.3427 8 7 5.7189 3.4137 1.6665 9 6 6.3385 4.1361 0.5526 10 6 6.0361 3.7857 3.0475 11 1 5.5371 3.1177 3.7496 12 6 7.5622 3.7839 3.2768 13 7 7.8762 4.9365 4.1337 14 6 9.1273 5.3010 4.5543 15 1 9.9879 4.7211 4.2549 16 6 9.2896 6.4158 5.3654 17 7 8.2408 7.1221 5.7307 18 14 10.9965 6.9133 5.9385 19 1 11.8507 7.2010 4.7583 20 1 10.8991 8.1278 6.7875 21 1 11.5965 5.8064 6.7258 22 6 6.6208 5.6344 4.4661 23 6 5.6452 5.2619 3.3220 24 1 5.8191 5.8821 2.4426 25 8 4.2869 5.3600 3.7549 26 6 3.9355 -0.4006 0.0004 27 6 5.3575 -0.8994 0.0004 28 16 2.4857 -1.4020 0.0076 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 5.4432 1.7221 -0.5138 33 1 4.0905 2.8790 -0.5141 34 1 5.7115 4.9835 0.2756 35 1 7.3222 4.4953 0.8549 36 1 6.4428 3.4667 -0.3013 37 1 7.8614 2.8606 3.7729 38 1 8.0804 3.8792 2.3227 39 1 8.3543 7.9013 6.2972 40 1 6.7814 6.7122 4.4919 41 1 6.2333 5.2862 5.4235 42 1 3.9969 6.2641 3.9387 43 1 5.7004 -1.0196 1.0281 44 1 5.4058 -1.8594 -0.5133 45 1 5.9949 -0.1798 -0.5134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047429307.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:19 Heat of formation + Delta-G solvation = -4.137810 kcal Electronic energy + Delta-G solvation = -27684.509181 eV Core-core repulsion = 23830.172838 eV Total energy + Delta-G solvation = -3854.336344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.51078 -39.42479 -37.69359 -35.17952 -34.71888 -33.99979 -32.01093 -30.65360 -30.03828 -28.41784 -27.22627 -26.57667 -25.30585 -24.32842 -23.05549 -20.68081 -20.46397 -19.08026 -18.68702 -17.97996 -17.40493 -17.08759 -16.42896 -15.81618 -15.51528 -15.03021 -14.87702 -14.67709 -13.95387 -13.87600 -13.63984 -13.55720 -13.42025 -13.17245 -13.05030 -12.94321 -12.77561 -12.41118 -12.33678 -12.23542 -12.17753 -11.87885 -11.68092 -11.47676 -11.24063 -11.20197 -10.94820 -10.83452 -10.22519 -9.94052 -9.73664 -9.70444 -9.68962 -9.30536 -9.22152 -8.73716 -8.66026 -8.31105 -6.95003 -5.73736 -3.17477 0.59996 1.20909 1.59123 2.59066 2.82958 3.26208 3.36043 3.40571 3.41844 3.93139 4.40231 4.60947 4.66128 4.80659 4.82202 4.86806 5.04202 5.10465 5.20190 5.22013 5.31014 5.33824 5.39757 5.41914 5.51850 5.60144 5.64568 5.66774 5.70686 5.78677 5.84459 5.91655 6.05961 6.12566 6.19554 6.47041 6.61078 6.93450 7.34369 7.49470 7.61072 7.68397 7.71790 8.17192 8.27798 8.39898 9.10934 9.71623 10.34343 11.29714 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.024393 B = 0.002512 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.597124 B =11144.822931 C =11707.078144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.045 3.955 3 N -0.458 5.458 4 C 0.085 3.915 5 C -0.065 4.065 6 C 0.521 3.479 7 O -0.530 6.530 8 N -0.602 5.602 9 C 0.069 3.931 10 C 0.137 3.863 11 H 0.110 0.890 12 C 0.130 3.870 13 N -0.599 5.599 14 C -0.226 4.226 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.918 3.082 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.285 1.285 22 C 0.129 3.871 23 C 0.065 3.935 24 H 0.059 0.941 25 O -0.563 6.563 26 C -0.209 4.209 27 C -0.076 4.076 28 S 0.108 5.892 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.031 0.969 38 H 0.034 0.966 39 H 0.254 0.746 40 H 0.111 0.889 41 H 0.024 0.976 42 H 0.374 0.626 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.750 -12.881 -16.635 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.234 4.234 3 N -0.172 5.172 4 C -0.046 4.046 5 C -0.107 4.107 6 C 0.307 3.693 7 O -0.406 6.406 8 N -0.335 5.335 9 C -0.074 4.074 10 C 0.034 3.966 11 H 0.128 0.872 12 C 0.004 3.996 13 N -0.326 5.326 14 C -0.354 4.354 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.748 3.252 19 H -0.211 1.211 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.003 3.997 23 C 0.004 3.996 24 H 0.077 0.923 25 O -0.367 6.367 26 C -0.329 4.329 27 C -0.135 4.135 28 S 0.363 5.637 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.129 0.871 41 H 0.042 0.958 42 H 0.220 0.780 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.395 -14.260 -16.077 24.325 hybrid contribution 1.459 1.678 0.434 2.266 sum -9.936 -12.582 -15.643 22.400 Atomic orbital electron populations 1.20418 0.85239 1.04261 1.03626 1.26807 1.01535 0.90720 1.04319 1.65991 1.04365 1.31671 1.15164 1.19314 0.89752 0.92803 1.02749 1.20221 0.97724 0.96789 0.96013 1.20229 0.78651 0.79729 0.90657 1.90702 1.51057 1.52685 1.46106 1.47749 1.44481 1.34082 1.07144 1.21875 0.99738 0.96906 0.88840 1.22124 0.96321 0.96148 0.82033 0.87190 1.21550 0.90926 0.92177 0.94990 1.44263 1.03388 1.27576 1.57412 1.19034 0.83052 1.08235 1.25060 0.90251 1.24816 0.97767 0.98039 0.99863 1.69751 1.27233 1.19804 1.40250 0.86104 0.83000 0.77773 0.78319 1.21067 1.21511 1.21112 1.22554 0.83371 1.01508 0.92261 1.23717 0.82315 0.95479 0.98086 0.92331 1.86469 1.27836 1.32553 1.89823 1.25569 1.00276 0.95544 1.11558 1.20272 0.88562 1.01304 1.03384 1.83752 0.97689 1.12722 1.69571 0.89749 0.90224 0.89224 0.87415 0.87289 0.92551 0.89671 0.91273 0.95118 0.94784 0.93506 0.87127 0.95783 0.78013 0.90118 0.91096 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.46 36.01 0.38 -0.22 16 2 C 0.04 0.53 7.39 -13.45 -0.10 0.43 16 3 N -0.46 -6.71 10.53 -8.05 -0.08 -6.80 16 4 C 0.09 1.18 5.23 -84.23 -0.44 0.74 16 5 C -0.06 -0.80 4.43 -29.04 -0.13 -0.93 16 6 C 0.52 8.64 7.67 -10.99 -0.08 8.55 16 7 O -0.53 -11.10 15.41 5.56 0.09 -11.02 16 8 N -0.60 -9.68 2.89 -171.84 -0.50 -10.18 16 9 C 0.07 0.83 9.10 59.85 0.54 1.38 16 10 C 0.14 2.71 3.10 -66.10 -0.20 2.50 16 11 H 0.11 2.48 7.00 -51.93 -0.36 2.12 16 12 C 0.13 2.73 6.80 -3.07 -0.02 2.71 16 13 N -0.60 -15.11 3.39 -170.07 -0.58 -15.68 16 14 C -0.23 -6.14 10.27 -15.06 -0.15 -6.29 16 15 H 0.08 2.07 7.83 -52.48 -0.41 1.65 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -26.29 10.09 55.49 0.56 -25.73 16 18 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.13 3.13 5.62 -2.53 -0.01 3.12 16 23 C 0.06 1.30 4.00 -24.59 -0.10 1.20 16 24 H 0.06 1.11 7.29 -51.93 -0.38 0.73 16 25 O -0.56 -10.97 13.47 -35.23 -0.47 -11.45 16 26 C -0.21 -2.52 6.59 -35.92 -0.24 -2.76 16 27 C -0.08 -0.71 10.10 36.00 0.36 -0.34 16 28 S 0.11 1.13 23.18 -107.50 -2.49 -1.36 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.97 5.97 -51.93 -0.31 0.66 16 33 H 0.11 1.22 8.11 -51.93 -0.42 0.80 16 34 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.08 1.10 6.08 -51.93 -0.32 0.79 16 36 H 0.07 0.59 6.44 -51.93 -0.33 0.26 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.66 5.93 -51.93 -0.31 0.35 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.11 2.93 5.88 -51.93 -0.31 2.62 16 41 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.37 5.66 9.12 45.56 0.42 6.07 16 43 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.61 6.76 -51.93 -0.35 0.26 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -35.66 375.88 -8.73 -44.39 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.60 Total: 5.85 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.29 Total: 9.74 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.60 Total: -58.39 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.39 Total: -22.46 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.49 Total: -1.36 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.66 -8.73 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047429307.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.253 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds