Wall clock time and date at job start Tue Mar 31 2020 22:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.51074 * 2 1 4 4 N 1.46502 * 109.47269 * 60.10061 * 3 2 1 5 5 C 1.34772 * 119.99716 * 179.97438 * 4 3 2 6 6 O 1.21276 * 120.00557 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99501 * 179.97438 * 5 4 3 8 8 C 1.53001 * 109.46867 * 180.02562 * 7 5 4 9 9 C 1.50703 * 109.47325 * 179.97438 * 8 7 5 10 10 N 1.29023 * 124.91205 * 89.99695 * 9 8 7 11 11 C 1.31786 * 117.12323 * 179.97438 * 10 9 8 12 12 C 1.33635 * 114.49920 * 0.02562 * 11 10 9 13 13 S 1.70978 * 124.91923 * 269.70183 * 9 8 7 14 14 C 1.53290 * 109.55364 * 239.87151 * 2 1 3 15 15 N 1.47232 * 108.40798 * 292.35767 * 14 2 1 16 16 C 1.36930 * 121.03328 * 129.46021 * 15 14 2 17 17 H 1.08002 * 120.00530 * 206.18598 * 16 15 14 18 18 C 1.38816 * 119.99608 * 26.18827 * 16 15 14 19 19 N 1.31615 * 120.00526 * 16.88476 * 18 16 15 20 20 Si 1.86806 * 119.99896 * 196.88547 * 18 16 15 21 21 H 1.48493 * 109.47161 * 89.99376 * 20 18 16 22 22 H 1.48497 * 109.47448 * 210.00216 * 20 18 16 23 23 H 1.48503 * 109.46954 * 330.00010 * 20 18 16 24 24 C 1.47154 * 117.98230 * 309.48797 * 15 14 2 25 25 C 1.53298 * 108.41825 * 50.51870 * 24 15 14 26 26 O 1.42959 * 109.50925 * 120.09966 * 2 1 3 27 27 H 1.08996 * 109.47525 * 299.90181 * 1 2 3 28 28 H 1.09004 * 109.47010 * 59.89918 * 1 2 3 29 29 H 1.09003 * 109.47551 * 179.89847 * 1 2 3 30 30 H 1.09002 * 109.46970 * 180.09758 * 3 2 1 31 31 H 1.08999 * 109.47186 * 300.09842 * 3 2 1 32 32 H 0.97000 * 120.00089 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.47291 * 299.99677 * 7 5 4 34 34 H 1.08999 * 109.47236 * 60.00311 * 7 5 4 35 35 H 1.09001 * 109.47331 * 300.00450 * 8 7 5 36 36 H 1.08999 * 109.46999 * 60.00091 * 8 7 5 37 37 H 1.07998 * 122.74902 * 180.02562 * 11 10 9 38 38 H 1.08002 * 126.03559 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.68414 * 52.07585 * 14 2 1 40 40 H 1.09001 * 109.68139 * 172.62949 * 14 2 1 41 41 H 0.97002 * 120.00383 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.68310 * 290.77188 * 24 15 14 43 43 H 1.09005 * 109.67869 * 170.25970 * 24 15 14 44 44 H 1.09001 * 109.51044 * 67.59999 * 25 24 15 45 45 H 1.09000 * 109.51036 * 187.70217 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5551 2.1324 1.1974 5 6 1.8824 3.4222 1.4110 6 8 2.5795 4.0113 0.6124 7 6 1.3821 4.1324 2.6425 8 6 1.8932 5.5746 2.6425 9 6 1.3925 6.2850 3.8736 10 7 2.0112 6.3269 5.0051 11 6 1.4317 6.9946 5.9824 12 6 0.2587 7.5462 5.6573 13 16 -0.0742 7.1583 3.9711 14 6 2.0430 -0.7250 -1.2493 15 7 1.6979 -2.1517 -1.1336 16 6 1.0642 -2.8096 -2.1536 17 1 0.4524 -3.6739 -1.9411 18 6 1.2080 -2.3657 -3.4610 19 7 2.1883 -1.5449 -3.7733 20 14 0.0101 -2.9333 -4.7773 21 1 -1.1342 -1.9895 -4.8453 22 1 0.7001 -2.9706 -6.0917 23 1 -0.4878 -4.2914 -4.4410 24 6 2.0541 -2.8493 0.1121 25 6 1.5404 -2.0208 1.2952 26 8 2.0074 -0.6758 1.1658 27 1 -0.3634 0.5123 0.8908 28 1 -0.3633 0.5154 -0.8891 29 1 -0.3634 -1.0277 -0.0018 30 1 3.1310 1.4414 -0.0018 31 1 1.6766 1.9567 -0.8891 32 1 0.9979 1.6612 1.8364 33 1 0.2921 4.1337 2.6436 34 1 1.7458 3.6177 3.5318 35 1 2.9832 5.5737 2.6411 36 1 1.5292 6.0890 1.7533 37 1 1.8689 7.0883 6.9654 38 1 -0.3715 8.1308 6.3112 39 1 1.5715 -0.3045 -2.1375 40 1 3.1250 -0.6138 -1.3200 41 1 2.2886 -1.2345 -4.6868 42 1 3.1372 -2.9520 0.1786 43 1 1.5904 -3.8357 0.1259 44 1 0.4505 -2.0289 1.2994 45 1 1.9113 -2.4478 2.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108406064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:23 Heat of formation + Delta-G solvation = -36.210546 kcal Electronic energy + Delta-G solvation = -27059.093100 eV Core-core repulsion = 23203.365978 eV Total energy + Delta-G solvation = -3855.727122 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18182 -40.62174 -40.12463 -36.55680 -35.92570 -34.89733 -33.25354 -33.11631 -30.69795 -29.56666 -28.22486 -27.78665 -26.33323 -24.98145 -24.11623 -22.82001 -21.40969 -20.81842 -20.27028 -19.00345 -18.93428 -18.13284 -17.44753 -16.94409 -16.85230 -16.47643 -16.36751 -16.06426 -15.62757 -15.55130 -15.27533 -15.11716 -14.96119 -14.63118 -14.56167 -14.14615 -13.77278 -13.65937 -13.32061 -13.15155 -13.11490 -12.90876 -12.78360 -12.50878 -12.44174 -12.39292 -12.14081 -12.12194 -11.94436 -11.83191 -11.17222 -10.96100 -10.73542 -10.58731 -10.49170 -10.34699 -10.07887 -9.80984 -8.71501 -7.88978 -5.35871 -0.24472 0.44019 0.83501 1.46764 1.47963 1.56705 1.65534 1.86103 2.18758 2.48964 2.80736 3.19274 3.26178 3.51869 3.72060 3.92711 4.02321 4.03743 4.12201 4.13564 4.29739 4.43404 4.44076 4.47833 4.57006 4.59065 4.60227 4.67663 4.73068 4.81390 4.85997 4.99049 5.01628 5.06666 5.13922 5.22249 5.25952 5.37880 5.41903 5.54782 5.62310 6.29915 6.38509 6.57840 6.81133 7.07470 7.26454 7.76785 8.30952 9.16603 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.002107 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.942630 B =13288.964575 C =13741.140962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 C 0.149 3.851 4 N -0.706 5.706 5 C 0.511 3.489 6 O -0.586 6.586 7 C -0.120 4.120 8 C -0.026 4.026 9 C 0.035 3.965 10 N -0.503 5.503 11 C 0.018 3.982 12 C -0.253 4.253 13 S 0.148 5.852 14 C 0.166 3.834 15 N -0.607 5.607 16 C -0.258 4.258 17 H 0.074 0.926 18 C -0.051 4.051 19 N -0.937 5.937 20 Si 0.967 3.033 21 H -0.283 1.283 22 H -0.299 1.299 23 H -0.267 1.267 24 C 0.101 3.899 25 C 0.053 3.947 26 O -0.385 6.385 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.415 0.585 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.194 0.806 38 H 0.206 0.794 39 H 0.067 0.933 40 H -0.009 1.009 41 H 0.250 0.750 42 H 0.011 0.989 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.752 15.333 20.430 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 C 0.024 3.976 4 N -0.358 5.358 5 C 0.299 3.701 6 O -0.466 6.466 7 C -0.161 4.161 8 C -0.068 4.068 9 C -0.242 4.242 10 N -0.219 5.219 11 C -0.132 4.132 12 C -0.391 4.391 13 S 0.401 5.599 14 C 0.039 3.961 15 N -0.331 5.331 16 C -0.388 4.388 17 H 0.091 0.909 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.795 3.205 21 H -0.210 1.210 22 H -0.226 1.226 23 H -0.192 1.192 24 C -0.024 4.024 25 C -0.024 4.024 26 O -0.304 6.304 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.253 0.747 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.211 0.789 38 H 0.223 0.777 39 H 0.085 0.915 40 H 0.009 0.991 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.404 15.802 19.201 26.249 hybrid contribution 0.187 -0.741 -0.344 0.838 sum -8.217 15.062 18.858 25.495 Atomic orbital electron populations 1.22109 0.93828 1.02828 1.02231 1.22189 0.94725 0.90598 0.87230 1.21011 0.98618 0.89484 0.88485 1.45814 1.53335 1.11722 1.24943 1.21093 0.79524 0.81635 0.87826 1.90708 1.39939 1.67025 1.48977 1.21578 1.04186 0.94549 0.95789 1.19895 1.02177 0.93347 0.91335 1.27042 0.96678 1.02838 0.97681 1.66298 1.34992 1.20269 1.00318 1.22195 0.93621 0.97404 0.99992 1.27511 1.02916 1.09725 0.98998 1.84027 1.21340 1.46107 1.08438 1.21089 0.95339 0.84386 0.95262 1.44270 1.68672 1.05554 1.14612 1.19509 1.21224 1.11947 0.86076 0.90851 1.25799 0.98824 1.00815 0.99188 1.70184 1.31091 1.38494 1.18494 0.85270 0.78515 0.78485 0.78216 1.20962 1.22603 1.19167 1.21824 0.96968 0.96392 0.87246 1.23099 0.99137 0.81797 0.98390 1.87824 1.73331 1.26410 1.42870 0.90137 0.92626 0.92109 0.93028 0.90895 0.74724 0.85843 0.87043 0.89775 0.88590 0.78937 0.77691 0.91450 0.99111 0.94079 0.97120 0.91011 0.92006 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 7.92 71.98 0.57 -4.20 16 2 C 0.09 3.36 0.76 -10.70 -0.01 3.36 16 3 C 0.15 5.03 4.82 86.38 0.42 5.45 16 4 N -0.71 -18.16 5.15 -463.06 -2.39 -20.54 16 5 C 0.51 13.29 7.83 87.66 0.69 13.98 16 6 O -0.59 -20.42 15.98 -3.02 -0.05 -20.47 16 7 C -0.12 -2.06 5.68 29.85 0.17 -1.89 16 8 C -0.03 -0.50 5.09 29.85 0.15 -0.35 16 9 C 0.03 0.63 6.64 88.52 0.59 1.21 16 10 N -0.50 -10.27 10.54 -191.45 -2.02 -12.29 16 11 C 0.02 0.26 11.35 83.65 0.95 1.21 16 12 C -0.25 -2.77 11.36 66.77 0.76 -2.01 16 13 S 0.15 1.91 23.18 -56.49 -1.31 0.60 16 14 C 0.17 7.92 4.12 86.34 0.36 8.28 16 15 N -0.61 -29.55 2.57 -697.33 -1.79 -31.34 16 16 C -0.26 -13.65 9.65 84.04 0.81 -12.84 16 17 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 18 C -0.05 -2.78 4.95 84.86 0.42 -2.36 16 19 N -0.94 -55.05 11.14 21.65 0.24 -54.81 16 20 Si 0.97 43.91 29.59 68.60 2.03 45.94 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.10 4.02 6.73 86.35 0.58 4.60 16 25 C 0.05 1.65 6.60 72.08 0.48 2.13 16 26 O -0.38 -13.16 9.97 -148.98 -1.49 -14.64 16 27 H 0.08 1.90 6.87 -2.39 -0.02 1.88 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.06 2.08 6.12 -2.39 -0.01 2.07 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.42 8.50 7.20 -92.71 -0.67 7.83 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 36 H 0.10 1.77 8.10 -2.39 -0.02 1.76 16 37 H 0.19 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.21 0.90 8.06 -2.91 -0.02 0.87 16 39 H 0.07 3.60 6.14 -2.39 -0.01 3.58 16 40 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 41 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.07 2.66 7.96 -2.38 -0.02 2.64 16 44 H 0.06 1.80 6.25 -2.39 -0.01 1.78 16 45 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -71.70 377.13 0.49 -71.21 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.34 Total: 19.78 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 6.93 Total: 16.56 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -5.96 Total: -118.98 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.53 Total: -35.12 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.31 Total: 0.60 kcal Total: -71.70 0.49 -71.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108406064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.997 kcal (2) G-P(sol) polarization free energy of solvation -71.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds