Wall clock time and date at job start Tue Mar 31 2020 23:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29434 * 124.80520 * 2 1 4 4 C 1.30935 * 117.36313 * 180.02562 * 3 2 1 5 5 C 1.50700 * 122.90351 * 180.02562 * 4 3 2 6 6 C 1.35667 * 114.19588 * 0.02562 * 4 3 2 7 7 C 1.46674 * 126.13478 * 180.02562 * 6 4 3 8 8 O 1.21687 * 120.00043 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00388 * 179.97438 * 7 6 4 10 10 C 1.46502 * 120.00289 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.55421 * 60.12625 * 11 10 9 13 13 C 1.53294 * 109.51225 * 180.25616 * 11 10 9 14 14 N 1.47231 * 108.40580 * 172.23190 * 13 11 10 15 15 C 1.36930 * 121.03478 * 129.45775 * 14 13 11 16 16 H 1.08002 * 120.00530 * 206.18179 * 15 14 13 17 17 C 1.38816 * 119.99608 * 26.18409 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.88476 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.88547 * 17 15 14 20 20 H 1.48497 * 109.46975 * 59.99586 * 19 17 15 21 21 H 1.48495 * 109.47304 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47064 * 300.00118 * 19 17 15 23 23 C 1.47154 * 117.98080 * 309.48144 * 14 13 11 24 24 C 1.53298 * 108.41825 * 50.52276 * 23 14 13 25 25 O 1.42959 * 109.51185 * 300.00138 * 11 10 9 26 26 S 1.70956 * 124.80318 * 180.31629 * 2 1 3 27 27 H 1.09004 * 109.47130 * 89.97494 * 1 2 3 28 28 H 1.08992 * 109.47290 * 209.97532 * 1 2 3 29 29 H 1.09004 * 109.46743 * 329.97624 * 1 2 3 30 30 H 1.09001 * 109.47043 * 269.95767 * 5 4 3 31 31 H 1.08997 * 109.47374 * 29.95894 * 5 4 3 32 32 H 1.09002 * 109.47385 * 149.96318 * 5 4 3 33 33 H 0.97000 * 119.99622 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.46877 * 60.00024 * 10 9 7 35 35 H 1.08999 * 109.47195 * 299.99992 * 10 9 7 36 36 H 1.09004 * 109.46996 * 299.87189 * 12 11 10 37 37 H 1.08996 * 109.47344 * 59.87067 * 12 11 10 38 38 H 1.09000 * 109.46808 * 179.87595 * 12 11 10 39 39 H 1.09001 * 109.68145 * 291.94467 * 13 11 10 40 40 H 1.09001 * 109.68444 * 52.49853 * 13 11 10 41 41 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.68310 * 290.77594 * 23 14 13 43 43 H 1.09005 * 109.67869 * 170.26376 * 23 14 13 44 44 H 1.09001 * 109.51044 * 67.59999 * 24 23 14 45 45 H 1.09000 * 109.51036 * 187.70217 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 4.5197 2.0418 0.0000 6 6 3.9352 -0.4059 -0.0015 7 6 5.3188 -0.8926 -0.0018 8 8 6.2425 -0.1004 -0.0015 9 7 5.5673 -2.2173 -0.0023 10 6 6.9493 -2.7034 -0.0031 11 6 6.9517 -4.2334 -0.0043 12 6 6.2340 -4.7457 -1.2546 13 6 8.3974 -4.7431 0.0013 14 7 8.3748 -6.2033 0.1890 15 6 9.0719 -7.0334 -0.6476 16 1 8.7457 -8.0528 -0.7919 17 6 10.1980 -6.5647 -1.3104 18 7 10.7910 -5.4629 -0.9021 19 14 10.8717 -7.4977 -2.7818 20 1 9.8340 -7.5662 -3.8419 21 1 12.0697 -6.7950 -3.3073 22 1 11.2465 -8.8733 -2.3664 23 6 7.5796 -6.7440 1.3029 24 6 6.1737 -6.1368 1.2339 25 8 6.2790 -4.7128 1.1625 26 16 2.4827 -1.4037 -0.0077 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 4.7552 2.3189 -1.0276 31 1 4.0766 2.8947 0.5139 32 1 5.4332 1.7424 0.5139 33 1 4.8310 -2.8488 -0.0022 34 1 7.4629 -2.3395 0.8867 35 1 7.4621 -2.3390 -0.8932 36 1 5.2048 -4.3866 -1.2556 37 1 6.7473 -4.3798 -2.1438 38 1 6.2385 -5.8357 -1.2551 39 1 8.8751 -4.5028 -0.9485 40 1 8.9480 -4.2766 0.8182 41 1 11.5776 -5.1352 -1.3654 42 1 8.0479 -6.4789 2.2508 43 1 7.5158 -7.8287 1.2157 44 1 5.6596 -6.5087 0.3476 45 1 5.6121 -6.4169 2.1251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108385752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:02:19 Heat of formation + Delta-G solvation = -33.885033 kcal Electronic energy + Delta-G solvation = -27737.601559 eV Core-core repulsion = 23881.975279 eV Total energy + Delta-G solvation = -3855.626280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.55511 -40.85516 -39.92758 -36.59129 -35.99100 -34.02960 -33.32844 -33.18354 -30.20818 -29.81333 -29.51990 -28.02307 -26.98798 -24.99656 -23.96160 -23.34497 -22.43210 -20.91210 -20.15385 -19.09247 -18.85697 -18.08304 -17.44046 -16.96537 -16.74972 -16.57283 -16.13638 -15.85425 -15.58201 -15.54254 -15.28506 -15.11056 -14.70597 -14.53148 -14.44555 -14.22391 -13.94654 -13.51817 -13.36769 -13.24256 -13.19268 -12.96705 -12.93798 -12.76101 -12.54645 -12.44750 -12.40242 -12.18525 -11.97888 -11.85067 -11.29441 -11.11609 -10.82170 -10.73937 -10.63638 -10.50123 -10.23890 -9.74291 -8.72049 -7.89493 -5.36051 -0.84538 0.11301 0.49191 1.31590 1.46722 1.48794 1.55557 1.93011 2.02363 2.48451 2.76362 2.98396 3.25026 3.48411 3.67663 3.87305 3.89797 3.98082 4.06259 4.08141 4.41148 4.45747 4.53775 4.54324 4.60580 4.64610 4.67530 4.69656 4.70289 4.76485 4.87926 4.93811 5.02876 5.09058 5.11683 5.18368 5.21121 5.33754 5.34063 5.52943 5.61693 6.28550 6.29905 6.35475 6.55539 6.98535 7.07049 7.76312 8.30481 9.16186 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.002763 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.870895 B =10132.099682 C =10728.835017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.069 3.931 3 N -0.504 5.504 4 C 0.145 3.855 5 C -0.088 4.088 6 C -0.333 4.333 7 C 0.593 3.407 8 O -0.559 6.559 9 N -0.701 5.701 10 C 0.150 3.850 11 C 0.093 3.907 12 C -0.154 4.154 13 C 0.169 3.831 14 N -0.607 5.607 15 C -0.260 4.260 16 H 0.074 0.926 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.276 1.276 23 C 0.102 3.898 24 C 0.052 3.948 25 O -0.386 6.386 26 S 0.206 5.794 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.409 0.591 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.068 0.932 40 H -0.006 1.006 41 H 0.250 0.750 42 H 0.012 0.988 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.678 7.553 1.205 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.205 4.205 3 N -0.220 5.220 4 C 0.006 3.994 5 C -0.147 4.147 6 C -0.457 4.457 7 C 0.379 3.621 8 O -0.440 6.440 9 N -0.353 5.353 10 C 0.026 3.974 11 C 0.052 3.948 12 C -0.211 4.211 13 C 0.042 3.958 14 N -0.331 5.331 15 C -0.390 4.390 16 H 0.092 0.908 17 C -0.245 4.245 18 N -0.582 5.582 19 Si 0.794 3.206 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.201 1.201 23 C -0.024 4.024 24 C -0.025 4.025 25 O -0.306 6.306 26 S 0.464 5.536 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.118 0.882 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.245 0.755 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.012 0.988 41 H 0.060 0.940 42 H 0.030 0.970 43 H 0.091 0.909 44 H 0.080 0.920 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.455 7.614 1.282 24.693 hybrid contribution 1.750 -0.122 -0.715 1.894 sum -21.705 7.492 0.567 22.968 Atomic orbital electron populations 1.20814 0.81494 1.06156 1.05883 1.28220 1.03816 0.90692 0.97778 1.66183 1.04018 1.32369 1.19478 1.20863 0.90597 0.93904 0.94010 1.20626 0.96333 0.93822 1.03890 1.25312 0.98164 0.98283 1.23907 1.16947 0.86693 0.82344 0.76081 1.90769 1.45644 1.55574 1.52015 1.45679 1.09231 1.06026 1.74351 1.21140 0.82608 0.91420 1.02281 1.22207 0.94285 0.91762 0.86584 1.22121 1.00025 1.02502 0.96488 1.21051 0.91176 0.83808 0.99781 1.44253 1.55700 1.01891 1.31237 1.19466 1.04615 0.95801 1.19069 0.90831 1.25783 0.96376 0.99185 1.03119 1.70168 1.21042 1.25696 1.41280 0.85363 0.77228 0.78052 0.79951 1.20075 1.22411 1.20134 1.21817 0.92319 0.98324 0.89891 1.23131 0.96283 0.80252 1.02871 1.87824 1.77653 1.22428 1.42690 1.83686 0.94181 1.10101 1.65656 0.87211 0.87251 0.88240 0.89727 0.89452 0.89823 0.75452 0.92093 0.90302 0.90838 0.92441 0.91685 0.91346 0.98799 0.94044 0.96981 0.90910 0.92017 0.86349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.46 71.24 0.75 0.16 16 2 C 0.07 1.15 7.39 88.46 0.65 1.80 16 3 N -0.50 -11.43 10.50 -178.28 -1.87 -13.30 16 4 C 0.15 3.72 6.79 42.10 0.29 4.00 16 5 C -0.09 -2.11 9.69 71.24 0.69 -1.42 16 6 C -0.33 -8.63 6.48 23.88 0.15 -8.48 16 7 C 0.59 18.51 7.78 86.45 0.67 19.19 16 8 O -0.56 -20.82 14.27 -4.31 -0.06 -20.88 16 9 N -0.70 -20.63 5.15 -467.09 -2.41 -23.03 16 10 C 0.15 5.22 4.82 86.38 0.42 5.63 16 11 C 0.09 3.39 0.76 -10.69 -0.01 3.38 16 12 C -0.15 -4.98 7.92 71.98 0.57 -4.41 16 13 C 0.17 8.01 4.12 86.34 0.36 8.37 16 14 N -0.61 -29.39 2.57 -697.32 -1.79 -31.18 16 15 C -0.26 -13.69 9.65 84.04 0.81 -12.88 16 16 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 17 C -0.05 -2.67 4.95 84.86 0.42 -2.25 16 18 N -0.94 -54.74 11.14 21.65 0.24 -54.50 16 19 Si 0.97 43.78 29.59 68.60 2.03 45.80 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C 0.10 4.02 6.73 86.35 0.58 4.60 16 24 C 0.05 1.61 6.60 72.08 0.48 2.09 16 25 O -0.39 -13.40 9.97 -148.98 -1.49 -14.89 16 26 S 0.21 3.56 22.31 -56.49 -1.26 2.30 16 27 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.08 2.33 6.01 -2.39 -0.01 2.32 16 33 H 0.41 10.30 6.39 -92.71 -0.59 9.71 16 34 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.07 1.88 6.88 -2.38 -0.02 1.87 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.06 2.26 6.11 -2.39 -0.01 2.25 16 39 H 0.07 3.64 6.14 -2.39 -0.01 3.62 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.07 2.67 7.96 -2.38 -0.02 2.65 16 44 H 0.06 1.80 6.25 -2.39 -0.01 1.78 16 45 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -69.80 372.44 0.65 -69.15 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.43 Total: 20.74 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 6.82 Total: 19.78 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -5.83 Total: -122.01 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.55 Total: -35.77 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.26 Total: 2.30 kcal Total: -69.80 0.65 -69.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108385752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.267 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds