Wall clock time and date at job start Tue Mar 31 2020 22:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29025 * 124.92017 * 2 1 4 4 C 1.31777 * 117.12360 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.74669 * 179.97438 * 4 3 2 6 6 C 1.33636 * 114.50417 * 0.23579 * 4 3 2 7 7 C 1.50694 * 126.03989 * 179.76523 * 6 4 3 8 8 C 1.50698 * 109.47290 * 90.00163 * 7 6 4 9 9 O 1.21288 * 119.99809 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00660 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00476 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.45716 * 35.00255 * 11 10 8 13 13 C 1.53040 * 109.46218 * 275.02824 * 11 10 8 14 14 C 1.53192 * 109.31151 * 178.61203 * 13 11 10 15 15 N 1.46923 * 108.77705 * 54.63984 * 14 13 11 16 16 C 1.36934 * 120.63329 * 126.36644 * 15 14 13 17 17 H 1.07998 * 119.99935 * 331.82619 * 16 15 14 18 18 C 1.38814 * 119.99818 * 151.83433 * 16 15 14 19 19 N 1.31619 * 120.00167 * 343.08145 * 18 16 15 20 20 Si 1.86796 * 119.99973 * 163.08557 * 18 16 15 21 21 H 1.48501 * 109.47452 * 89.99718 * 20 18 16 22 22 H 1.48497 * 109.47203 * 209.99549 * 20 18 16 23 23 H 1.48497 * 109.47134 * 329.99449 * 20 18 16 24 24 C 1.46933 * 118.73573 * 306.39040 * 15 14 13 25 25 C 1.53039 * 109.45957 * 154.97218 * 11 10 8 26 26 H 1.08996 * 109.49950 * 301.33987 * 25 11 10 27 27 O 1.42900 * 109.49846 * 61.43935 * 25 11 10 28 28 S 1.70980 * 124.91128 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47239 * 89.97208 * 1 2 3 30 30 H 1.08997 * 109.47314 * 209.97732 * 1 2 3 31 31 H 1.09004 * 109.46589 * 329.96979 * 1 2 3 32 32 H 1.08998 * 109.47273 * 90.02510 * 5 4 3 33 33 H 1.09004 * 109.47115 * 330.02491 * 5 4 3 34 34 H 1.09004 * 109.47004 * 210.02669 * 5 4 3 35 35 H 1.09002 * 109.47277 * 210.00032 * 7 6 4 36 36 H 1.09004 * 109.47550 * 330.00055 * 7 6 4 37 37 H 0.97004 * 119.99594 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.49803 * 298.56622 * 13 11 10 39 39 H 1.09006 * 109.49668 * 58.66112 * 13 11 10 40 40 H 1.09004 * 109.58483 * 174.42303 * 14 13 11 41 41 H 1.09000 * 109.58858 * 294.84900 * 14 13 11 42 42 H 0.97001 * 120.00050 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.58824 * 173.39624 * 24 15 14 44 44 H 1.09000 * 109.58271 * 293.82042 * 24 15 14 45 45 H 0.96701 * 114.00294 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8792 0.0005 5 6 4.5308 2.0244 0.0000 6 6 3.9354 -0.4008 -0.0040 7 6 5.3574 -0.8996 -0.0096 8 6 5.8357 -1.0697 1.4093 9 8 5.0949 -0.8108 2.3341 10 7 7.0869 -1.5085 1.6508 11 6 7.5520 -1.6733 3.0301 12 1 6.7241 -2.0087 3.6548 13 6 8.0769 -0.3348 3.5546 14 6 8.5301 -0.5029 5.0083 15 7 9.5037 -1.6011 5.0761 16 6 10.7327 -1.4096 5.6488 17 1 11.1843 -0.4286 5.6428 18 6 11.3982 -2.4764 6.2370 19 7 10.7395 -3.5733 6.5458 20 14 13.2284 -2.3553 6.5903 21 1 13.4341 -1.7986 7.9515 22 1 13.8384 -3.7069 6.5110 23 1 13.8679 -1.4642 5.5892 24 6 9.1338 -2.9087 4.5172 25 6 8.6740 -2.7134 3.0690 26 1 8.3063 -3.6602 2.6735 27 8 9.7730 -2.2593 2.2766 28 16 2.4856 -1.4021 -0.0006 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 4.7670 2.3009 1.0275 33 1 4.0907 2.8788 -0.5142 34 1 5.4433 1.7218 -0.5138 35 1 5.4041 -1.8583 -0.5261 36 1 5.9934 -0.1787 -0.5234 37 1 7.6795 -1.7152 0.9112 38 1 8.9208 -0.0111 2.9455 39 1 7.2840 0.4116 3.5047 40 1 8.9954 0.4198 5.3550 41 1 7.6695 -0.7383 5.6345 42 1 11.2045 -4.3187 6.9572 43 1 9.9974 -3.5734 4.5399 44 1 8.3225 -3.3402 5.1034 45 1 10.5218 -2.8708 2.2554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090447414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:03 Heat of formation + Delta-G solvation = -26.248156 kcal Electronic energy + Delta-G solvation = -27472.147696 eV Core-core repulsion = 23616.852576 eV Total energy + Delta-G solvation = -3855.295120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.32165 -39.55073 -37.94327 -34.81899 -34.35857 -33.96031 -32.17273 -30.99289 -29.45242 -29.21798 -29.01960 -26.01819 -24.74104 -22.90952 -22.43638 -21.87199 -20.34527 -19.53671 -18.82409 -18.09405 -17.40722 -16.88694 -16.18693 -15.53374 -15.31604 -15.22120 -15.03198 -14.60965 -14.02182 -13.87833 -13.74411 -13.64514 -13.48208 -13.39472 -13.23186 -12.92225 -12.72239 -12.51138 -12.17749 -12.11024 -12.05561 -11.96769 -11.29280 -11.23590 -11.16240 -10.80628 -10.62380 -10.49441 -10.21131 -10.07987 -9.87015 -9.76666 -9.66896 -9.32321 -9.19949 -8.72718 -8.65936 -8.51921 -6.69970 -5.83958 -3.24798 0.55202 1.20376 1.60884 2.63361 2.73161 3.33521 3.39464 3.41878 3.44517 3.90352 4.45844 4.48779 4.75480 4.75926 4.82619 4.96048 5.09004 5.14556 5.17258 5.25085 5.29140 5.38789 5.44102 5.51223 5.54859 5.55780 5.67754 5.80627 5.92872 6.01436 6.16453 6.19225 6.25918 6.44365 6.53832 6.77501 6.83402 6.96136 7.14439 7.39976 7.62968 7.70177 7.76227 8.20551 8.37545 8.40619 9.15585 9.78673 10.35769 11.24957 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.002336 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.512841 B =11983.531197 C =12106.645160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.043 3.957 3 N -0.471 5.471 4 C 0.077 3.923 5 C -0.079 4.079 6 C -0.203 4.203 7 C -0.064 4.064 8 C 0.509 3.491 9 O -0.532 6.532 10 N -0.718 5.718 11 C 0.163 3.837 12 H 0.089 0.911 13 C -0.135 4.135 14 C 0.148 3.852 15 N -0.583 5.583 16 C -0.242 4.242 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.907 5.907 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.146 3.854 25 C 0.073 3.927 26 H 0.043 0.957 27 O -0.560 6.560 28 S 0.127 5.873 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.402 0.598 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.019 0.981 42 H 0.254 0.746 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.603 2.811 -17.792 23.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.235 4.235 3 N -0.186 5.186 4 C -0.054 4.054 5 C -0.138 4.138 6 C -0.325 4.325 7 C -0.107 4.107 8 C 0.293 3.707 9 O -0.409 6.409 10 N -0.368 5.368 11 C 0.060 3.940 12 H 0.107 0.893 13 C -0.175 4.175 14 C 0.021 3.979 15 N -0.305 5.305 16 C -0.372 4.372 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.553 5.553 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.018 3.982 25 C 0.012 3.988 26 H 0.061 0.939 27 O -0.365 6.365 28 S 0.383 5.617 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.121 0.879 36 H 0.131 0.869 37 H 0.236 0.764 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.045 0.955 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -15.969 2.790 -17.105 23.566 hybrid contribution 2.177 -0.028 0.063 2.178 sum -13.792 2.762 -17.042 22.097 Atomic orbital electron populations 1.20423 0.85253 1.04242 1.03678 1.26875 1.01594 0.91155 1.03865 1.66111 1.04424 1.31684 1.16411 1.20058 0.90182 0.93941 1.01252 1.20375 0.95577 0.94554 1.03326 1.24908 0.98432 0.95708 1.13405 1.20062 0.90705 1.03742 0.96168 1.20377 0.82088 0.77525 0.90679 1.90731 1.55035 1.49478 1.45628 1.46192 1.13556 1.67193 1.09908 1.21002 0.95024 0.96533 0.81487 0.89290 1.22290 1.00071 0.95569 0.99610 1.20896 0.92374 0.92505 0.92140 1.43872 1.13360 1.06774 1.66476 1.19163 0.92818 0.95847 1.29387 0.91712 1.25032 0.98731 0.97785 0.98371 1.70016 1.34337 1.06124 1.44777 0.86293 0.85430 0.76813 0.78236 1.21427 1.21642 1.20482 1.21437 1.00159 0.89277 0.87296 1.22832 0.86558 0.93934 0.95469 0.93942 1.86340 1.28173 1.50733 1.71257 1.83823 0.97405 1.12153 1.68333 0.89717 0.90133 0.89319 0.90289 0.90708 0.90873 0.87860 0.86868 0.76412 0.91201 0.92961 0.92451 0.96303 0.93639 0.88647 0.95489 0.77816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.46 36.01 0.38 -0.17 16 2 C 0.04 0.48 7.39 -13.45 -0.10 0.38 16 3 N -0.47 -6.31 10.53 -8.06 -0.08 -6.39 16 4 C 0.08 1.00 6.74 -84.23 -0.57 0.43 16 5 C -0.08 -0.84 10.07 36.01 0.36 -0.48 16 6 C -0.20 -2.46 5.08 -35.92 -0.18 -2.65 16 7 C -0.06 -0.66 5.92 -29.04 -0.17 -0.83 16 8 C 0.51 7.20 7.79 -10.99 -0.09 7.12 16 9 O -0.53 -9.80 15.70 5.55 0.09 -9.71 16 10 N -0.72 -9.96 5.05 -53.77 -0.27 -10.23 16 11 C 0.16 2.83 2.20 -67.89 -0.15 2.68 16 12 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 13 C -0.14 -2.52 5.51 -26.61 -0.15 -2.67 16 14 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 15 N -0.58 -14.23 2.93 -172.31 -0.51 -14.73 16 16 C -0.24 -6.50 9.58 -15.06 -0.14 -6.65 16 17 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 18 C 0.00 -0.04 4.92 -17.43 -0.09 -0.12 16 19 N -0.91 -25.52 11.20 55.49 0.62 -24.90 16 20 Si 0.90 21.19 29.59 -169.99 -5.03 16.17 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.15 3.26 4.95 -3.71 -0.02 3.24 16 25 C 0.07 1.29 3.38 -26.61 -0.09 1.20 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 O -0.56 -9.47 12.08 -35.23 -0.43 -9.90 16 28 S 0.13 1.38 23.18 -107.50 -2.49 -1.11 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.62 6.71 -51.93 -0.35 0.27 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.11 0.89 6.76 -51.93 -0.35 0.54 16 37 H 0.40 4.68 8.26 -40.82 -0.34 4.35 16 38 H 0.07 1.36 7.61 -51.93 -0.40 0.97 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.10 2.34 6.06 -51.93 -0.31 2.03 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.38 5.51 9.08 45.56 0.41 5.92 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -33.44 379.67 -9.32 -42.76 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -5.91 Total: 7.66 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.03 Total: 4.66 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.24 Total: -56.25 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.34 Total: -19.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.49 Total: -1.11 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.44 -9.32 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090447414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.514 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds