Wall clock time and date at job start Tue Mar 31 2020 22:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.55226 * 2 1 4 4 N 1.46495 * 109.47092 * 304.87212 * 3 2 1 5 5 C 1.34784 * 120.00100 * 179.97438 * 4 3 2 6 6 O 1.21277 * 119.99563 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.99845 * 179.97438 * 5 4 3 8 8 C 1.53007 * 109.46837 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47099 * 180.02562 * 8 7 5 10 10 N 1.29023 * 124.91801 * 89.99865 * 9 8 7 11 11 C 1.31783 * 117.12462 * 179.97438 * 10 9 8 12 12 C 1.33645 * 114.50175 * 359.97438 * 11 10 9 13 13 S 1.70979 * 124.91562 * 269.69549 * 9 8 7 14 14 C 1.53288 * 109.51183 * 120.12630 * 2 1 3 15 15 N 1.47148 * 108.38852 * 67.62192 * 14 2 1 16 16 C 1.36938 * 120.98705 * 230.55902 * 15 14 2 17 17 H 1.08001 * 119.99863 * 153.29877 * 16 15 14 18 18 C 1.38813 * 119.99808 * 333.30057 * 16 15 14 19 19 N 1.31618 * 119.99580 * 343.54885 * 18 16 15 20 20 Si 1.86796 * 119.99837 * 163.55016 * 18 16 15 21 21 H 1.48500 * 109.47585 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46899 * 120.00079 * 20 18 16 23 23 H 1.48505 * 109.47044 * 239.99720 * 20 18 16 24 24 C 1.47159 * 118.03554 * 50.53264 * 15 14 2 25 25 C 1.53301 * 108.38149 * 309.47195 * 24 15 14 26 26 O 1.42952 * 109.22472 * 52.29798 * 25 24 15 27 27 H 1.08995 * 109.47084 * 180.12716 * 1 2 3 28 28 H 1.09004 * 109.47359 * 300.12730 * 1 2 3 29 29 H 1.08997 * 109.47160 * 60.12628 * 1 2 3 30 30 H 1.09001 * 109.46690 * 64.87352 * 3 2 1 31 31 H 1.08995 * 109.46651 * 184.87148 * 3 2 1 32 32 H 0.97000 * 120.00033 * 0.02562 * 4 3 2 33 33 H 1.08996 * 109.47203 * 299.99862 * 7 5 4 34 34 H 1.09004 * 109.47519 * 60.00442 * 7 5 4 35 35 H 1.09001 * 109.46690 * 300.00180 * 8 7 5 36 36 H 1.08995 * 109.46651 * 59.99975 * 8 7 5 37 37 H 1.07998 * 122.75066 * 179.97438 * 11 10 9 38 38 H 1.07994 * 126.03773 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.68566 * 187.34742 * 14 2 1 40 40 H 1.09003 * 109.68257 * 307.86000 * 14 2 1 41 41 H 0.97005 * 119.99361 * 179.97438 * 19 18 16 42 42 H 1.08993 * 109.68793 * 189.74305 * 24 15 14 43 43 H 1.09006 * 109.67927 * 69.18579 * 24 15 14 44 44 H 1.08999 * 109.50973 * 172.22266 * 25 24 15 45 45 H 1.09001 * 109.50729 * 292.32081 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4613 2.1663 -1.1332 5 6 1.7717 3.4623 -1.3349 6 8 2.5321 4.0285 -0.5786 7 6 1.1748 4.2073 -2.5009 8 6 1.6867 5.6491 -2.5009 9 6 1.0893 6.3943 -3.6665 10 7 -0.0214 7.0499 -3.6328 11 6 -0.4006 7.6470 -4.7448 12 6 0.4372 7.4865 -5.7736 13 16 1.7890 6.4996 -5.2230 14 6 2.0420 -0.7252 1.2497 15 7 1.6960 -2.1507 1.1336 16 6 1.0608 -2.8073 2.1537 17 1 0.4415 -3.6660 1.9403 18 6 1.2128 -2.3691 3.4621 19 7 2.1956 -1.5503 3.7718 20 14 0.0226 -2.9417 4.7830 21 1 -0.9854 -3.8509 4.1808 22 1 0.7702 -3.6636 5.8437 23 1 -0.6637 -1.7650 5.3746 24 6 2.0521 -2.8498 -0.1114 25 6 1.5396 -2.0209 -1.2948 26 8 2.0075 -0.6764 -1.1655 27 1 -0.3633 -1.0276 0.0023 28 1 -0.3634 0.5158 0.8889 29 1 -0.3633 0.5119 -0.8911 30 1 1.7524 1.9302 0.9304 31 1 3.1285 1.4414 -0.0873 32 1 0.8529 1.7135 -1.7378 33 1 1.4652 3.7190 -3.4311 34 1 0.0882 4.2072 -2.4144 35 1 1.3967 6.1376 -1.5706 36 1 2.7732 5.6488 -2.5877 37 1 -1.3136 8.2191 -4.8187 38 1 0.3101 7.8931 -6.7659 39 1 3.1241 -0.6147 1.3209 40 1 1.5709 -0.3036 2.1377 41 1 2.3016 -1.2438 4.6860 42 1 1.5873 -3.8355 -0.1248 43 1 3.1353 -2.9531 -0.1773 44 1 1.9114 -2.4478 -2.2263 45 1 0.4497 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108406065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:26 Heat of formation + Delta-G solvation = -13.962085 kcal Electronic energy + Delta-G solvation = -27059.099893 eV Core-core repulsion = 23204.337537 eV Total energy + Delta-G solvation = -3854.762356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.12105 -39.70946 -38.79389 -35.04727 -34.37012 -34.06251 -31.77861 -31.27275 -29.98943 -27.97801 -27.12124 -26.19787 -25.16722 -23.35037 -23.21450 -21.23985 -20.32495 -20.13954 -18.71516 -18.33684 -17.27934 -16.90989 -15.99637 -15.88402 -15.69670 -15.42887 -15.05927 -14.75390 -14.37838 -14.23286 -14.10656 -13.89598 -13.51957 -13.32081 -13.19302 -12.91535 -12.64627 -12.42217 -12.33580 -11.90542 -11.83580 -11.60760 -11.37374 -11.21194 -11.03956 -10.85104 -10.68154 -10.33001 -10.25077 -10.03724 -9.96400 -9.83872 -9.72707 -9.55341 -9.21423 -9.05405 -8.84532 -8.56300 -6.75698 -5.86633 -3.30558 0.35866 1.02616 1.42188 2.49705 2.73026 3.26393 3.32567 3.40338 3.41919 3.87726 4.23135 4.41831 4.55859 4.74397 4.80704 4.87603 5.05848 5.13460 5.14765 5.30203 5.32654 5.46107 5.50361 5.56764 5.65183 5.76215 5.86451 5.89607 5.91783 6.00741 6.08199 6.11902 6.29254 6.43755 6.55976 6.66753 6.73782 6.80352 7.05039 7.41570 7.44652 7.63972 7.69295 7.86210 8.30857 8.33080 9.08817 9.71721 10.29001 11.21336 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.002107 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.475408 B =13287.342375 C =13752.380886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 C 0.139 3.861 4 N -0.717 5.717 5 C 0.511 3.489 6 O -0.544 6.544 7 C -0.134 4.134 8 C -0.029 4.029 9 C 0.056 3.944 10 N -0.474 5.474 11 C 0.039 3.961 12 C -0.265 4.265 13 S 0.122 5.878 14 C 0.160 3.840 15 N -0.591 5.591 16 C -0.254 4.254 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.288 1.288 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.384 6.384 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.402 0.598 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.176 0.824 38 H 0.177 0.823 39 H 0.030 0.970 40 H 0.096 0.904 41 H 0.255 0.745 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.080 0.920 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 14.014 -19.431 24.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.015 3.985 4 N -0.369 5.369 5 C 0.297 3.703 6 O -0.422 6.422 7 C -0.176 4.176 8 C -0.071 4.071 9 C -0.221 4.221 10 N -0.189 5.189 11 C -0.112 4.112 12 C -0.405 4.405 13 S 0.376 5.624 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.383 4.383 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.214 1.214 24 C -0.018 4.018 25 C -0.032 4.032 26 O -0.304 6.304 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.237 0.763 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.193 0.807 38 H 0.194 0.806 39 H 0.048 0.952 40 H 0.114 0.886 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.375 14.173 -18.795 23.659 hybrid contribution -1.887 -0.155 0.425 1.940 sum -4.262 14.018 -18.370 23.497 Atomic orbital electron populations 1.22203 0.95794 1.03256 1.00676 1.22551 0.93547 0.90706 0.89515 1.21352 0.98820 0.89429 0.88863 1.46033 1.48930 1.10972 1.30932 1.20404 0.81568 0.82122 0.86208 1.90719 1.36226 1.67815 1.47470 1.21623 1.02854 0.94757 0.98353 1.20012 1.00423 0.92589 0.94044 1.27195 0.94651 1.01042 0.99256 1.66309 1.13887 1.10125 1.28538 1.21851 1.01529 1.00824 0.86955 1.27109 0.99297 1.08595 1.05452 1.84144 1.24193 1.46876 1.07224 1.21288 0.97850 0.83946 0.93619 1.44001 1.68609 1.04962 1.13859 1.19193 1.21307 1.12524 0.85307 0.91396 1.25058 0.97269 1.00077 0.97151 1.70021 1.29162 1.36864 1.18458 0.86222 0.80655 0.78060 0.81829 1.20259 1.21636 1.21449 1.21602 0.97555 0.95221 0.87373 1.23031 0.98285 0.83150 0.98718 1.87817 1.72909 1.25805 1.43836 0.90787 0.91848 0.93976 0.89969 0.90790 0.76288 0.88681 0.88257 0.87714 0.88588 0.80747 0.80610 0.95239 0.88570 0.93459 0.92056 0.95653 0.90213 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 7.86 37.16 0.29 -2.39 16 2 C 0.08 1.41 0.78 -90.47 -0.07 1.34 16 3 C 0.14 2.31 4.85 -4.04 -0.02 2.30 16 4 N -0.72 -9.70 5.19 -60.30 -0.31 -10.01 16 5 C 0.51 6.86 7.83 -10.98 -0.09 6.77 16 6 O -0.54 -9.32 15.98 5.56 0.09 -9.24 16 7 C -0.13 -1.28 5.68 -27.88 -0.16 -1.44 16 8 C -0.03 -0.29 5.09 -27.88 -0.14 -0.43 16 9 C 0.06 0.55 6.64 -13.46 -0.09 0.46 16 10 N -0.47 -5.11 10.54 -11.86 -0.13 -5.23 16 11 C 0.04 0.33 11.35 -19.18 -0.22 0.11 16 12 C -0.27 -1.84 11.37 29.12 0.33 -1.51 16 13 S 0.12 0.94 23.18 -107.50 -2.49 -1.56 16 14 C 0.16 3.66 4.11 -3.54 -0.01 3.65 16 15 N -0.59 -14.18 2.56 -171.82 -0.44 -14.62 16 16 C -0.25 -6.68 9.65 -15.06 -0.15 -6.83 16 17 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 19 N -0.90 -25.47 11.14 55.49 0.62 -24.85 16 20 Si 0.90 21.13 29.58 -169.99 -5.03 16.10 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.11 2.20 6.74 -3.53 -0.02 2.17 16 25 C 0.05 0.78 6.60 37.31 0.25 1.02 16 26 O -0.38 -6.88 10.17 -35.23 -0.36 -7.24 16 27 H 0.07 1.35 6.11 -51.93 -0.32 1.03 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.04 0.57 6.59 -51.93 -0.34 0.23 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 32 H 0.40 4.69 7.00 -40.82 -0.29 4.40 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 36 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.18 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 2.44 6.16 -51.93 -0.32 2.12 16 41 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.06 1.17 7.96 -51.93 -0.41 0.76 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.78 6.26 -51.93 -0.32 0.45 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -31.77 376.89 -9.18 -40.95 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.62 Total: 4.79 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -0.18 Total: 5.22 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.26 Total: -54.71 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.27 Total: -16.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.77 -9.18 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108406065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.987 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds