Wall clock time and date at job start Tue Mar 31 2020 23:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29434 * 124.80520 * 2 1 4 4 C 1.30935 * 117.36313 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.90351 * 180.02562 * 4 3 2 6 6 C 1.35667 * 114.19588 * 0.02562 * 4 3 2 7 7 C 1.46674 * 126.13478 * 180.02562 * 6 4 3 8 8 O 1.21687 * 120.00043 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00388 * 179.97438 * 7 6 4 10 10 C 1.46502 * 120.00289 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.55421 * 60.12625 * 11 10 9 13 13 C 1.53294 * 109.51225 * 180.25616 * 11 10 9 14 14 N 1.47231 * 108.40580 * 172.23190 * 13 11 10 15 15 C 1.36930 * 121.03478 * 129.45775 * 14 13 11 16 16 H 1.08002 * 120.00530 * 206.18179 * 15 14 13 17 17 C 1.38816 * 119.99608 * 26.18409 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.88476 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.88547 * 17 15 14 20 20 H 1.48497 * 109.46975 * 59.99586 * 19 17 15 21 21 H 1.48495 * 109.47304 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47064 * 300.00118 * 19 17 15 23 23 C 1.47154 * 117.98080 * 309.48144 * 14 13 11 24 24 C 1.53298 * 108.41825 * 50.52276 * 23 14 13 25 25 O 1.42959 * 109.51185 * 300.00138 * 11 10 9 26 26 S 1.70956 * 124.80318 * 180.31629 * 2 1 3 27 27 H 1.09004 * 109.47130 * 89.97494 * 1 2 3 28 28 H 1.08992 * 109.47290 * 209.97532 * 1 2 3 29 29 H 1.09004 * 109.46743 * 329.97624 * 1 2 3 30 30 H 1.09001 * 109.47043 * 269.95767 * 5 4 3 31 31 H 1.08997 * 109.47374 * 29.95894 * 5 4 3 32 32 H 1.09002 * 109.47385 * 149.96318 * 5 4 3 33 33 H 0.97000 * 119.99622 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.46877 * 60.00024 * 10 9 7 35 35 H 1.08999 * 109.47195 * 299.99992 * 10 9 7 36 36 H 1.09004 * 109.46996 * 299.87189 * 12 11 10 37 37 H 1.08996 * 109.47344 * 59.87067 * 12 11 10 38 38 H 1.09000 * 109.46808 * 179.87595 * 12 11 10 39 39 H 1.09001 * 109.68145 * 291.94467 * 13 11 10 40 40 H 1.09001 * 109.68444 * 52.49853 * 13 11 10 41 41 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.68310 * 290.77594 * 23 14 13 43 43 H 1.09005 * 109.67869 * 170.26376 * 23 14 13 44 44 H 1.09001 * 109.51044 * 67.59999 * 24 23 14 45 45 H 1.09000 * 109.51036 * 187.70217 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 4.5197 2.0418 0.0000 6 6 3.9352 -0.4059 -0.0015 7 6 5.3188 -0.8926 -0.0018 8 8 6.2425 -0.1004 -0.0015 9 7 5.5673 -2.2173 -0.0023 10 6 6.9493 -2.7034 -0.0031 11 6 6.9517 -4.2334 -0.0043 12 6 6.2340 -4.7457 -1.2546 13 6 8.3974 -4.7431 0.0013 14 7 8.3748 -6.2033 0.1890 15 6 9.0719 -7.0334 -0.6476 16 1 8.7457 -8.0528 -0.7919 17 6 10.1980 -6.5647 -1.3104 18 7 10.7910 -5.4629 -0.9021 19 14 10.8717 -7.4977 -2.7818 20 1 9.8340 -7.5662 -3.8419 21 1 12.0697 -6.7950 -3.3073 22 1 11.2465 -8.8733 -2.3664 23 6 7.5796 -6.7440 1.3029 24 6 6.1737 -6.1368 1.2339 25 8 6.2790 -4.7128 1.1625 26 16 2.4827 -1.4037 -0.0077 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 4.7552 2.3189 -1.0276 31 1 4.0766 2.8947 0.5139 32 1 5.4332 1.7424 0.5139 33 1 4.8310 -2.8488 -0.0022 34 1 7.4629 -2.3395 0.8867 35 1 7.4621 -2.3390 -0.8932 36 1 5.2048 -4.3866 -1.2556 37 1 6.7473 -4.3798 -2.1438 38 1 6.2385 -5.8357 -1.2551 39 1 8.8751 -4.5028 -0.9485 40 1 8.9480 -4.2766 0.8182 41 1 11.5776 -5.1352 -1.3654 42 1 8.0479 -6.4789 2.2508 43 1 7.5158 -7.8287 1.2157 44 1 5.6596 -6.5087 0.3476 45 1 5.6121 -6.4169 2.1251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108385752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:20 Heat of formation + Delta-G solvation = -12.796559 kcal Electronic energy + Delta-G solvation = -27736.687094 eV Core-core repulsion = 23881.975279 eV Total energy + Delta-G solvation = -3854.711815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.51559 -39.53800 -38.62014 -35.03893 -34.37645 -33.22097 -31.89953 -31.29071 -29.51454 -28.68555 -27.97837 -26.40513 -25.44861 -23.27554 -23.19068 -22.00997 -21.00383 -19.74857 -18.65807 -18.12286 -17.24679 -16.80464 -15.97380 -15.77307 -15.45026 -15.12352 -14.75508 -14.52954 -14.36633 -14.10992 -13.95734 -13.67219 -13.52672 -13.49628 -13.11476 -12.82501 -12.77754 -12.55244 -12.49263 -12.25651 -11.93556 -11.63370 -11.52309 -11.23121 -11.04828 -10.84494 -10.71171 -10.35335 -10.30412 -10.18931 -10.01993 -9.82511 -9.72607 -9.58093 -9.11361 -9.03336 -8.81600 -8.56797 -6.77896 -5.87605 -3.31005 0.03937 0.93477 1.34538 2.26054 3.12735 3.17110 3.32704 3.39214 3.39578 3.72591 4.19542 4.40812 4.58643 4.76433 4.93470 4.99142 5.02596 5.10365 5.30623 5.40457 5.42026 5.47456 5.57512 5.62884 5.66337 5.73982 5.87916 5.89698 5.95758 6.03489 6.09231 6.18727 6.27471 6.39449 6.50529 6.61592 6.71008 6.78550 7.03170 7.36122 7.42280 7.53185 7.67362 7.82984 8.17199 8.29634 9.07381 9.70532 10.27747 11.20475 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.002763 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.870895 B =10132.099682 C =10728.835017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.059 3.941 3 N -0.479 5.479 4 C 0.147 3.853 5 C -0.089 4.089 6 C -0.294 4.294 7 C 0.592 3.408 8 O -0.526 6.526 9 N -0.710 5.710 10 C 0.140 3.860 11 C 0.077 3.923 12 C -0.162 4.162 13 C 0.160 3.840 14 N -0.590 5.590 15 C -0.256 4.256 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.282 1.282 23 C 0.109 3.891 24 C 0.046 3.954 25 O -0.385 6.385 26 S 0.160 5.840 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.400 0.600 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.257 0.743 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.959 8.483 1.552 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.217 4.217 3 N -0.195 5.195 4 C 0.010 3.990 5 C -0.148 4.148 6 C -0.418 4.418 7 C 0.377 3.623 8 O -0.405 6.405 9 N -0.361 5.361 10 C 0.017 3.983 11 C 0.036 3.964 12 C -0.220 4.220 13 C 0.034 3.966 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.086 0.914 17 C -0.195 4.195 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.208 1.208 23 C -0.017 4.017 24 C -0.032 4.032 25 O -0.304 6.304 26 S 0.417 5.583 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.235 0.765 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.677 8.585 1.613 21.529 hybrid contribution 0.698 -0.388 -0.910 1.211 sum -18.980 8.197 0.703 20.686 Atomic orbital electron populations 1.20528 0.84687 1.04609 1.04255 1.27379 1.02081 0.91266 1.00941 1.66095 1.04484 1.31301 1.17612 1.20674 0.89827 0.93739 0.94793 1.20672 0.97016 0.93383 1.03755 1.25521 0.98055 0.97139 1.21099 1.16659 0.85841 0.82741 0.77042 1.90789 1.44176 1.54879 1.50613 1.45887 1.10128 1.05818 1.74247 1.21444 0.81371 0.92208 1.03287 1.22570 0.97165 0.91278 0.85375 1.22215 0.98513 1.03330 0.97936 1.21300 0.88565 0.83956 1.02813 1.43999 1.55439 1.01753 1.30195 1.19110 1.04832 0.95334 1.19212 0.91440 1.25037 0.95704 0.98153 1.00571 1.69997 1.20570 1.23918 1.40046 0.86358 0.78186 0.79256 0.82912 1.20974 1.21521 1.20839 1.21596 0.90908 0.97379 0.91840 1.23047 0.98348 0.81430 1.00397 1.87812 1.78282 1.21427 1.42907 1.83948 0.96611 1.11297 1.66445 0.89135 0.89699 0.88921 0.90091 0.90859 0.87969 0.76519 0.90421 0.89665 0.94112 0.91771 0.90651 0.88480 0.95162 0.93327 0.95621 0.92022 0.93360 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.46 36.01 0.38 -0.07 16 2 C 0.06 0.57 7.39 -13.29 -0.10 0.47 16 3 N -0.48 -5.86 10.50 -7.70 -0.08 -5.94 16 4 C 0.15 1.94 6.79 -83.89 -0.57 1.37 16 5 C -0.09 -1.06 9.69 36.01 0.35 -0.71 16 6 C -0.29 -3.94 6.48 -37.10 -0.24 -4.18 16 7 C 0.59 9.21 7.78 -12.86 -0.10 9.11 16 8 O -0.53 -9.43 14.27 5.20 0.07 -9.36 16 9 N -0.71 -10.64 5.15 -61.62 -0.32 -10.95 16 10 C 0.14 2.39 4.82 -4.04 -0.02 2.37 16 11 C 0.08 1.41 0.76 -90.47 -0.07 1.35 16 12 C -0.16 -2.74 7.92 37.16 0.29 -2.45 16 13 C 0.16 3.67 4.12 -3.49 -0.01 3.65 16 14 N -0.59 -14.13 2.57 -171.76 -0.44 -14.58 16 15 C -0.26 -6.70 9.65 -15.06 -0.15 -6.85 16 16 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 17 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 18 N -0.90 -25.37 11.14 55.49 0.62 -24.75 16 19 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.11 2.20 6.73 -3.53 -0.02 2.17 16 24 C 0.05 0.77 6.60 37.31 0.25 1.02 16 25 O -0.38 -6.98 9.97 -35.23 -0.35 -7.33 16 26 S 0.16 1.61 22.31 -107.50 -2.40 -0.79 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.36 6.01 -51.93 -0.31 1.05 16 33 H 0.40 5.43 6.39 -40.82 -0.26 5.17 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.04 0.58 6.88 -51.93 -0.36 0.22 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.38 6.11 -51.93 -0.32 1.07 16 39 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 44 H 0.05 0.79 6.25 -51.93 -0.32 0.46 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -31.08 372.44 -8.92 -39.99 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.50 Total: 4.80 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -0.10 Total: 7.28 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.22 Total: -56.22 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.28 Total: -16.68 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.40 Total: -0.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.08 -8.92 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108385752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.197 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds