Wall clock time and date at job start Tue Mar 31 2020 22:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.33639 * 122.75363 * 2 1 4 4 S 1.76195 * 107.92838 * 180.02562 * 3 2 1 5 5 C 1.70972 * 90.28258 * 359.97438 * 4 3 2 6 6 C 1.50697 * 124.91882 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47228 * 270.03092 * 6 5 4 8 8 C 1.50706 * 109.47113 * 180.02562 * 7 6 5 9 9 O 1.21277 * 119.99870 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99938 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99593 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.45015 * 35.03822 * 11 10 8 13 13 C 1.53037 * 109.46081 * 275.06406 * 11 10 8 14 14 C 1.52764 * 109.38332 * 301.22247 * 13 11 10 15 15 N 1.46920 * 109.01317 * 305.58780 * 14 13 11 16 16 C 1.36933 * 120.63252 * 233.58698 * 15 14 13 17 17 H 1.08003 * 119.99875 * 29.28272 * 16 15 14 18 18 C 1.38812 * 119.99972 * 209.28349 * 16 15 14 19 19 N 1.31618 * 120.00159 * 198.89571 * 18 16 15 20 20 Si 1.86806 * 119.99971 * 18.88916 * 18 16 15 21 21 H 1.48498 * 109.47196 * 273.07231 * 20 18 16 22 22 H 1.48501 * 109.47021 * 33.07448 * 20 18 16 23 23 H 1.48503 * 109.46892 * 153.07286 * 20 18 16 24 24 C 1.46931 * 118.73600 * 53.30852 * 15 14 13 25 25 C 1.53042 * 109.45342 * 155.00056 * 11 10 8 26 26 H 1.09007 * 109.52074 * 178.62218 * 25 11 10 27 27 O 1.42903 * 109.49916 * 298.70076 * 25 11 10 28 28 N 1.29030 * 110.16519 * 0.24443 * 5 4 3 29 29 H 1.09003 * 109.47118 * 89.97337 * 1 2 3 30 30 H 1.09000 * 109.47750 * 209.97489 * 1 2 3 31 31 H 1.09003 * 109.47070 * 329.97663 * 1 2 3 32 32 H 1.08002 * 126.03276 * 0.04292 * 3 2 1 33 33 H 1.08994 * 109.47403 * 150.02586 * 6 5 4 34 34 H 1.09006 * 109.46741 * 30.02671 * 6 5 4 35 35 H 1.08994 * 109.47341 * 59.99456 * 7 6 5 36 36 H 1.09006 * 109.46916 * 299.99473 * 7 6 5 37 37 H 0.96999 * 120.00174 * 359.97438 * 10 8 7 38 38 H 1.09005 * 109.49829 * 61.29688 * 13 11 10 39 39 H 1.09000 * 109.49789 * 181.36740 * 13 11 10 40 40 H 1.09001 * 109.50684 * 185.70225 * 14 13 11 41 41 H 1.09004 * 109.43286 * 65.42528 * 14 13 11 42 42 H 0.96996 * 120.00345 * 180.02562 * 19 18 16 43 43 H 1.08996 * 109.58611 * 66.43519 * 24 15 14 44 44 H 1.08998 * 109.58480 * 186.85958 * 24 15 14 45 45 H 0.96697 * 114.00117 * 179.84266 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2299 1.1239 0.0000 4 16 3.9332 0.6731 -0.0007 5 6 3.5039 -0.9819 -0.0002 6 6 4.4834 -2.1271 -0.0010 7 6 4.8141 -2.5143 -1.4438 8 6 5.7932 -3.6601 -1.4446 9 8 6.1879 -4.1211 -0.3946 10 7 6.2301 -4.1723 -2.6122 11 6 7.1823 -5.2857 -2.6128 12 1 6.9704 -5.9449 -1.7711 13 6 8.6061 -4.7390 -2.4868 14 6 8.8901 -3.7910 -3.6505 15 7 8.6217 -4.4906 -4.9142 16 6 9.5750 -4.5489 -5.8955 17 1 10.6224 -4.5289 -5.6327 18 6 9.1952 -4.6336 -7.2280 19 7 10.0536 -5.0572 -8.1313 20 14 7.4657 -4.1466 -7.7390 21 1 6.5600 -5.3148 -7.5967 22 1 6.9865 -3.0402 -6.8721 23 1 7.4757 -3.6976 -9.1545 24 6 7.3132 -5.1318 -5.1027 25 6 7.0489 -6.0696 -3.9205 26 1 7.7738 -6.8836 -3.9327 27 8 5.7281 -6.6054 -4.0228 28 7 2.2198 -1.1083 -0.0047 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5142 32 1 1.8391 2.1307 0.0007 33 1 4.0435 -2.9818 0.5128 34 1 5.3962 -1.8248 0.5124 35 1 5.2540 -1.6597 -1.9577 36 1 3.9013 -2.8166 -1.9572 37 1 5.9142 -3.8038 -3.4519 38 1 8.7070 -4.2006 -1.5444 39 1 9.3166 -5.5653 -2.5116 40 1 9.9342 -3.4795 -3.6198 41 1 8.2435 -2.9169 -3.5723 42 1 9.7884 -5.1160 -9.0625 43 1 6.5355 -4.3694 -5.1453 44 1 7.3173 -5.7049 -6.0298 45 1 5.5714 -7.1136 -4.8304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099919432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:13 Heat of formation + Delta-G solvation = -47.978629 kcal Electronic energy + Delta-G solvation = -27346.614747 eV Core-core repulsion = 23490.377322 eV Total energy + Delta-G solvation = -3856.237424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38417 -40.82778 -39.55355 -36.99621 -35.77927 -35.17582 -33.88423 -32.36938 -31.64402 -30.65194 -28.56169 -27.58356 -26.68092 -24.55159 -23.52018 -23.16384 -21.69589 -20.68220 -20.41970 -18.94537 -18.74288 -18.29582 -18.17140 -17.22228 -16.87490 -16.62760 -16.20282 -15.99240 -15.87122 -15.45153 -15.32896 -15.05743 -14.80720 -14.62912 -14.29703 -14.01940 -13.85430 -13.73808 -13.63206 -13.31134 -13.27586 -13.18419 -12.88109 -12.72254 -12.59456 -12.26543 -12.22211 -12.18123 -11.94748 -11.69038 -11.38862 -11.17070 -10.89640 -10.62766 -10.61725 -10.38393 -10.04972 -9.64268 -8.94015 -8.17006 -5.53598 -0.29212 0.40770 0.79308 1.28496 1.43136 1.51402 1.65787 1.75143 2.19897 2.40370 2.91071 3.07913 3.15608 3.36088 3.66059 3.81531 3.93223 3.96973 4.06246 4.09243 4.19388 4.23684 4.28630 4.36403 4.39164 4.51798 4.58076 4.71166 4.75329 4.77155 4.83576 4.87501 4.91064 4.96224 4.97679 5.04096 5.07873 5.27134 5.36227 5.52590 5.85313 6.12865 6.53963 6.72129 6.78381 6.90117 7.23664 7.57846 7.97551 9.02529 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.002669 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.478513 B =10488.711995 C =10955.361030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.042 3.958 3 C -0.262 4.262 4 S 0.146 5.854 5 C 0.040 3.960 6 C -0.021 4.021 7 C -0.126 4.126 8 C 0.519 3.481 9 O -0.577 6.577 10 N -0.707 5.707 11 C 0.168 3.832 12 H 0.080 0.920 13 C -0.134 4.134 14 C 0.148 3.852 15 N -0.611 5.611 16 C -0.251 4.251 17 H 0.052 0.948 18 C -0.033 4.033 19 N -0.956 5.956 20 Si 0.948 3.052 21 H -0.264 1.264 22 H -0.261 1.261 23 H -0.315 1.315 24 C 0.096 3.904 25 C 0.091 3.909 26 H 0.067 0.933 27 O -0.570 6.570 28 N -0.499 5.499 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.203 0.797 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.115 0.885 36 H 0.106 0.894 37 H 0.406 0.594 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.262 0.738 43 H 0.041 0.959 44 H 0.062 0.938 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 10.962 15.791 26.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.401 4.401 4 S 0.401 5.599 5 C -0.238 4.238 6 C -0.063 4.063 7 C -0.167 4.167 8 C 0.307 3.693 9 O -0.457 6.457 10 N -0.358 5.358 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.173 4.173 14 C 0.023 3.977 15 N -0.337 5.337 16 C -0.380 4.380 17 H 0.070 0.930 18 C -0.229 4.229 19 N -0.602 5.602 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.185 1.185 23 H -0.244 1.244 24 C -0.030 4.030 25 C 0.029 3.971 26 H 0.085 0.915 27 O -0.377 6.377 28 N -0.215 5.215 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.220 0.780 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.242 0.758 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -16.770 10.930 16.962 26.237 hybrid contribution -1.138 -0.201 -1.776 2.119 sum -17.908 10.729 15.187 25.815 Atomic orbital electron populations 1.20435 0.85499 1.04060 1.03624 1.20787 0.99600 0.86482 1.02025 1.27209 0.94901 1.04936 1.13043 1.83991 1.07451 1.01414 1.67053 1.27032 0.93905 0.99315 1.03533 1.19882 0.95934 0.93688 0.96749 1.21596 0.99450 0.97339 0.98323 1.20839 0.81314 0.84078 0.83110 1.90673 1.60060 1.62791 1.32185 1.45974 1.45571 1.35300 1.09004 1.20693 0.88938 0.87555 0.96527 0.90192 1.22188 0.95204 1.00698 0.99254 1.20964 0.99652 0.93238 0.83826 1.44326 1.12767 1.60960 1.15657 1.18813 0.88330 1.44908 0.85984 0.93050 1.25996 1.01371 0.99780 0.95705 1.69955 1.38039 1.49803 1.02380 0.85947 0.81180 0.79520 0.75709 1.18991 1.18496 1.24426 1.22104 0.87659 0.95373 0.97878 1.22446 0.84562 0.95239 0.94820 0.91480 1.86431 1.30610 1.73286 1.47355 1.66158 1.05242 1.33113 1.16957 0.90002 0.91291 0.88562 0.77988 0.89371 0.88300 0.86711 0.87604 0.75793 0.90139 0.91031 0.92309 0.94316 0.92897 0.94088 0.91957 0.75750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.31 71.23 0.73 -0.20 16 2 C 0.04 0.77 6.74 41.52 0.28 1.05 16 3 C -0.26 -3.78 11.13 66.78 0.74 -3.04 16 4 S 0.15 2.29 23.18 -56.49 -1.31 0.98 16 5 C 0.04 0.80 6.64 88.52 0.59 1.39 16 6 C -0.02 -0.43 5.09 29.85 0.15 -0.28 16 7 C -0.13 -2.47 5.68 29.85 0.17 -2.31 16 8 C 0.52 13.71 7.79 87.66 0.68 14.39 16 9 O -0.58 -18.80 15.64 -3.02 -0.05 -18.85 16 10 N -0.71 -19.21 4.16 -442.41 -1.84 -21.05 16 11 C 0.17 5.10 2.47 45.02 0.11 5.21 16 12 H 0.08 2.58 7.58 -2.39 -0.02 2.56 16 13 C -0.13 -4.12 5.75 30.53 0.18 -3.95 16 14 C 0.15 5.27 6.23 86.22 0.54 5.80 16 15 N -0.61 -26.18 2.75 -699.92 -1.92 -28.10 16 16 C -0.25 -13.40 10.03 84.03 0.84 -12.55 16 17 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 18 C -0.03 -1.85 5.25 84.86 0.45 -1.41 16 19 N -0.96 -57.81 13.97 21.65 0.30 -57.51 16 20 Si 0.95 43.11 24.35 68.60 1.67 44.78 16 21 H -0.26 -10.87 6.40 99.48 0.64 -10.24 16 22 H -0.26 -11.19 6.93 99.48 0.69 -10.50 16 23 H -0.32 -14.96 7.11 99.48 0.71 -14.26 16 24 C 0.10 3.56 3.53 86.36 0.30 3.87 16 25 C 0.09 2.86 3.36 30.67 0.10 2.97 16 26 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 27 O -0.57 -15.99 13.21 -148.98 -1.97 -17.96 16 28 N -0.50 -11.31 10.53 -179.42 -1.89 -13.20 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 0.69 8.12 -2.39 -0.02 0.67 16 32 H 0.20 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.09 2.03 8.10 -2.39 -0.02 2.01 16 34 H 0.10 1.89 8.10 -2.38 -0.02 1.87 16 35 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.41 10.43 6.87 -92.71 -0.64 9.79 16 38 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.06 2.17 7.93 -2.39 -0.02 2.15 16 41 H 0.04 1.29 7.74 -2.38 -0.02 1.27 16 42 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.04 1.45 5.70 -2.39 -0.01 1.44 16 44 H 0.06 2.56 4.52 -2.39 -0.01 2.55 16 45 H 0.39 8.33 9.08 -74.06 -0.67 7.66 16 Total: -1.00 -70.22 373.39 -1.50 -71.72 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.37 Total: 28.24 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 5.87 Total: 10.94 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -5.35 Total: -119.86 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -2.02 Total: -36.80 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.67 Total: 44.78 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.31 Total: 0.98 kcal Total: -70.22 -1.50 -71.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099919432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.744 kcal (2) G-P(sol) polarization free energy of solvation -70.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds