Wall clock time and date at job start Tue Mar 31 2020 22:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29025 * 124.92017 * 2 1 4 4 C 1.31777 * 117.12360 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.74669 * 179.97438 * 4 3 2 6 6 C 1.33636 * 114.50417 * 0.23579 * 4 3 2 7 7 C 1.50694 * 126.03989 * 179.76523 * 6 4 3 8 8 C 1.50698 * 109.47290 * 90.00163 * 7 6 4 9 9 O 1.21288 * 119.99809 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00660 * 180.02562 * 8 7 6 11 11 C 1.46494 * 120.00476 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.45716 * 35.00255 * 11 10 8 13 13 C 1.53040 * 109.46218 * 275.02824 * 11 10 8 14 14 C 1.53192 * 109.31151 * 178.61203 * 13 11 10 15 15 N 1.46923 * 108.77705 * 54.63984 * 14 13 11 16 16 C 1.36934 * 120.63329 * 126.36644 * 15 14 13 17 17 H 1.07998 * 119.99935 * 331.82619 * 16 15 14 18 18 C 1.38814 * 119.99818 * 151.83433 * 16 15 14 19 19 N 1.31619 * 120.00167 * 343.08145 * 18 16 15 20 20 Si 1.86796 * 119.99973 * 163.08557 * 18 16 15 21 21 H 1.48501 * 109.47452 * 89.99718 * 20 18 16 22 22 H 1.48497 * 109.47203 * 209.99549 * 20 18 16 23 23 H 1.48497 * 109.47134 * 329.99449 * 20 18 16 24 24 C 1.46933 * 118.73573 * 306.39040 * 15 14 13 25 25 C 1.53039 * 109.45957 * 154.97218 * 11 10 8 26 26 H 1.08996 * 109.49950 * 301.33987 * 25 11 10 27 27 O 1.42900 * 109.49846 * 61.43935 * 25 11 10 28 28 S 1.70980 * 124.91128 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47239 * 89.97208 * 1 2 3 30 30 H 1.08997 * 109.47314 * 209.97732 * 1 2 3 31 31 H 1.09004 * 109.46589 * 329.96979 * 1 2 3 32 32 H 1.08998 * 109.47273 * 90.02510 * 5 4 3 33 33 H 1.09004 * 109.47115 * 330.02491 * 5 4 3 34 34 H 1.09004 * 109.47004 * 210.02669 * 5 4 3 35 35 H 1.09002 * 109.47277 * 210.00032 * 7 6 4 36 36 H 1.09004 * 109.47550 * 330.00055 * 7 6 4 37 37 H 0.97004 * 119.99594 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.49803 * 298.56622 * 13 11 10 39 39 H 1.09006 * 109.49668 * 58.66112 * 13 11 10 40 40 H 1.09004 * 109.58483 * 174.42303 * 14 13 11 41 41 H 1.09000 * 109.58858 * 294.84900 * 14 13 11 42 42 H 0.97001 * 120.00050 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.58824 * 173.39624 * 24 15 14 44 44 H 1.09000 * 109.58271 * 293.82042 * 24 15 14 45 45 H 0.96701 * 114.00294 * 180.02562 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8792 0.0005 5 6 4.5308 2.0244 0.0000 6 6 3.9354 -0.4008 -0.0040 7 6 5.3574 -0.8996 -0.0096 8 6 5.8357 -1.0697 1.4093 9 8 5.0949 -0.8108 2.3341 10 7 7.0869 -1.5085 1.6508 11 6 7.5520 -1.6733 3.0301 12 1 6.7241 -2.0087 3.6548 13 6 8.0769 -0.3348 3.5546 14 6 8.5301 -0.5029 5.0083 15 7 9.5037 -1.6011 5.0761 16 6 10.7327 -1.4096 5.6488 17 1 11.1843 -0.4286 5.6428 18 6 11.3982 -2.4764 6.2370 19 7 10.7395 -3.5733 6.5458 20 14 13.2284 -2.3553 6.5903 21 1 13.4341 -1.7986 7.9515 22 1 13.8384 -3.7069 6.5110 23 1 13.8679 -1.4642 5.5892 24 6 9.1338 -2.9087 4.5172 25 6 8.6740 -2.7134 3.0690 26 1 8.3063 -3.6602 2.6735 27 8 9.7730 -2.2593 2.2766 28 16 2.4856 -1.4021 -0.0006 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5143 32 1 4.7670 2.3009 1.0275 33 1 4.0907 2.8788 -0.5142 34 1 5.4433 1.7218 -0.5138 35 1 5.4041 -1.8583 -0.5261 36 1 5.9934 -0.1787 -0.5234 37 1 7.6795 -1.7152 0.9112 38 1 8.9208 -0.0111 2.9455 39 1 7.2840 0.4116 3.5047 40 1 8.9954 0.4198 5.3550 41 1 7.6695 -0.7383 5.6345 42 1 11.2045 -4.3187 6.9572 43 1 9.9974 -3.5734 4.5399 44 1 8.3225 -3.3402 5.1034 45 1 10.5218 -2.8708 2.2554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090447414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:02 Heat of formation + Delta-G solvation = -51.184450 kcal Electronic energy + Delta-G solvation = -27473.229015 eV Core-core repulsion = 23616.852576 eV Total energy + Delta-G solvation = -3856.376439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34363 -40.67453 -39.39664 -36.48303 -35.71116 -34.83076 -33.89954 -32.02754 -30.95659 -30.59789 -30.03656 -27.35579 -26.19054 -24.10268 -23.70162 -23.47214 -21.54265 -21.05664 -19.79946 -19.12325 -18.92576 -18.06249 -17.54842 -17.09527 -16.79040 -16.29612 -16.09706 -15.79266 -15.59644 -15.38357 -15.14873 -14.90708 -14.50972 -14.45061 -14.20897 -14.12298 -13.78321 -13.65598 -13.57261 -13.25586 -13.06861 -12.90506 -12.81774 -12.72585 -12.61431 -12.39660 -12.24330 -12.06419 -12.01249 -11.83027 -11.45157 -11.00429 -10.73027 -10.62487 -10.59050 -10.18905 -10.00003 -9.50781 -8.67690 -7.88115 -5.32484 -0.29803 0.39873 0.76436 1.47671 1.49948 1.59708 1.63844 1.73755 2.26564 2.51704 3.16674 3.25091 3.40519 3.60771 3.65803 3.86339 3.99917 4.00919 4.07306 4.08721 4.35111 4.40505 4.42672 4.50220 4.55440 4.59973 4.65285 4.73309 4.76032 4.81639 4.89543 4.95768 4.98040 5.06364 5.09139 5.18051 5.36087 5.43045 5.52066 5.55909 5.64987 6.36935 6.61734 6.78357 6.92869 7.14544 7.29095 7.82128 8.35400 9.18394 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.029084 B = 0.002336 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.512841 B =11983.531197 C =12106.645160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.037 3.963 3 N -0.504 5.504 4 C 0.058 3.942 5 C -0.078 4.078 6 C -0.220 4.220 7 C -0.055 4.055 8 C 0.510 3.490 9 O -0.578 6.578 10 N -0.705 5.705 11 C 0.170 3.830 12 H 0.069 0.931 13 C -0.117 4.117 14 C 0.144 3.856 15 N -0.598 5.598 16 C -0.254 4.254 17 H 0.061 0.939 18 C -0.048 4.048 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.271 1.271 24 C 0.149 3.851 25 C 0.093 3.907 26 H 0.070 0.930 27 O -0.559 6.559 28 S 0.137 5.863 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.417 0.583 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.007 0.993 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.001 0.999 45 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.445 2.717 -20.168 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.240 4.240 3 N -0.220 5.220 4 C -0.074 4.074 5 C -0.137 4.137 6 C -0.342 4.342 7 C -0.097 4.097 8 C 0.297 3.703 9 O -0.457 6.457 10 N -0.357 5.357 11 C 0.065 3.935 12 H 0.087 0.913 13 C -0.157 4.157 14 C 0.017 3.983 15 N -0.321 5.321 16 C -0.384 4.384 17 H 0.079 0.921 18 C -0.243 4.243 19 N -0.583 5.583 20 Si 0.796 3.204 21 H -0.218 1.218 22 H -0.216 1.216 23 H -0.196 1.196 24 C 0.022 3.978 25 C 0.031 3.969 26 H 0.088 0.912 27 O -0.366 6.366 28 S 0.394 5.606 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.254 0.746 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.025 0.975 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.019 0.981 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -15.802 2.697 -19.534 25.270 hybrid contribution 2.037 0.022 0.851 2.207 sum -13.765 2.719 -18.684 23.366 Atomic orbital electron populations 1.20611 0.82835 1.05029 1.05224 1.27560 1.03175 0.90899 1.02372 1.66167 1.05030 1.32812 1.17978 1.20448 0.90525 0.94946 1.01478 1.20419 0.96222 0.94376 1.02684 1.25176 0.99558 0.95772 1.13658 1.20127 0.89975 1.06168 0.93450 1.21046 0.81311 0.76018 0.91943 1.90723 1.56180 1.51340 1.47506 1.45937 1.13979 1.67048 1.08704 1.20635 0.94192 0.95405 0.83257 0.91341 1.22045 0.99862 0.96553 0.97277 1.20971 0.91452 0.91673 0.94155 1.44096 1.13283 1.07832 1.66854 1.19409 0.93820 0.95830 1.29356 0.92096 1.25722 1.02438 0.97547 0.98567 1.70163 1.35675 1.06671 1.45744 0.85282 0.80701 0.76658 0.77779 1.21754 1.21606 1.19564 1.21337 0.98355 0.87985 0.90083 1.22468 0.86829 0.95275 0.92291 0.91248 1.86312 1.28481 1.51385 1.70409 1.83705 0.97107 1.11853 1.67982 0.87674 0.88469 0.89346 0.91819 0.90206 0.88630 0.84839 0.83958 0.74589 0.91417 0.92644 0.92699 0.97510 0.93995 0.90882 0.98088 0.76457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.46 71.24 0.75 -0.24 16 2 C 0.04 0.80 7.39 88.52 0.65 1.45 16 3 N -0.50 -13.17 10.53 -179.40 -1.89 -15.06 16 4 C 0.06 1.43 6.74 41.52 0.28 1.71 16 5 C -0.08 -1.56 10.07 71.24 0.72 -0.85 16 6 C -0.22 -4.95 5.08 24.64 0.13 -4.82 16 7 C -0.06 -0.96 5.92 29.10 0.17 -0.79 16 8 C 0.51 13.39 7.79 87.66 0.68 14.07 16 9 O -0.58 -20.90 15.70 -3.05 -0.05 -20.95 16 10 N -0.71 -17.83 5.05 -442.42 -2.23 -20.06 16 11 C 0.17 5.71 2.20 45.02 0.10 5.81 16 12 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 13 C -0.12 -4.30 5.51 30.67 0.17 -4.13 16 14 C 0.14 6.31 6.52 86.36 0.56 6.87 16 15 N -0.60 -29.58 2.93 -699.08 -2.05 -31.63 16 16 C -0.25 -13.73 9.58 84.03 0.81 -12.92 16 17 H 0.06 3.28 7.88 -2.91 -0.02 3.26 16 18 C -0.05 -2.58 4.92 84.86 0.42 -2.16 16 19 N -0.94 -53.52 11.20 21.65 0.24 -53.28 16 20 Si 0.97 43.71 29.59 68.60 2.03 45.74 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 C 0.15 6.77 4.95 86.36 0.43 7.20 16 25 C 0.09 3.14 3.38 30.67 0.10 3.24 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 O -0.56 -17.63 12.08 -148.98 -1.80 -19.43 16 28 S 0.14 2.79 23.18 -56.49 -1.31 1.48 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 34 H 0.10 1.40 6.71 -2.38 -0.02 1.38 16 35 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.14 1.65 6.76 -2.39 -0.02 1.63 16 37 H 0.42 8.19 8.26 -92.71 -0.77 7.43 16 38 H 0.07 2.53 7.61 -2.39 -0.02 2.52 16 39 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.05 2.38 7.93 -2.38 -0.02 2.36 16 41 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 42 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 43 H 0.07 3.64 6.06 -2.39 -0.01 3.63 16 44 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 45 H 0.39 10.49 9.08 -74.06 -0.67 9.81 16 Total: -1.00 -73.63 379.67 -1.51 -75.14 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: -0.41 Total: 23.62 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.96 Total: 14.43 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -5.93 Total: -120.03 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -1.85 Total: -40.38 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.31 Total: 1.48 kcal Total: -73.63 -1.51 -75.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090447414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.955 kcal (2) G-P(sol) polarization free energy of solvation -73.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds