Wall clock time and date at job start Tue Mar 31 2020 22:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.51074 * 2 1 4 4 N 1.46502 * 109.47269 * 60.10061 * 3 2 1 5 5 C 1.34772 * 119.99716 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00557 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99501 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.46867 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47325 * 179.97438 * 8 7 5 10 10 N 1.29023 * 124.91205 * 89.99695 * 9 8 7 11 11 C 1.31786 * 117.12323 * 179.97438 * 10 9 8 12 12 C 1.33635 * 114.49920 * 0.02562 * 11 10 9 13 13 S 1.70978 * 124.91923 * 269.70183 * 9 8 7 14 14 C 1.53290 * 109.55364 * 239.87151 * 2 1 3 15 15 N 1.47232 * 108.40798 * 292.35767 * 14 2 1 16 16 C 1.36930 * 121.03328 * 129.46021 * 15 14 2 17 17 H 1.08002 * 120.00530 * 206.18598 * 16 15 14 18 18 C 1.38816 * 119.99608 * 26.18827 * 16 15 14 19 19 N 1.31615 * 120.00526 * 16.88476 * 18 16 15 20 20 Si 1.86806 * 119.99896 * 196.88547 * 18 16 15 21 21 H 1.48493 * 109.47161 * 89.99376 * 20 18 16 22 22 H 1.48497 * 109.47448 * 210.00216 * 20 18 16 23 23 H 1.48503 * 109.46954 * 330.00010 * 20 18 16 24 24 C 1.47154 * 117.98230 * 309.48797 * 15 14 2 25 25 C 1.53298 * 108.41825 * 50.51870 * 24 15 14 26 26 O 1.42959 * 109.50925 * 120.09966 * 2 1 3 27 27 H 1.08996 * 109.47525 * 299.90181 * 1 2 3 28 28 H 1.09004 * 109.47010 * 59.89918 * 1 2 3 29 29 H 1.09003 * 109.47551 * 179.89847 * 1 2 3 30 30 H 1.09002 * 109.46970 * 180.09758 * 3 2 1 31 31 H 1.08999 * 109.47186 * 300.09842 * 3 2 1 32 32 H 0.97000 * 120.00089 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47291 * 299.99677 * 7 5 4 34 34 H 1.08999 * 109.47236 * 60.00311 * 7 5 4 35 35 H 1.09001 * 109.47331 * 300.00450 * 8 7 5 36 36 H 1.08999 * 109.46999 * 60.00091 * 8 7 5 37 37 H 1.07998 * 122.74902 * 180.02562 * 11 10 9 38 38 H 1.08002 * 126.03559 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.68414 * 52.07585 * 14 2 1 40 40 H 1.09001 * 109.68139 * 172.62949 * 14 2 1 41 41 H 0.97002 * 120.00383 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.68310 * 290.77188 * 24 15 14 43 43 H 1.09005 * 109.67869 * 170.25970 * 24 15 14 44 44 H 1.09001 * 109.51044 * 67.59999 * 25 24 15 45 45 H 1.09000 * 109.51036 * 187.70217 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5551 2.1324 1.1974 5 6 1.8824 3.4222 1.4110 6 8 2.5795 4.0113 0.6124 7 6 1.3821 4.1324 2.6425 8 6 1.8932 5.5746 2.6425 9 6 1.3925 6.2850 3.8736 10 7 2.0112 6.3269 5.0051 11 6 1.4317 6.9946 5.9824 12 6 0.2587 7.5462 5.6573 13 16 -0.0742 7.1583 3.9711 14 6 2.0430 -0.7250 -1.2493 15 7 1.6979 -2.1517 -1.1336 16 6 1.0642 -2.8096 -2.1536 17 1 0.4524 -3.6739 -1.9411 18 6 1.2080 -2.3657 -3.4610 19 7 2.1883 -1.5449 -3.7733 20 14 0.0101 -2.9333 -4.7773 21 1 -1.1342 -1.9895 -4.8453 22 1 0.7001 -2.9706 -6.0917 23 1 -0.4878 -4.2914 -4.4410 24 6 2.0541 -2.8493 0.1121 25 6 1.5404 -2.0208 1.2952 26 8 2.0074 -0.6758 1.1658 27 1 -0.3634 0.5123 0.8908 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3634 -1.0277 -0.0018 30 1 3.1310 1.4414 -0.0018 31 1 1.6766 1.9567 -0.8891 32 1 0.9979 1.6612 1.8364 33 1 0.2921 4.1337 2.6436 34 1 1.7458 3.6177 3.5318 35 1 2.9832 5.5737 2.6411 36 1 1.5292 6.0890 1.7533 37 1 1.8689 7.0883 6.9654 38 1 -0.3715 8.1308 6.3112 39 1 1.5715 -0.3045 -2.1375 40 1 3.1250 -0.6138 -1.3200 41 1 2.2886 -1.2345 -4.6868 42 1 3.1372 -2.9520 0.1786 43 1 1.5904 -3.8357 0.1259 44 1 0.4505 -2.0289 1.2994 45 1 1.9113 -2.4478 2.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108406064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:24 Heat of formation + Delta-G solvation = -14.508697 kcal Electronic energy + Delta-G solvation = -27058.152037 eV Core-core repulsion = 23203.365978 eV Total energy + Delta-G solvation = -3854.786059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.11767 -39.70310 -38.79131 -35.03007 -34.36129 -34.05832 -31.80167 -31.27449 -29.99044 -27.97695 -27.11252 -26.18318 -25.16336 -23.34637 -23.21059 -21.24414 -20.32823 -20.13790 -18.71699 -18.33552 -17.26665 -16.90598 -16.04145 -15.81719 -15.73430 -15.38363 -15.07631 -14.74564 -14.36930 -14.30289 -14.02738 -13.86636 -13.52498 -13.43386 -13.12591 -12.86057 -12.69633 -12.45689 -12.31739 -11.89338 -11.83408 -11.60897 -11.37127 -11.21359 -11.03458 -10.84231 -10.69736 -10.33040 -10.26030 -10.03648 -9.96090 -9.83517 -9.72768 -9.55151 -9.21418 -9.06051 -8.83419 -8.56087 -6.76632 -5.86465 -3.29985 0.35925 1.02565 1.42072 2.49876 2.73305 3.26701 3.32916 3.39684 3.41114 3.87732 4.23123 4.41716 4.56205 4.74847 4.80766 4.87658 5.06569 5.13672 5.14427 5.29803 5.32705 5.46114 5.50342 5.57466 5.66093 5.76387 5.86585 5.89805 5.92081 6.00579 6.08125 6.12312 6.29709 6.43663 6.55676 6.66753 6.74053 6.80461 7.05172 7.41725 7.44567 7.64932 7.68841 7.86004 8.30524 8.33631 9.08607 9.71684 10.28975 11.21489 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.002107 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.942630 B =13288.964575 C =13741.140962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 C 0.139 3.861 4 N -0.716 5.716 5 C 0.511 3.489 6 O -0.545 6.545 7 C -0.134 4.134 8 C -0.029 4.029 9 C 0.057 3.943 10 N -0.474 5.474 11 C 0.040 3.960 12 C -0.265 4.265 13 S 0.121 5.879 14 C 0.159 3.841 15 N -0.591 5.591 16 C -0.254 4.254 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.402 0.598 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.256 0.744 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.153 14.879 17.776 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.016 3.984 4 N -0.367 5.367 5 C 0.297 3.703 6 O -0.423 6.423 7 C -0.176 4.176 8 C -0.071 4.071 9 C -0.221 4.221 10 N -0.188 5.188 11 C -0.111 4.111 12 C -0.404 4.404 13 S 0.375 5.625 14 C 0.032 3.968 15 N -0.314 5.314 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C -0.018 4.018 25 C -0.032 4.032 26 O -0.304 6.304 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.237 0.763 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.193 0.807 38 H 0.194 0.806 39 H 0.115 0.885 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.780 15.372 16.490 23.273 hybrid contribution -0.665 -0.596 0.417 0.986 sum -6.445 14.776 16.908 23.361 Atomic orbital electron populations 1.22205 0.95771 1.03230 1.00702 1.22551 0.93541 0.90698 0.89519 1.21368 0.99955 0.89905 0.87221 1.45980 1.53322 1.11596 1.25827 1.20403 0.80576 0.82079 0.87252 1.90718 1.38115 1.66204 1.47232 1.21622 1.02626 0.95342 0.97982 1.20014 1.03351 0.92908 0.90791 1.27199 0.95313 1.01581 0.98031 1.66312 1.33779 1.19255 0.99488 1.21851 0.92834 0.96919 0.99535 1.27105 1.03316 1.10881 0.99141 1.84140 1.23185 1.47188 1.08012 1.21312 0.97843 0.83929 0.93674 1.44014 1.68678 1.04940 1.13793 1.19166 1.21701 1.12105 0.85375 0.91387 1.25045 0.97291 1.00125 0.97100 1.70011 1.29189 1.36746 1.18577 0.86273 0.80682 0.78437 0.81280 1.21370 1.21673 1.20441 1.21598 0.97567 0.95226 0.87364 1.23033 0.98282 0.83127 0.98730 1.87812 1.72976 1.25804 1.43764 0.93943 0.91896 0.90836 0.90821 0.90044 0.76264 0.88765 0.88180 0.87702 0.88612 0.80741 0.80612 0.88528 0.95233 0.93405 0.95650 0.92065 0.93404 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 7.92 37.16 0.29 -2.37 16 2 C 0.08 1.41 0.76 -90.47 -0.07 1.34 16 3 C 0.14 2.32 4.82 -4.04 -0.02 2.30 16 4 N -0.72 -9.70 5.15 -60.29 -0.31 -10.01 16 5 C 0.51 6.86 7.83 -10.98 -0.09 6.77 16 6 O -0.54 -9.33 15.98 5.56 0.09 -9.24 16 7 C -0.13 -1.28 5.68 -27.88 -0.16 -1.44 16 8 C -0.03 -0.29 5.09 -27.88 -0.14 -0.43 16 9 C 0.06 0.55 6.64 -13.46 -0.09 0.46 16 10 N -0.47 -5.12 10.54 -11.86 -0.13 -5.24 16 11 C 0.04 0.33 11.35 -19.18 -0.22 0.11 16 12 C -0.27 -1.84 11.36 29.12 0.33 -1.51 16 13 S 0.12 0.93 23.18 -107.50 -2.49 -1.56 16 14 C 0.16 3.65 4.12 -3.49 -0.01 3.63 16 15 N -0.59 -14.18 2.57 -171.76 -0.44 -14.62 16 16 C -0.25 -6.68 9.65 -15.06 -0.15 -6.82 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 19 N -0.90 -25.44 11.14 55.49 0.62 -24.82 16 20 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C 0.11 2.20 6.73 -3.53 -0.02 2.18 16 25 C 0.05 0.78 6.60 37.31 0.25 1.03 16 26 O -0.38 -6.89 9.97 -35.23 -0.35 -7.24 16 27 H 0.04 0.57 6.87 -51.93 -0.36 0.22 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.34 6.12 -51.93 -0.32 1.02 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.40 4.72 7.20 -40.82 -0.29 4.43 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 37 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.10 2.45 6.14 -51.93 -0.32 2.13 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 44 H 0.05 0.78 6.25 -51.93 -0.32 0.45 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -31.72 377.13 -9.18 -40.91 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -6.64 Total: 4.84 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.18 Total: 5.25 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.26 Total: -54.69 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.26 Total: -16.49 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.72 -9.18 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108406064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.399 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds